Wall clock time and date at job start Mon Mar 30 2020 01:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 110.53902 * 2 1 4 4 C 1.51585 * 110.59880 * 237.17167 * 2 1 3 5 5 O 1.21234 * 127.15504 * 61.51026 * 4 2 1 6 6 N 1.34769 * 105.68804 * 241.47586 * 4 2 1 7 7 C 1.33790 * 111.64081 * 0.23043 * 6 4 2 8 8 O 1.21543 * 123.76780 * 179.76926 * 7 6 4 9 9 N 1.34530 * 112.45904 * 359.59781 * 7 6 4 10 10 C 1.46497 * 126.68863 * 180.12838 * 9 7 6 11 11 C 1.50704 * 109.47301 * 270.30348 * 10 9 7 12 12 H 1.08002 * 119.99201 * 0.02562 * 11 10 9 13 13 C 1.37869 * 120.00050 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00000 * 179.97438 * 13 11 10 15 15 Si 1.86801 * 120.00299 * 359.97438 * 13 11 10 16 16 H 1.48506 * 109.46963 * 89.99917 * 15 13 11 17 17 H 1.48500 * 109.47461 * 209.99704 * 15 13 11 18 18 H 1.48495 * 109.47032 * 330.00136 * 15 13 11 19 19 H 1.08999 * 109.47691 * 181.37360 * 1 2 3 20 20 H 1.09003 * 109.47088 * 301.37471 * 1 2 3 21 21 H 1.09000 * 109.47349 * 61.37123 * 1 2 3 22 22 H 0.97001 * 124.17633 * 179.97438 * 6 4 2 23 23 H 1.09000 * 109.47386 * 30.30236 * 10 9 7 24 24 H 1.08998 * 109.46885 * 150.30560 * 10 9 7 25 25 H 0.97001 * 120.00202 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9124 1.0207 0.0000 4 6 2.0633 -0.7692 -1.1923 5 8 1.8895 -0.5151 -2.3649 6 7 2.7715 -1.7939 -0.6778 7 6 2.7557 -1.7820 0.6600 8 8 3.3203 -2.6083 1.3496 9 7 2.0482 -0.7511 1.1564 10 6 1.8305 -0.4397 2.5713 11 6 0.5876 -1.1416 3.0547 12 1 0.0173 -1.7584 2.3759 13 6 0.1788 -0.9964 4.3633 14 7 -0.9061 -1.6086 4.7851 15 14 1.1657 0.0698 5.5375 16 1 0.6583 1.4645 5.4850 17 1 1.0266 -0.4558 6.9194 18 1 2.5967 0.0485 5.1415 19 1 -0.3634 -1.0273 0.0246 20 1 -0.3633 0.5351 0.8774 21 1 -0.3634 0.4924 -0.9020 22 1 3.2323 -2.4600 -1.2114 23 1 2.6879 -0.7768 3.1537 24 1 1.7099 0.6369 2.6919 25 1 -1.1936 -1.5068 5.7059 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066675.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:02 Heat of formation + Delta-G solvation = -69.776663 kcal Electronic energy + Delta-G solvation = -12732.051208 eV Core-core repulsion = 10324.583969 eV Total energy + Delta-G solvation = -2407.467239 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.23455 -39.65943 -37.44617 -36.02730 -34.49911 -32.11846 -29.83374 -25.82755 -25.02655 -22.48082 -21.83227 -19.27188 -19.02221 -17.78057 -17.34826 -16.78016 -16.53400 -15.68100 -15.44507 -15.10855 -14.48986 -14.21270 -13.75385 -13.31862 -13.00080 -12.87826 -12.48313 -12.01928 -11.85967 -11.66682 -11.42857 -11.18835 -10.77006 -9.76724 -8.28480 -6.35373 0.60018 1.37074 1.40895 1.48164 1.54742 2.05588 2.16739 2.36523 3.03711 3.09843 3.85784 4.03685 4.31378 4.72627 4.80595 4.87878 5.08902 5.12585 5.31507 5.41046 5.50605 6.16825 6.25277 6.44051 6.68150 7.15157 7.30663 8.87828 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049582 B = 0.011417 C = 0.010529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.586243 B = 2451.790233 C = 2658.798523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.090 3.910 3 H 0.161 0.839 4 C 0.541 3.459 5 O -0.494 6.494 6 N -0.669 5.669 7 C 0.690 3.310 8 O -0.591 6.591 9 N -0.600 5.600 10 C 0.254 3.746 11 C -0.540 4.540 12 H 0.035 0.965 13 C 0.015 3.985 14 N -0.944 5.944 15 Si 0.944 3.056 16 H -0.251 1.251 17 H -0.289 1.289 18 H -0.246 1.246 19 H 0.038 0.962 20 H 0.079 0.921 21 H 0.099 0.901 22 H 0.437 0.563 23 H 0.036 0.964 24 H 0.071 0.929 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.695 6.988 -8.425 12.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.016 4.016 3 H 0.178 0.822 4 C 0.328 3.672 5 O -0.366 6.366 6 N -0.339 5.339 7 C 0.391 3.609 8 O -0.469 6.469 9 N -0.337 5.337 10 C 0.134 3.866 11 C -0.578 4.578 12 H 0.053 0.947 13 C -0.184 4.184 14 N -0.584 5.584 15 Si 0.766 3.234 16 H -0.175 1.175 17 H -0.215 1.215 18 H -0.170 1.170 19 H 0.057 0.943 20 H 0.098 0.902 21 H 0.118 0.882 22 H 0.281 0.719 23 H 0.054 0.946 24 H 0.089 0.911 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.706 6.799 -8.341 12.180 hybrid contribution 0.156 -0.597 0.554 0.829 sum 5.862 6.202 -7.787 11.553 Atomic orbital electron populations 1.21824 0.90264 1.02647 1.04597 1.22351 0.98322 0.99085 0.81889 0.82178 1.20895 0.76159 0.80390 0.89713 1.90790 1.58270 1.70205 1.17301 1.44182 1.51215 1.30740 1.07772 1.16104 0.80448 0.82546 0.81827 1.90934 1.51599 1.42536 1.61822 1.47954 1.51058 1.27031 1.07656 1.19405 0.95714 0.97544 0.73929 1.21536 1.09432 1.30229 0.96642 0.94659 1.25795 0.95815 0.97005 0.99772 1.70047 1.25571 1.44966 1.17774 0.85773 0.80303 0.79562 0.77716 1.17517 1.21483 1.16973 0.94257 0.90190 0.88192 0.71932 0.94600 0.91077 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.89 9.09 71.98 0.65 -3.23 15 2 C 0.09 2.52 4.05 44.37 0.18 2.70 15 3 H 0.16 3.28 8.14 -2.39 -0.02 3.26 15 4 C 0.54 15.25 8.14 87.94 0.72 15.96 15 5 O -0.49 -14.99 18.02 -2.89 -0.05 -15.04 15 6 N -0.67 -19.65 5.70 -441.11 -2.52 -22.16 15 7 C 0.69 26.71 8.68 179.44 1.56 28.26 15 8 O -0.59 -27.89 17.72 -3.85 -0.07 -27.96 15 9 N -0.60 -22.48 2.73 -822.13 -2.25 -24.73 15 10 C 0.25 10.89 4.81 85.64 0.41 11.30 15 11 C -0.54 -28.86 9.55 25.60 0.24 -28.62 15 12 H 0.04 2.14 8.06 -2.91 -0.02 2.12 15 13 C 0.01 0.80 5.47 84.65 0.46 1.26 15 14 N -0.94 -56.52 13.96 21.44 0.30 -56.22 15 15 Si 0.94 40.27 27.47 68.60 1.88 42.16 15 16 H -0.25 -9.79 7.11 99.48 0.71 -9.08 15 17 H -0.29 -12.58 7.11 99.48 0.71 -11.87 15 18 H -0.25 -9.76 6.54 99.48 0.65 -9.11 15 19 H 0.04 1.33 8.14 -2.39 -0.02 1.31 15 20 H 0.08 2.48 8.14 -2.39 -0.02 2.46 15 21 H 0.10 2.24 8.14 -2.39 -0.02 2.22 15 22 H 0.44 10.42 8.96 -92.71 -0.83 9.59 15 23 H 0.04 1.63 7.09 -2.39 -0.02 1.62 15 24 H 0.07 2.61 7.57 -2.39 -0.02 2.59 15 25 H 0.27 15.00 8.31 -92.71 -0.77 14.23 15 Total: -1.00 -68.85 228.71 1.86 -66.99 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.33 Total: 9.33 kcal Atomic # 6 Polarization: 23.41 SS G_CDS: 4.23 Total: 27.64 kcal Atomic # 7 Polarization: -98.65 SS G_CDS: -4.46 Total: -103.11 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.12 Total: -43.00 kcal Atomic # 14 Polarization: 40.27 SS G_CDS: 1.88 Total: 42.16 kcal Total: -68.85 1.86 -66.99 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066675.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.787 kcal (2) G-P(sol) polarization free energy of solvation -68.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds