Wall clock time and date at job start Mon Mar 30 2020 01:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.26976 * 2 1 4 4 C 1.52626 * 109.27133 * 119.51155 * 2 1 3 5 5 N 1.46236 * 110.53703 * 68.86696 * 4 2 1 6 6 C 1.36116 * 119.92335 * 217.41420 * 5 4 2 7 7 H 1.07998 * 119.99982 * 155.35968 * 6 5 4 8 8 C 1.39590 * 120.00650 * 335.36308 * 6 5 4 9 9 N 1.31017 * 119.99562 * 344.65044 * 8 6 5 10 10 Si 1.86796 * 120.00663 * 164.65169 * 8 6 5 11 11 H 1.48506 * 109.46850 * 59.99448 * 10 8 6 12 12 H 1.48487 * 109.47415 * 179.97438 * 10 8 6 13 13 H 1.48497 * 109.46717 * 300.00098 * 10 8 6 14 14 C 1.34783 * 120.16590 * 37.46821 * 5 4 2 15 15 O 1.21508 * 120.42205 * 174.01873 * 14 5 4 16 16 C 1.49044 * 119.15290 * 354.00258 * 14 5 4 17 17 O 1.21444 * 120.42253 * 168.20769 * 16 14 5 18 18 N 1.34786 * 119.15344 * 348.22598 * 16 14 5 19 19 H 1.09005 * 109.47098 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47120 * 60.00058 * 1 2 3 21 21 H 1.09001 * 109.47422 * 299.99676 * 1 2 3 22 22 H 1.09004 * 109.26952 * 189.16189 * 4 2 1 23 23 H 1.08998 * 109.27033 * 308.63480 * 4 2 1 24 24 H 0.97000 * 120.00481 * 180.02562 * 9 8 6 25 25 H 0.97001 * 119.91157 * 174.02802 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8897 1.0289 0.0000 4 6 2.0337 -0.7097 1.2538 5 7 1.7370 -2.1401 1.1879 6 6 1.3696 -2.8100 2.3144 7 1 0.7826 -3.7134 2.2382 8 6 1.7513 -2.3295 3.5681 9 7 2.6964 -1.4272 3.6638 10 14 0.9147 -2.9728 5.1094 11 1 1.1217 -4.4399 5.2093 12 1 1.4976 -2.3087 6.3028 13 1 -0.5398 -2.6816 5.0413 14 6 1.8274 -2.7972 0.0145 15 8 1.6882 -4.0035 -0.0274 16 6 2.0999 -2.0251 -1.2309 17 8 2.3969 -2.6003 -2.2584 18 7 2.0129 -0.6804 -1.2020 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3634 0.5138 0.8900 22 1 3.1113 -0.5692 1.3383 23 1 1.5460 -0.2820 2.1298 24 1 2.9620 -1.0934 4.5350 25 1 2.2715 -0.1621 -1.9802 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261052390.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:25 Heat of formation + Delta-G solvation = -84.930932 kcal Electronic energy + Delta-G solvation = -13048.935049 eV Core-core repulsion = 10640.810672 eV Total energy + Delta-G solvation = -2408.124377 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.81811 -39.11498 -38.14981 -35.93831 -33.51469 -31.79061 -28.31571 -27.43869 -24.77842 -23.31953 -19.99640 -19.13952 -18.87986 -17.88903 -16.96126 -16.86669 -15.83325 -15.65193 -15.19525 -15.03304 -14.32294 -13.83676 -13.60391 -13.17570 -12.95444 -12.74667 -12.50800 -12.19780 -12.11037 -11.88927 -11.08591 -10.40410 -10.27796 -9.85331 -8.53626 -6.12280 0.55882 1.44597 1.46649 1.54504 2.03727 2.22253 2.35442 2.74056 2.99937 3.67067 3.80919 4.14182 4.34965 4.81493 4.89923 4.92789 5.14408 5.31364 5.33634 5.59173 5.90259 5.95802 6.34426 6.85965 7.01973 7.17681 7.77769 8.48418 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045930 B = 0.013753 C = 0.011937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.481233 B = 2035.490178 C = 2345.151779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.118 3.882 3 H 0.159 0.841 4 C 0.115 3.885 5 N -0.400 5.400 6 C -0.354 4.354 7 H 0.076 0.924 8 C 0.016 3.984 9 N -0.867 5.867 10 Si 0.995 3.005 11 H -0.281 1.281 12 H -0.262 1.262 13 H -0.259 1.259 14 C 0.385 3.615 15 O -0.617 6.617 16 C 0.523 3.477 17 O -0.564 6.564 18 N -0.691 5.691 19 H 0.022 0.978 20 H 0.084 0.916 21 H 0.089 0.911 22 H 0.062 0.938 23 H 0.108 0.892 24 H 0.287 0.713 25 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.084 11.323 0.590 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.014 3.986 3 H 0.176 0.824 4 C -0.008 4.008 5 N -0.118 5.118 6 C -0.482 4.482 7 H 0.094 0.906 8 C -0.191 4.191 9 N -0.502 5.502 10 Si 0.817 3.183 11 H -0.206 1.206 12 H -0.186 1.186 13 H -0.183 1.183 14 C 0.171 3.829 15 O -0.504 6.504 16 C 0.306 3.694 17 O -0.442 6.442 18 N -0.349 5.349 19 H 0.041 0.959 20 H 0.103 0.897 21 H 0.108 0.892 22 H 0.080 0.920 23 H 0.126 0.874 24 H 0.098 0.902 25 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -2.931 10.501 0.350 10.908 hybrid contribution 0.010 -0.539 0.358 0.647 sum -2.921 9.963 0.709 10.406 Atomic orbital electron populations 1.22224 0.94024 1.01333 1.04264 1.21922 0.95693 0.98645 0.82335 0.82371 1.21920 1.01211 0.79469 0.98199 1.43785 1.53019 1.08662 1.06380 1.19727 1.32745 1.11642 0.84099 0.90623 1.26260 0.94946 0.96306 1.01577 1.69810 1.24285 1.28233 1.27909 0.84981 0.79097 0.78242 0.76015 1.20620 1.18633 1.18340 1.20238 0.89020 0.87809 0.85791 1.90555 1.58124 1.15517 1.86206 1.20391 0.76913 0.83809 0.88268 1.90662 1.49521 1.70985 1.32998 1.46032 1.65501 1.04614 1.18713 0.95898 0.89719 0.89231 0.91976 0.87386 0.90220 0.74356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.20 9.31 71.98 0.67 -3.53 15 2 C 0.12 3.24 3.76 44.90 0.17 3.41 15 3 H 0.16 2.65 8.14 -2.39 -0.02 2.63 15 4 C 0.11 4.44 4.24 86.31 0.37 4.80 15 5 N -0.40 -20.22 2.60 -638.91 -1.66 -21.88 15 6 C -0.35 -19.16 9.18 84.35 0.77 -18.39 15 7 H 0.08 4.45 7.53 -2.91 -0.02 4.43 15 8 C 0.02 0.77 4.95 85.14 0.42 1.19 15 9 N -0.87 -40.77 10.98 21.77 0.24 -40.53 15 10 Si 0.99 38.25 29.58 68.60 2.03 40.28 15 11 H -0.28 -11.34 7.11 99.48 0.71 -10.63 15 12 H -0.26 -9.26 7.11 99.48 0.71 -8.56 15 13 H -0.26 -9.53 7.11 99.48 0.71 -8.83 15 14 C 0.38 21.23 7.18 87.14 0.63 21.85 15 15 O -0.62 -40.08 16.77 11.35 0.19 -39.89 15 16 C 0.52 24.35 7.82 87.14 0.68 25.03 15 17 O -0.56 -29.59 17.83 11.55 0.21 -29.38 15 18 N -0.69 -22.13 5.25 -445.16 -2.34 -24.47 15 19 H 0.02 0.77 7.59 -2.38 -0.02 0.76 15 20 H 0.08 1.73 8.14 -2.39 -0.02 1.71 15 21 H 0.09 2.02 8.14 -2.39 -0.02 2.00 15 22 H 0.06 2.52 7.94 -2.39 -0.02 2.50 15 23 H 0.11 4.16 6.60 -2.39 -0.02 4.14 15 24 H 0.29 12.37 8.30 -92.71 -0.77 11.60 15 25 H 0.42 10.22 8.93 -92.71 -0.83 9.39 15 Total: -1.00 -73.12 222.09 2.76 -70.36 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: 0.39 Total: 11.13 kcal Atomic # 6 Polarization: 30.67 SS G_CDS: 3.71 Total: 34.38 kcal Atomic # 7 Polarization: -83.11 SS G_CDS: -3.76 Total: -86.87 kcal Atomic # 8 Polarization: -69.67 SS G_CDS: 0.40 Total: -69.27 kcal Atomic # 14 Polarization: 38.25 SS G_CDS: 2.03 Total: 40.28 kcal Total: -73.12 2.76 -70.36 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261052390.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.572 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds