Wall clock time and date at job start Mon Mar 30 2020 02:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34939 * 126.03518 * 2 1 4 4 C 1.35315 * 107.74580 * 180.02562 * 3 2 1 5 5 C 1.50695 * 126.04388 * 179.73639 * 4 3 2 6 6 C 1.53004 * 109.47074 * 75.00196 * 5 4 3 7 7 F 1.39905 * 109.47361 * 315.00297 * 5 4 3 8 8 C 1.50702 * 109.47468 * 195.00543 * 5 4 3 9 9 H 1.07994 * 119.99760 * 359.97438 * 8 5 4 10 10 C 1.37879 * 119.99831 * 180.02562 * 8 5 4 11 11 N 1.31508 * 120.00375 * 359.97438 * 10 8 5 12 12 Si 1.86806 * 119.99555 * 179.97438 * 10 8 5 13 13 H 1.48496 * 109.47369 * 59.99904 * 12 10 8 14 14 H 1.48508 * 109.46790 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47050 * 299.99461 * 12 10 8 16 16 C 1.39870 * 107.92072 * 0.02562 * 4 3 2 17 17 N 1.30839 * 108.20307 * 359.97438 * 16 4 3 18 18 H 1.08992 * 109.47485 * 89.99681 * 1 2 3 19 19 H 1.09007 * 109.46799 * 209.99867 * 1 2 3 20 20 H 1.08995 * 109.47116 * 329.99333 * 1 2 3 21 21 H 1.07999 * 126.13245 * 0.04834 * 3 2 1 22 22 H 1.09004 * 109.46946 * 60.00488 * 6 5 4 23 23 H 1.09004 * 109.47021 * 180.02562 * 6 5 4 24 24 H 1.09000 * 109.47205 * 300.00226 * 6 5 4 25 25 H 0.97004 * 120.00147 * 180.02562 * 11 10 8 26 26 H 1.08001 * 125.90246 * 179.97438 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7679 1.5452 -0.0064 6 6 4.9671 2.1516 1.3842 7 9 4.6013 2.5711 -0.9430 8 6 5.9756 0.7217 -0.3731 9 1 5.8675 -0.3326 -0.5807 10 6 7.2187 1.3141 -0.4424 11 7 7.3505 2.5978 -0.1891 12 14 8.7158 0.2931 -0.8962 13 1 8.5230 -0.2954 -2.2459 14 1 9.9222 1.1591 -0.9021 15 1 8.8923 -0.7957 0.0980 16 6 3.5346 -0.7321 -0.0015 17 7 2.2891 -1.1328 -0.0010 18 1 -0.3634 0.0001 -1.0276 19 1 -0.3633 -0.8901 0.5139 20 1 -0.3633 0.8899 0.5139 21 1 1.9281 2.1193 0.0007 22 1 5.0970 1.3523 2.1139 23 1 5.8524 2.7875 1.3798 24 1 4.0936 2.7472 1.6493 25 1 8.2250 3.0147 -0.2383 26 1 4.4054 -1.3711 -0.0026 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047597.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:21 Heat of formation + Delta-G solvation = 8.485042 kcal Electronic energy + Delta-G solvation = -12631.815721 eV Core-core repulsion = 10240.114954 eV Total energy + Delta-G solvation = -2391.700767 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.59634 -41.91500 -35.71695 -34.03975 -32.54353 -29.95818 -27.74888 -26.89965 -23.40522 -21.88148 -20.72260 -18.40773 -17.95887 -16.53301 -16.27831 -15.70727 -15.26053 -15.12963 -15.05469 -13.70539 -13.65194 -13.40904 -13.32734 -13.09376 -12.70840 -12.53733 -12.43133 -12.22798 -11.87857 -11.02835 -10.77633 -10.55579 -10.22114 -9.19612 -8.09608 -6.33227 0.99650 1.46566 1.48753 1.55867 1.79760 1.95716 2.44476 3.18224 3.75031 4.09307 4.40535 4.45473 4.49186 4.70641 4.74499 4.90818 4.97019 5.12926 5.13690 5.63290 5.73213 5.88496 6.02936 6.16569 6.33236 6.72099 6.83149 7.43034 8.92920 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.055830 B = 0.011175 C = 0.009969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.406278 B = 2505.061209 C = 2808.048006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.380 5.380 3 C 0.057 3.943 4 C -0.257 4.257 5 C 0.294 3.706 6 C -0.139 4.139 7 F -0.250 7.250 8 C -0.566 4.566 9 H 0.071 0.929 10 C 0.027 3.973 11 N -0.903 5.903 12 Si 0.962 3.038 13 H -0.274 1.274 14 H -0.283 1.283 15 H -0.263 1.263 16 C 0.060 3.940 17 N -0.330 5.330 18 H 0.084 0.916 19 H 0.095 0.905 20 H 0.113 0.887 21 H 0.193 0.807 22 H 0.046 0.954 23 H 0.066 0.934 24 H 0.036 0.964 25 H 0.264 0.736 26 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.058 -2.864 1.765 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.164 5.164 3 C -0.089 4.089 4 C -0.269 4.269 5 C 0.275 3.725 6 C -0.198 4.198 7 F -0.231 7.231 8 C -0.604 4.604 9 H 0.089 0.911 10 C -0.175 4.175 11 N -0.540 5.540 12 Si 0.786 3.214 13 H -0.199 1.199 14 H -0.209 1.209 15 H -0.188 1.188 16 C -0.125 4.125 17 N -0.153 5.153 18 H 0.103 0.897 19 H 0.113 0.887 20 H 0.131 0.869 21 H 0.210 0.790 22 H 0.065 0.935 23 H 0.085 0.915 24 H 0.055 0.945 25 H 0.073 0.927 26 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -10.916 -3.696 1.759 11.658 hybrid contribution 1.518 0.516 -0.343 1.639 sum -9.399 -3.180 1.416 10.022 Atomic orbital electron populations 1.22189 0.71753 1.05984 1.04506 1.48779 1.07829 1.02937 1.56812 1.22525 0.90469 0.94223 1.01726 1.20950 0.95293 0.95251 1.15365 1.16740 0.89658 0.81162 0.84921 1.22072 1.01083 1.00201 0.96398 1.92680 1.96678 1.63891 1.69812 1.21771 0.92283 0.96446 1.49906 0.91126 1.25821 1.01904 0.95958 0.93792 1.70053 1.24635 1.11406 1.47866 0.85566 0.78076 0.78696 0.79021 1.19906 1.20876 1.18796 1.23851 0.94882 0.94935 0.98831 1.77156 1.01792 1.09483 1.26851 0.89743 0.88666 0.86887 0.79036 0.93488 0.91526 0.94477 0.92685 0.79923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.83 11.47 127.77 1.47 3.30 15 2 N -0.38 -12.47 4.01 -369.57 -1.48 -13.95 15 3 C 0.06 2.10 11.27 83.54 0.94 3.04 15 4 C -0.26 -11.51 4.98 -20.15 -0.10 -11.61 15 5 C 0.29 15.28 1.14 -12.29 -0.01 15.27 15 6 C -0.14 -6.82 8.69 71.98 0.63 -6.20 15 7 F -0.25 -14.19 16.23 44.97 0.73 -13.46 15 8 C -0.57 -31.23 8.07 25.60 0.21 -31.03 15 9 H 0.07 3.73 5.89 -2.91 -0.02 3.71 15 10 C 0.03 1.49 5.27 84.66 0.45 1.93 15 11 N -0.90 -52.16 10.99 21.45 0.24 -51.93 15 12 Si 0.96 43.19 29.54 68.60 2.03 45.21 15 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 14 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 15 H -0.26 -11.26 7.11 99.48 0.71 -10.55 15 16 C 0.06 2.53 10.97 85.24 0.94 3.47 15 17 N -0.33 -12.85 12.58 -57.02 -0.72 -13.57 15 18 H 0.08 1.39 8.14 -2.39 -0.02 1.37 15 19 H 0.09 1.63 8.14 -2.38 -0.02 1.61 15 20 H 0.11 1.49 8.14 -2.39 -0.02 1.47 15 21 H 0.19 5.85 8.06 -2.91 -0.02 5.82 15 22 H 0.05 2.19 8.14 -2.38 -0.02 2.17 15 23 H 0.07 3.60 6.07 -2.39 -0.01 3.58 15 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 15 25 H 0.26 14.46 8.31 -92.71 -0.77 13.69 15 26 H 0.18 7.50 6.75 -2.91 -0.02 7.48 15 Total: -1.00 -67.27 232.32 6.48 -60.79 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.18 Total: 8.73 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 4.51 Total: -21.83 kcal Atomic # 7 Polarization: -77.48 SS G_CDS: -1.96 Total: -79.44 kcal Atomic # 9 Polarization: -14.19 SS G_CDS: 0.73 Total: -13.46 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Total: -67.27 6.48 -60.79 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047597.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.274 kcal (2) G-P(sol) polarization free energy of solvation -67.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds