Wall clock time and date at job start Mon Mar 30 2020 02:12:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03518 * 2 1 4 4 C 1.35315 * 107.74580 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.04388 * 179.73639 * 4 3 2 6 6 C 1.53004 * 109.47074 * 75.00196 * 5 4 3 7 7 F 1.39905 * 109.47361 * 315.00297 * 5 4 3 8 8 C 1.50702 * 109.47468 * 195.00543 * 5 4 3 9 9 H 1.07994 * 119.99760 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99831 * 180.02562 * 8 5 4 11 11 N 1.31508 * 120.00375 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99555 * 179.97438 * 10 8 5 13 13 H 1.48496 * 109.47369 * 59.99904 * 12 10 8 14 14 H 1.48508 * 109.46790 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47050 * 299.99461 * 12 10 8 16 16 C 1.39870 * 107.92072 * 0.02562 * 4 3 2 17 17 N 1.30839 * 108.20307 * 359.97438 * 16 4 3 18 18 H 1.08992 * 109.47485 * 89.99681 * 1 2 3 19 19 H 1.09007 * 109.46799 * 209.99867 * 1 2 3 20 20 H 1.08995 * 109.47116 * 329.99333 * 1 2 3 21 21 H 1.07999 * 126.13245 * 0.04834 * 3 2 1 22 22 H 1.09004 * 109.46946 * 60.00488 * 6 5 4 23 23 H 1.09004 * 109.47021 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.47205 * 300.00226 * 6 5 4 25 25 H 0.97004 * 120.00147 * 180.02562 * 11 10 8 26 26 H 1.08001 * 125.90246 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7679 1.5452 -0.0064 6 6 4.9671 2.1516 1.3842 7 9 4.6013 2.5711 -0.9430 8 6 5.9756 0.7217 -0.3731 9 1 5.8675 -0.3326 -0.5807 10 6 7.2187 1.3141 -0.4424 11 7 7.3505 2.5978 -0.1891 12 14 8.7158 0.2931 -0.8962 13 1 8.5230 -0.2954 -2.2459 14 1 9.9222 1.1591 -0.9021 15 1 8.8923 -0.7957 0.0980 16 6 3.5346 -0.7321 -0.0015 17 7 2.2891 -1.1328 -0.0010 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8901 0.5139 20 1 -0.3633 0.8899 0.5139 21 1 1.9281 2.1193 0.0007 22 1 5.0970 1.3523 2.1139 23 1 5.8524 2.7875 1.3798 24 1 4.0936 2.7472 1.6493 25 1 8.2250 3.0147 -0.2383 26 1 4.4054 -1.3711 -0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047597.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:22 Heat of formation + Delta-G solvation = 28.623906 kcal Electronic energy + Delta-G solvation = -12630.942435 eV Core-core repulsion = 10240.114954 eV Total energy + Delta-G solvation = -2390.827480 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -45.50825 -40.39179 -33.85513 -32.49182 -30.75253 -28.35574 -26.13767 -25.11978 -21.62504 -20.37177 -19.01492 -16.62604 -16.14324 -14.94645 -14.66874 -13.96312 -13.56222 -13.34333 -13.17419 -12.51465 -12.20137 -11.95430 -11.52063 -11.16803 -10.83324 -10.64653 -10.54444 -10.35401 -10.09027 -9.16703 -8.78763 -8.73398 -8.50816 -7.59866 -6.03708 -4.20488 2.50653 3.08252 3.32306 3.36547 3.39228 3.61815 4.39080 4.92062 5.26364 5.33061 5.47673 5.53850 5.75143 6.20515 6.38916 6.69316 6.80533 6.85344 7.02261 7.35897 7.58124 7.70825 7.86590 8.05655 8.19840 8.41887 8.80643 9.52158 10.99484 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.055830 B = 0.011175 C = 0.009969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.406278 B = 2505.061209 C = 2808.048006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.392 5.392 3 C 0.042 3.958 4 C -0.217 4.217 5 C 0.307 3.693 6 C -0.149 4.149 7 F -0.231 7.231 8 C -0.548 4.548 9 H 0.067 0.933 10 C 0.076 3.924 11 N -0.873 5.873 12 Si 0.898 3.102 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.074 3.926 17 N -0.321 5.321 18 H 0.065 0.935 19 H 0.081 0.919 20 H 0.080 0.920 21 H 0.166 0.834 22 H 0.043 0.957 23 H 0.092 0.908 24 H 0.016 0.984 25 H 0.264 0.736 26 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.762 -2.311 1.706 9.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.176 5.176 3 C -0.102 4.102 4 C -0.228 4.228 5 C 0.287 3.713 6 C -0.207 4.207 7 F -0.212 7.212 8 C -0.585 4.585 9 H 0.086 0.914 10 C -0.128 4.128 11 N -0.508 5.508 12 Si 0.725 3.275 13 H -0.200 1.200 14 H -0.212 1.212 15 H -0.200 1.200 16 C -0.112 4.112 17 N -0.142 5.142 18 H 0.084 0.916 19 H 0.100 0.900 20 H 0.098 0.902 21 H 0.183 0.817 22 H 0.062 0.938 23 H 0.111 0.889 24 H 0.035 0.965 25 H 0.074 0.926 26 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -9.586 -3.116 1.695 10.221 hybrid contribution 1.268 0.329 -0.324 1.349 sum -8.318 -2.787 1.370 8.879 Atomic orbital electron populations 1.21650 0.75526 1.03590 1.02516 1.48326 1.05850 1.04144 1.59307 1.22236 0.91248 0.92778 1.03957 1.21166 0.95036 0.95071 1.11569 1.16606 0.88326 0.81207 0.85138 1.22227 1.01448 1.00408 0.96652 1.92733 1.96523 1.62919 1.68978 1.21365 0.91200 0.95900 1.50066 0.91448 1.25013 0.99079 0.94903 0.93840 1.69918 1.24071 1.09957 1.46902 0.86569 0.81618 0.80035 0.79265 1.20022 1.21182 1.19953 1.23866 0.94210 0.95217 0.97892 1.77216 1.02070 1.08298 1.26648 0.91601 0.90021 0.90173 0.81687 0.93796 0.88925 0.96522 0.92634 0.79782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.28 11.47 59.85 0.69 1.96 15 2 N -0.39 -7.00 4.01 -68.17 -0.27 -7.27 15 3 C 0.04 0.82 11.27 -17.23 -0.19 0.62 15 4 C -0.22 -4.94 4.98 -105.06 -0.52 -5.46 15 5 C 0.31 7.93 1.14 -92.92 -0.11 7.82 15 6 C -0.15 -3.64 8.69 37.16 0.32 -3.32 15 7 F -0.23 -6.50 16.23 2.25 0.04 -6.47 15 8 C -0.55 -14.96 8.07 -34.44 -0.28 -15.24 15 9 H 0.07 1.76 5.89 -52.49 -0.31 1.45 15 10 C 0.08 2.10 5.27 -17.82 -0.09 2.00 15 11 N -0.87 -24.86 10.99 55.43 0.61 -24.25 15 12 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 15 13 H -0.27 -6.41 7.11 56.52 0.40 -6.01 15 14 H -0.29 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 16 C 0.07 1.59 10.97 -17.36 -0.19 1.40 15 17 N -0.32 -6.50 12.58 30.63 0.39 -6.12 15 18 H 0.07 0.68 8.14 -51.93 -0.42 0.26 15 19 H 0.08 0.86 8.14 -51.93 -0.42 0.44 15 20 H 0.08 0.73 8.14 -51.93 -0.42 0.30 15 21 H 0.17 2.78 8.06 -52.49 -0.42 2.36 15 22 H 0.04 1.02 8.14 -51.93 -0.42 0.59 15 23 H 0.09 2.46 6.07 -51.93 -0.32 2.15 15 24 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 15 25 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 26 H 0.19 3.73 6.75 -52.49 -0.35 3.38 15 LS Contribution 232.32 15.07 3.50 3.50 Total: -1.00 -31.51 232.32 -3.79 -35.30 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -2.65 Total: -0.42 kcal Atomic # 6 Polarization: -9.84 SS G_CDS: -0.38 Total: -10.21 kcal Atomic # 7 Polarization: -38.36 SS G_CDS: 0.72 Total: -37.64 kcal Atomic # 9 Polarization: -6.50 SS G_CDS: 0.04 Total: -6.47 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -31.51 -3.79 -35.30 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047597.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.920 kcal (2) G-P(sol) polarization free energy of solvation -31.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds