Wall clock time and date at job start Mon Mar 30 2020 01:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50704 * 109.47210 * 2 1 4 4 N 1.29194 * 125.34678 * 0.37057 * 3 2 1 5 5 N 1.40273 * 107.86702 * 180.15368 * 4 3 2 6 6 C 1.46506 * 126.64135 * 179.81579 * 5 4 3 7 7 C 1.50699 * 109.46892 * 269.68877 * 6 5 4 8 8 H 1.08002 * 120.00511 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99783 * 179.97438 * 7 6 5 10 10 N 1.31514 * 119.99573 * 180.27665 * 9 7 6 11 11 Si 1.86800 * 119.99781 * 359.97438 * 9 7 6 12 12 H 1.48501 * 109.46758 * 89.99934 * 11 9 7 13 13 H 1.48499 * 109.47026 * 209.99782 * 11 9 7 14 14 H 1.48496 * 109.47474 * 329.99818 * 11 9 7 15 15 C 1.35035 * 106.72617 * 359.55483 * 5 4 3 16 16 O 1.21708 * 126.37790 * 180.29615 * 15 5 4 17 17 O 1.34317 * 107.25420 * 0.26210 * 15 5 4 18 18 H 1.08999 * 109.46939 * 179.97438 * 1 2 3 19 19 H 1.09008 * 109.46573 * 299.99116 * 1 2 3 20 20 H 1.08998 * 109.47756 * 59.99048 * 1 2 3 21 21 H 1.09008 * 109.46573 * 240.00884 * 2 1 3 22 22 H 1.08998 * 109.47756 * 120.00952 * 2 1 3 23 23 H 1.08992 * 109.47369 * 149.68959 * 6 5 4 24 24 H 1.09005 * 109.46788 * 29.68252 * 6 5 4 25 25 H 0.97004 * 119.99485 * 179.72881 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 1.2880 2.4768 0.0068 5 7 2.1312 3.5978 0.0005 6 6 1.7174 5.0032 0.0010 7 6 1.5748 5.4853 -1.4196 8 1 1.7730 4.8124 -2.2408 9 6 1.1912 6.7856 -1.6711 10 7 1.0615 7.2048 -2.9109 11 14 0.8477 7.9493 -0.2508 12 1 2.0996 8.6538 0.1257 13 1 -0.1754 8.9439 -0.6622 14 1 0.3459 7.1754 0.9130 15 6 3.3983 3.1310 -0.0002 16 8 4.4144 3.8009 0.0000 17 8 3.3287 1.7896 -0.0005 18 1 -0.3633 -1.0277 -0.0005 19 1 -0.3633 0.5138 0.8902 20 1 -0.3634 0.5139 -0.8898 21 1 1.8933 -0.5138 -0.8902 22 1 1.8934 -0.5139 0.8898 23 1 2.4687 5.6030 0.5145 24 1 0.7612 5.1001 0.5153 25 1 0.7879 8.1184 -3.0878 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261033489.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:13 Heat of formation + Delta-G solvation = -38.587487 kcal Electronic energy + Delta-G solvation = -12442.378879 eV Core-core repulsion = 10036.264104 eV Total energy + Delta-G solvation = -2406.114775 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.41384 -39.17272 -37.43625 -35.51665 -34.83105 -32.24938 -29.62273 -26.39251 -24.98733 -23.17563 -22.42018 -19.48907 -18.79025 -18.53391 -17.56029 -16.89702 -16.33435 -15.66815 -15.52647 -14.62117 -14.21403 -14.03879 -13.88618 -13.30691 -13.25262 -12.81613 -12.61233 -12.35653 -12.15180 -11.97414 -11.85758 -11.78715 -10.92766 -9.90338 -8.44307 -6.56133 0.62534 0.67996 1.10733 1.34373 1.37419 1.46654 1.73951 2.25195 2.87115 3.24753 3.77226 4.25721 4.31816 4.35194 4.47891 4.71092 4.90120 5.01456 5.10383 5.12498 5.16638 5.50162 6.00934 6.33830 6.43363 6.59505 7.07189 8.72668 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.044218 B = 0.010315 C = 0.009359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.073801 B = 2713.917050 C = 2991.154701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.025 4.025 3 C 0.230 3.770 4 N -0.281 5.281 5 N -0.438 5.438 6 C 0.262 3.738 7 C -0.562 4.562 8 H 0.024 0.976 9 C 0.020 3.980 10 N -0.936 5.936 11 Si 0.953 3.047 12 H -0.263 1.263 13 H -0.270 1.270 14 H -0.234 1.234 15 C 0.589 3.411 16 O -0.532 6.532 17 O -0.276 6.276 18 H 0.107 0.893 19 H 0.057 0.943 20 H 0.046 0.954 21 H 0.129 0.871 22 H 0.139 0.861 23 H 0.056 0.944 24 H 0.074 0.926 25 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -13.754 9.194 16.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.063 4.063 3 C 0.005 3.995 4 N -0.110 5.110 5 N -0.267 5.267 6 C 0.144 3.856 7 C -0.600 4.600 8 H 0.043 0.957 9 C -0.179 4.179 10 N -0.574 5.574 11 Si 0.774 3.226 12 H -0.188 1.188 13 H -0.195 1.195 14 H -0.157 1.157 15 C 0.341 3.659 16 O -0.418 6.418 17 O -0.173 6.173 18 H 0.126 0.874 19 H 0.076 0.924 20 H 0.065 0.935 21 H 0.147 0.853 22 H 0.157 0.843 23 H 0.074 0.926 24 H 0.092 0.908 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.155 -12.923 9.083 16.107 hybrid contribution 0.811 0.827 -0.264 1.187 sum -2.344 -12.096 8.819 15.152 Atomic orbital electron populations 1.21701 0.91557 1.04335 1.02655 1.20729 0.97677 0.79874 1.08058 1.28011 0.75952 1.00158 0.95427 1.77068 1.19638 0.91780 1.22493 1.50265 1.02813 1.07392 1.66262 1.19685 0.97857 0.70877 0.97187 1.21331 1.49384 0.98024 0.91305 0.95736 1.25868 0.93365 0.99327 0.99385 1.70026 1.47088 1.18697 1.21624 0.85647 0.79294 0.78626 0.79062 1.18785 1.19460 1.15709 1.19450 0.85922 0.80249 0.80254 1.91097 1.33796 1.58324 1.58557 1.85055 1.30436 1.23195 1.78596 0.87421 0.92372 0.93474 0.85318 0.84316 0.92610 0.90807 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.36 71.98 0.67 -1.52 15 2 C -0.03 -0.39 6.56 29.85 0.20 -0.19 15 3 C 0.23 7.02 8.09 88.50 0.72 7.74 15 4 N -0.28 -10.90 11.79 -166.07 -1.96 -12.86 15 5 N -0.44 -20.57 3.62 -594.32 -2.15 -22.73 15 6 C 0.26 13.07 5.24 85.63 0.45 13.51 15 7 C -0.56 -33.68 9.94 25.60 0.25 -33.43 15 8 H 0.02 1.67 8.06 -2.91 -0.02 1.65 15 9 C 0.02 1.19 5.47 84.66 0.46 1.65 15 10 N -0.94 -58.41 13.96 21.45 0.30 -58.11 15 11 Si 0.95 42.21 27.47 68.60 1.88 44.09 15 12 H -0.26 -11.35 7.11 99.48 0.71 -10.64 15 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 14 H -0.23 -9.23 6.54 99.48 0.65 -8.58 15 15 C 0.59 27.69 9.25 129.75 1.20 28.89 15 16 O -0.53 -28.26 17.93 18.75 0.34 -27.92 15 17 O -0.28 -10.30 10.71 15.80 0.17 -10.13 15 18 H 0.11 0.87 8.14 -2.39 -0.02 0.85 15 19 H 0.06 1.00 8.14 -2.38 -0.02 0.98 15 20 H 0.05 0.93 8.14 -2.39 -0.02 0.92 15 21 H 0.13 1.43 8.14 -2.38 -0.02 1.41 15 22 H 0.14 1.23 8.14 -2.39 -0.02 1.21 15 23 H 0.06 2.72 7.55 -2.39 -0.02 2.70 15 24 H 0.07 3.37 7.20 -2.38 -0.02 3.35 15 25 H 0.28 15.72 8.31 -92.71 -0.77 14.95 15 Total: -1.00 -76.60 231.98 3.67 -72.94 By element: Atomic # 1 Polarization: -3.09 SS G_CDS: 1.14 Total: -1.95 kcal Atomic # 6 Polarization: 12.71 SS G_CDS: 3.95 Total: 16.66 kcal Atomic # 7 Polarization: -89.88 SS G_CDS: -3.81 Total: -93.69 kcal Atomic # 8 Polarization: -38.56 SS G_CDS: 0.51 Total: -38.05 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.88 Total: 44.09 kcal Total: -76.60 3.67 -72.94 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261033489.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.349 kcal (2) G-P(sol) polarization free energy of solvation -76.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds