Wall clock time and date at job start Mon Mar 30 2020 01:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.26976 * 2 1 4 4 C 1.52626 * 109.27133 * 119.51155 * 2 1 3 5 5 N 1.46236 * 110.53703 * 68.86696 * 4 2 1 6 6 C 1.36116 * 119.92335 * 217.41420 * 5 4 2 7 7 H 1.07998 * 119.99982 * 155.35968 * 6 5 4 8 8 C 1.39590 * 120.00650 * 335.36308 * 6 5 4 9 9 N 1.31017 * 119.99562 * 344.65044 * 8 6 5 10 10 Si 1.86796 * 120.00663 * 164.65169 * 8 6 5 11 11 H 1.48506 * 109.46850 * 59.99448 * 10 8 6 12 12 H 1.48487 * 109.47415 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46717 * 300.00098 * 10 8 6 14 14 C 1.34783 * 120.16590 * 37.46821 * 5 4 2 15 15 O 1.21508 * 120.42205 * 174.01873 * 14 5 4 16 16 C 1.49044 * 119.15290 * 354.00258 * 14 5 4 17 17 O 1.21444 * 120.42253 * 168.20769 * 16 14 5 18 18 N 1.34786 * 119.15344 * 348.22598 * 16 14 5 19 19 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47120 * 60.00058 * 1 2 3 21 21 H 1.09001 * 109.47422 * 299.99676 * 1 2 3 22 22 H 1.09004 * 109.26952 * 189.16189 * 4 2 1 23 23 H 1.08998 * 109.27033 * 308.63480 * 4 2 1 24 24 H 0.97000 * 120.00481 * 180.02562 * 9 8 6 25 25 H 0.97001 * 119.91157 * 174.02802 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8897 1.0289 0.0000 4 6 2.0337 -0.7097 1.2538 5 7 1.7370 -2.1401 1.1879 6 6 1.3696 -2.8100 2.3144 7 1 0.7826 -3.7134 2.2382 8 6 1.7513 -2.3295 3.5681 9 7 2.6964 -1.4272 3.6638 10 14 0.9147 -2.9728 5.1094 11 1 1.1217 -4.4399 5.2093 12 1 1.4976 -2.3087 6.3028 13 1 -0.5398 -2.6816 5.0413 14 6 1.8274 -2.7972 0.0145 15 8 1.6882 -4.0035 -0.0274 16 6 2.0999 -2.0251 -1.2309 17 8 2.3969 -2.6003 -2.2584 18 7 2.0129 -0.6804 -1.2020 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5138 0.8900 22 1 3.1113 -0.5692 1.3383 23 1 1.5460 -0.2820 2.1298 24 1 2.9620 -1.0934 4.5350 25 1 2.2715 -0.1621 -1.9802 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261052390.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:26 Heat of formation + Delta-G solvation = -60.643808 kcal Electronic energy + Delta-G solvation = -13047.881880 eV Core-core repulsion = 10640.810672 eV Total energy + Delta-G solvation = -2407.071209 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.03268 -37.23290 -36.36313 -34.06021 -31.56749 -30.29796 -26.52675 -25.74820 -22.91756 -21.74627 -18.14577 -17.45639 -17.06447 -16.14195 -15.11666 -15.00769 -14.03986 -13.96269 -13.59441 -13.22175 -12.60917 -12.30527 -11.79271 -11.67477 -11.30257 -11.01614 -10.88714 -10.52987 -10.43903 -10.13104 -9.20962 -8.77720 -8.34599 -7.93597 -6.60725 -4.08740 2.44429 3.12303 3.14281 3.17279 3.63901 3.94184 4.25131 4.54603 4.90930 5.17269 5.33411 5.45371 5.64418 6.05370 6.13385 6.46942 6.52269 6.83664 7.12475 7.32471 7.50531 7.88729 8.23773 8.57272 8.95785 9.11561 9.74040 10.43439 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.013753 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.481233 B = 2035.490178 C = 2345.151779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.114 3.886 3 H 0.097 0.903 4 C 0.119 3.881 5 N -0.408 5.408 6 C -0.311 4.311 7 H 0.104 0.896 8 C 0.037 3.963 9 N -0.865 5.865 10 Si 0.931 3.069 11 H -0.269 1.269 12 H -0.282 1.282 13 H -0.270 1.270 14 C 0.418 3.582 15 O -0.552 6.552 16 C 0.519 3.481 17 O -0.528 6.528 18 N -0.722 5.722 19 H 0.062 0.938 20 H 0.053 0.947 21 H 0.069 0.931 22 H 0.071 0.929 23 H 0.108 0.892 24 H 0.275 0.725 25 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.820 8.507 -0.509 8.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 H 0.115 0.885 4 C -0.005 4.005 5 N -0.129 5.129 6 C -0.440 4.440 7 H 0.122 0.878 8 C -0.169 4.169 9 N -0.502 5.502 10 Si 0.756 3.244 11 H -0.194 1.194 12 H -0.207 1.207 13 H -0.195 1.195 14 C 0.203 3.797 15 O -0.434 6.434 16 C 0.303 3.697 17 O -0.402 6.402 18 N -0.379 5.379 19 H 0.081 0.919 20 H 0.072 0.928 21 H 0.088 0.912 22 H 0.089 0.911 23 H 0.126 0.874 24 H 0.086 0.914 25 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -2.681 7.557 -0.755 8.054 hybrid contribution -0.117 0.238 0.537 0.599 sum -2.797 7.795 -0.218 8.285 Atomic orbital electron populations 1.22234 0.95121 1.03163 1.01694 1.21667 0.94897 0.97069 0.85563 0.88458 1.21707 1.01553 0.81883 0.95339 1.43485 1.55472 1.06798 1.07128 1.19707 1.30893 1.10925 0.82441 0.87810 1.25521 0.95035 0.96651 0.99706 1.69777 1.25075 1.29035 1.26354 0.85914 0.79461 0.79530 0.79468 1.19411 1.20684 1.19505 1.19550 0.88141 0.87883 0.84097 1.90631 1.54744 1.12953 1.85034 1.20996 0.76529 0.82087 0.90133 1.90691 1.47276 1.69758 1.32495 1.46310 1.67610 1.06769 1.17242 0.91899 0.92841 0.91181 0.91078 0.87435 0.91404 0.77102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.31 37.16 0.35 -2.06 15 2 C 0.11 1.76 3.76 -68.22 -0.26 1.51 15 3 H 0.10 1.13 8.14 -51.93 -0.42 0.71 15 4 C 0.12 2.40 4.24 -4.38 -0.02 2.38 15 5 N -0.41 -10.11 2.60 -115.91 -0.30 -10.41 15 6 C -0.31 -8.21 9.18 -15.15 -0.14 -8.35 15 7 H 0.10 2.88 7.53 -52.49 -0.40 2.48 15 8 C 0.04 0.91 4.95 -17.40 -0.09 0.82 15 9 N -0.86 -21.09 10.98 55.53 0.61 -20.49 15 10 Si 0.93 19.16 29.58 -169.99 -5.03 14.13 15 11 H -0.27 -5.69 7.11 56.52 0.40 -5.29 15 12 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 13 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 14 C 0.42 11.08 7.18 -11.77 -0.08 10.99 15 15 O -0.55 -16.81 16.77 -10.43 -0.17 -16.99 15 16 C 0.52 11.97 7.82 -11.77 -0.09 11.87 15 17 O -0.53 -13.57 17.83 -10.37 -0.18 -13.76 15 18 N -0.72 -12.43 5.25 -54.66 -0.29 -12.72 15 19 H 0.06 1.12 7.59 -51.93 -0.39 0.72 15 20 H 0.05 0.66 8.14 -51.93 -0.42 0.24 15 21 H 0.07 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.07 1.50 7.94 -51.93 -0.41 1.09 15 23 H 0.11 2.19 6.60 -51.93 -0.34 1.85 15 24 H 0.28 6.31 8.30 -40.82 -0.34 5.97 15 25 H 0.39 5.55 8.93 -40.82 -0.36 5.18 15 LS Contribution 222.09 15.07 3.35 3.35 Total: -1.00 -31.87 222.09 -4.66 -36.53 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -2.31 Total: 3.19 kcal Atomic # 6 Polarization: 17.50 SS G_CDS: -0.33 Total: 17.17 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: 0.02 Total: -43.62 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.36 Total: -30.75 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 3.35 Total: 3.35 kcal Total: -31.87 -4.66 -36.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052390.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.116 kcal (2) G-P(sol) polarization free energy of solvation -31.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds