Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46317 * 119.91620 * 90.00162 * 10 9 7 12 12 C 1.52607 * 110.54467 * 142.47457 * 11 10 9 13 13 N 1.46315 * 110.53924 * 51.55813 * 12 11 10 14 14 C 1.34814 * 120.16736 * 322.47632 * 13 12 11 15 15 O 1.21340 * 120.46633 * 186.01952 * 14 13 12 16 16 C 1.34804 * 119.91599 * 269.72720 * 10 9 7 17 17 O 1.21344 * 120.46651 * 5.97467 * 16 10 9 18 18 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 20 20 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 21 21 H 1.08997 * 109.26437 * 262.75538 * 11 10 9 22 22 H 1.09004 * 109.26106 * 22.24012 * 11 10 9 23 23 H 1.08997 * 109.26388 * 171.83036 * 12 11 10 24 24 H 1.09001 * 109.25909 * 291.32277 * 12 11 10 25 25 H 0.96996 * 119.92012 * 142.49797 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.6776 -4.1672 1.2687 12 6 2.8281 -5.6824 1.1677 13 7 3.6304 -6.0418 -0.0019 14 6 3.5051 -5.3453 -1.1494 15 8 4.0848 -5.7038 -2.1532 16 6 2.6361 -4.1271 -1.1679 17 8 2.3285 -3.6076 -2.2204 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8897 20 1 0.6243 -2.5567 0.8903 21 1 3.6430 -3.7256 1.5158 22 1 1.9616 -3.9292 2.0554 23 1 3.3167 -6.0561 2.0675 24 1 1.8411 -6.1367 1.0794 25 1 4.2538 -6.7832 0.0483 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261025894.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = -91.357036 kcal Electronic energy + Delta-G solvation = -12608.144129 eV Core-core repulsion = 10199.741095 eV Total energy + Delta-G solvation = -2408.403034 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.90673 -39.31845 -38.07880 -35.71126 -34.35884 -30.62651 -29.60376 -26.34258 -24.63206 -23.73673 -19.66990 -18.98475 -18.79648 -18.41260 -17.22644 -16.87425 -16.23048 -15.77965 -15.22746 -15.13265 -14.41478 -14.13464 -13.60944 -13.39811 -13.15548 -12.70393 -12.47587 -12.42110 -12.17910 -11.76201 -10.67154 -10.64097 -10.33738 -9.63933 -8.25084 -6.39035 0.36624 1.37852 1.42324 1.48942 1.68909 2.05308 2.32042 2.39722 3.06048 3.34892 3.81616 4.25651 4.43333 4.72742 4.86988 5.00579 5.14347 5.33979 5.59724 5.74830 5.77924 6.00439 6.39450 6.64939 6.72871 7.09437 7.31847 8.82192 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.051704 B = 0.010182 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.416652 B = 2749.360127 C = 2927.646282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.964 3.036 4 H -0.284 1.284 5 H -0.277 1.277 6 H -0.257 1.257 7 C -0.550 4.550 8 H 0.051 0.949 9 C 0.255 3.745 10 N -0.580 5.580 11 C 0.080 3.920 12 C 0.097 3.903 13 N -0.688 5.688 14 C 0.522 3.478 15 O -0.546 6.546 16 C 0.483 3.517 17 O -0.556 6.556 18 H 0.269 0.731 19 H 0.000 1.000 20 H 0.049 0.951 21 H 0.079 0.921 22 H 0.124 0.876 23 H 0.162 0.838 24 H 0.089 0.911 25 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 -10.915 9.858 15.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.181 1.181 7 C -0.588 4.588 8 H 0.069 0.931 9 C 0.134 3.866 10 N -0.314 5.314 11 C -0.041 4.041 12 C -0.026 4.026 13 N -0.346 5.346 14 C 0.302 3.698 15 O -0.422 6.422 16 C 0.265 3.735 17 O -0.433 6.433 18 H 0.078 0.922 19 H 0.018 0.982 20 H 0.067 0.933 21 H 0.097 0.903 22 H 0.142 0.858 23 H 0.180 0.820 24 H 0.107 0.893 25 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 5.206 -10.559 8.812 14.706 hybrid contribution 0.330 0.888 -0.408 1.032 sum 5.536 -9.671 8.404 13.957 Atomic orbital electron populations 1.70006 1.07361 1.28404 1.50548 1.25775 0.95791 1.02831 0.94263 0.85521 0.78387 0.78316 0.78913 1.20952 1.20181 1.18150 1.21637 0.93262 0.91989 1.51915 0.93055 1.19042 0.87450 0.83076 0.97026 1.48452 1.43466 1.33628 1.05898 1.22258 1.02557 0.93949 0.85375 1.22238 0.97816 0.93291 0.89236 1.45921 1.43493 1.34539 1.10628 1.20240 0.81380 0.83883 0.84282 1.90732 1.47720 1.68834 1.34876 1.20770 0.82253 0.85754 0.84728 1.90714 1.57745 1.61806 1.33037 0.92215 0.98161 0.93281 0.90316 0.85792 0.82026 0.89311 0.73549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.12 13.29 21.45 0.28 -53.84 15 2 C 0.01 0.74 5.46 84.65 0.46 1.20 15 3 Si 0.96 44.13 29.54 68.60 2.03 46.16 15 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 5 H -0.28 -12.20 7.11 99.48 0.71 -11.49 15 6 H -0.26 -10.92 7.11 99.48 0.71 -10.21 15 7 C -0.55 -30.86 9.39 25.60 0.24 -30.62 15 8 H 0.05 2.88 7.81 -2.91 -0.02 2.86 15 9 C 0.25 12.99 5.16 85.63 0.44 13.43 15 10 N -0.58 -23.50 2.79 -828.65 -2.31 -25.81 15 11 C 0.08 1.95 6.60 86.28 0.57 2.52 15 12 C 0.10 1.39 7.18 86.28 0.62 2.01 15 13 N -0.69 -14.58 5.64 -465.20 -2.62 -17.20 15 14 C 0.52 18.96 7.91 87.32 0.69 19.65 15 15 O -0.55 -23.76 17.84 11.59 0.21 -23.55 15 16 C 0.48 21.94 7.60 87.32 0.66 22.61 15 17 O -0.56 -31.86 16.67 11.57 0.19 -31.66 15 18 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 19 H 0.00 0.02 7.51 -2.38 -0.02 0.00 15 20 H 0.05 2.39 7.83 -2.39 -0.02 2.37 15 21 H 0.08 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.12 2.53 7.79 -2.39 -0.02 2.51 15 23 H 0.16 0.55 8.14 -2.39 -0.02 0.53 15 24 H 0.09 1.17 8.14 -2.39 -0.02 1.15 15 25 H 0.42 6.23 8.93 -92.71 -0.83 5.40 15 Total: -1.00 -80.56 228.99 1.84 -78.72 By element: Atomic # 1 Polarization: -4.00 SS G_CDS: 0.39 Total: -3.62 kcal Atomic # 6 Polarization: 27.11 SS G_CDS: 3.69 Total: 30.80 kcal Atomic # 7 Polarization: -92.19 SS G_CDS: -4.65 Total: -96.85 kcal Atomic # 8 Polarization: -55.61 SS G_CDS: 0.40 Total: -55.21 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -80.56 1.84 -78.72 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025894.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.636 kcal (2) G-P(sol) polarization free energy of solvation -80.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds