Wall clock time and date at job start Mon Mar 30 2020 02:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34520 * 125.78639 * 2 1 4 4 C 1.41381 * 106.83580 * 180.22245 * 3 2 1 5 5 C 1.34513 * 106.84363 * 359.57150 * 4 3 2 6 6 C 1.50698 * 125.78877 * 180.18958 * 5 4 3 7 7 C 1.52996 * 109.47307 * 75.30541 * 6 5 4 8 8 F 1.39901 * 109.47290 * 315.30459 * 6 5 4 9 9 C 1.50698 * 109.46922 * 195.30409 * 6 5 4 10 10 H 1.07999 * 120.00378 * 0.02562 * 9 6 5 11 11 C 1.37878 * 120.00001 * 179.97438 * 9 6 5 12 12 N 1.31522 * 119.99801 * 0.02562 * 11 9 6 13 13 Si 1.86794 * 120.00112 * 180.02562 * 11 9 6 14 14 H 1.48504 * 109.47110 * 60.00246 * 13 11 9 15 15 H 1.48503 * 109.47256 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47297 * 300.00292 * 13 11 9 17 17 O 1.34302 * 125.79150 * 179.97438 * 2 1 3 18 18 H 1.08999 * 109.46956 * 90.00702 * 1 2 3 19 19 H 1.09002 * 109.47373 * 210.00540 * 1 2 3 20 20 H 1.09001 * 109.47377 * 330.00690 * 1 2 3 21 21 H 1.08002 * 126.57789 * 359.95308 * 3 2 1 22 22 H 1.08009 * 126.57222 * 179.73218 * 4 3 2 23 23 H 1.09003 * 109.47106 * 59.99693 * 7 6 5 24 24 H 1.09003 * 109.47575 * 180.02562 * 7 6 5 25 25 H 1.09007 * 109.47356 * 300.00235 * 7 6 5 26 26 H 0.97004 * 119.99698 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2936 1.0912 0.0000 4 6 3.6308 0.6321 -0.0053 5 6 3.5814 -0.7121 0.0015 6 6 4.7706 -1.6377 0.0033 7 6 5.4010 -1.6554 1.3973 8 9 5.7124 -1.1888 -0.9287 9 6 4.3244 -3.0295 -0.3638 10 1 3.2839 -3.2243 -0.5776 11 6 5.2448 -4.0541 -0.4279 12 7 6.5121 -3.8169 -0.1681 13 14 4.6919 -5.7791 -0.8837 14 1 4.0799 -5.7615 -2.2367 15 1 5.8639 -6.6911 -0.8830 16 1 3.6923 -6.2561 0.1055 17 8 2.2925 -1.0894 0.0005 18 1 -0.3633 -0.0001 -1.0277 19 1 -0.3634 -0.8899 0.5139 20 1 -0.3634 0.8900 0.5137 21 1 1.9664 2.1205 -0.0007 22 1 4.5212 1.2435 -0.0107 23 1 4.6672 -2.0051 2.1235 24 1 6.2615 -2.3245 1.3985 25 1 5.7237 -0.6486 1.6629 26 1 7.1595 -4.5378 -0.2128 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261040678.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:00 Heat of formation + Delta-G solvation = -62.421228 kcal Electronic energy + Delta-G solvation = -12682.460624 eV Core-core repulsion = 10255.392379 eV Total energy + Delta-G solvation = -2427.068245 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.080 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.97495 -43.37250 -35.75942 -34.01748 -33.45456 -31.39830 -27.59926 -27.03720 -23.36473 -22.32202 -20.94095 -18.73421 -18.05268 -17.11164 -16.54090 -15.80860 -15.49047 -15.36997 -14.23140 -13.93897 -13.81848 -13.65774 -13.63789 -13.32936 -12.86515 -12.73272 -12.65009 -12.62219 -12.28577 -11.62468 -11.03983 -10.74858 -10.70081 -9.14011 -8.25922 -6.53178 0.85536 1.39166 1.41969 1.50482 1.72678 2.10883 2.34552 3.01719 3.80438 4.11848 4.20463 4.38852 4.61750 4.66159 4.75850 4.79260 4.86660 4.93621 5.09269 5.26316 5.47679 5.54744 5.66891 5.81128 5.89919 6.40846 6.57175 7.24371 8.76927 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.042746 B = 0.012555 C = 0.010409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 654.874633 B = 2229.684846 C = 2689.297752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.043 4.043 3 C -0.216 4.216 4 C -0.225 4.225 5 C -0.031 4.031 6 C 0.295 3.705 7 C -0.138 4.138 8 F -0.233 7.233 9 C -0.581 4.581 10 H 0.061 0.939 11 C 0.032 3.968 12 N -0.896 5.896 13 Si 0.971 3.029 14 H -0.273 1.273 15 H -0.273 1.273 16 H -0.264 1.264 17 O -0.182 6.182 18 H 0.092 0.908 19 H 0.077 0.923 20 H 0.115 0.885 21 H 0.179 0.821 22 H 0.149 0.851 23 H 0.052 0.948 24 H 0.081 0.919 25 H 0.044 0.956 26 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 5.788 1.745 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.093 4.093 3 C -0.235 4.235 4 C -0.245 4.245 5 C -0.082 4.082 6 C 0.277 3.723 7 C -0.196 4.196 8 F -0.214 7.214 9 C -0.618 4.618 10 H 0.080 0.920 11 C -0.171 4.171 12 N -0.532 5.532 13 Si 0.794 3.206 14 H -0.198 1.198 15 H -0.197 1.197 16 H -0.189 1.189 17 O -0.079 6.079 18 H 0.110 0.890 19 H 0.095 0.905 20 H 0.134 0.866 21 H 0.197 0.803 22 H 0.167 0.833 23 H 0.071 0.929 24 H 0.100 0.900 25 H 0.063 0.937 26 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.834 5.427 1.741 10.513 hybrid contribution 0.376 -0.601 -0.371 0.800 sum -8.458 4.825 1.370 9.834 Atomic orbital electron populations 1.20459 0.81817 1.05246 1.04567 1.23532 0.96118 0.84032 1.05573 1.21823 0.91234 1.00565 1.09852 1.21796 0.99608 0.93411 1.09644 1.23368 0.83916 0.95237 1.05656 1.16887 0.78966 0.89760 0.86667 1.22078 1.02179 1.00760 0.94601 1.92738 1.67803 1.91043 1.69778 1.21543 0.95515 0.92994 1.51749 0.92042 1.25861 0.94651 1.03524 0.93101 1.70017 1.02298 1.34384 1.46455 0.85432 0.78232 0.77908 0.79040 1.19788 1.19726 1.18885 1.84002 1.16460 1.36207 1.71227 0.88955 0.90456 0.86640 0.80326 0.83344 0.92856 0.90049 0.93667 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.43 10.42 71.24 0.74 -0.69 15 2 C -0.04 -1.50 7.32 24.83 0.18 -1.31 15 3 C -0.22 -7.34 10.81 22.19 0.24 -7.10 15 4 C -0.23 -9.43 10.66 22.19 0.24 -9.19 15 5 C -0.03 -1.52 5.92 24.83 0.15 -1.38 15 6 C 0.30 16.24 1.14 -12.29 -0.01 16.23 15 7 C -0.14 -6.98 8.69 71.98 0.63 -6.35 15 8 F -0.23 -13.74 16.22 44.97 0.73 -13.01 15 9 C -0.58 -33.85 8.21 25.60 0.21 -33.64 15 10 H 0.06 3.60 7.07 -2.91 -0.02 3.58 15 11 C 0.03 1.79 5.27 84.65 0.45 2.23 15 12 N -0.90 -51.76 10.99 21.45 0.24 -51.52 15 13 Si 0.97 43.82 29.54 68.60 2.03 45.84 15 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 15 H -0.27 -11.70 7.11 99.48 0.71 -10.99 15 16 H -0.26 -11.46 7.11 99.48 0.71 -10.75 15 17 O -0.18 -8.44 9.67 -2.47 -0.02 -8.46 15 18 H 0.09 1.76 8.14 -2.39 -0.02 1.74 15 19 H 0.08 1.66 8.14 -2.39 -0.02 1.64 15 20 H 0.12 1.77 8.14 -2.39 -0.02 1.75 15 21 H 0.18 4.46 8.06 -2.91 -0.02 4.43 15 22 H 0.15 5.78 8.06 -2.91 -0.02 5.76 15 23 H 0.05 2.55 8.14 -2.39 -0.02 2.53 15 24 H 0.08 4.41 6.07 -2.39 -0.01 4.40 15 25 H 0.04 2.02 8.14 -2.38 -0.02 2.00 15 26 H 0.27 14.64 8.31 -92.71 -0.77 13.87 15 Total: -1.00 -66.84 234.45 6.95 -59.88 By element: Atomic # 1 Polarization: 7.30 SS G_CDS: 1.17 Total: 8.47 kcal Atomic # 6 Polarization: -44.02 SS G_CDS: 2.81 Total: -41.20 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.24 Total: -51.52 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.02 Total: -8.46 kcal Atomic # 9 Polarization: -13.74 SS G_CDS: 0.73 Total: -13.01 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -66.84 6.95 -59.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261040678.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.538 kcal (2) G-P(sol) polarization free energy of solvation -66.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds