Wall clock time and date at job start Mon Mar 30 2020 01:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.65011 * 2 1 4 4 C 1.51579 * 110.59780 * 122.90957 * 2 1 3 5 5 O 1.21233 * 127.16311 * 298.56737 * 4 2 1 6 6 N 1.34773 * 105.68013 * 118.30312 * 4 2 1 7 7 C 1.33795 * 111.64536 * 0.22635 * 6 4 2 8 8 O 1.21538 * 123.77059 * 179.97438 * 7 6 4 9 9 N 1.34523 * 112.45569 * 359.97438 * 7 6 4 10 10 C 1.46504 * 126.68575 * 180.02562 * 9 7 6 11 11 C 1.50703 * 109.46603 * 89.98208 * 10 9 7 12 12 H 1.07997 * 120.00398 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99689 * 179.97438 * 11 10 9 14 14 N 1.31512 * 119.99934 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00039 * 179.97438 * 13 11 10 16 16 H 1.48505 * 109.46984 * 0.02562 * 15 13 11 17 17 H 1.48500 * 109.46781 * 120.00013 * 15 13 11 18 18 H 1.48497 * 109.47141 * 240.00306 * 15 13 11 19 19 H 1.09004 * 109.47577 * 298.54284 * 1 2 3 20 20 H 1.09002 * 109.47579 * 58.54272 * 1 2 3 21 21 H 1.09007 * 109.47152 * 178.53881 * 1 2 3 22 22 H 0.97003 * 124.17604 * 180.26125 * 6 4 2 23 23 H 1.09001 * 109.46894 * 209.97802 * 10 9 7 24 24 H 1.08993 * 109.47619 * 329.98286 * 10 9 7 25 25 H 0.97002 * 119.99754 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0632 -0.7709 1.1912 5 8 1.8884 -0.5193 2.3642 6 7 2.7673 -1.7977 0.6750 7 6 2.7571 -1.7799 -0.6628 8 8 3.3232 -2.6041 -1.3537 9 7 2.0502 -0.7479 -1.1576 10 6 1.8354 -0.4323 -2.5720 11 6 0.5899 -1.1278 -3.0581 12 1 0.0161 -1.7435 -2.3814 13 6 0.1830 -0.9779 -4.3669 14 7 0.8820 -0.2285 -5.1912 15 14 -1.3604 -1.8405 -4.9698 16 1 -1.9605 -2.6176 -3.8556 17 1 -2.3368 -0.8298 -5.4499 18 1 -1.0112 -2.7593 -6.0829 19 1 -0.3634 0.4910 0.9028 20 1 -0.3634 0.5363 -0.8766 21 1 -0.3634 -1.0274 -0.0262 22 1 3.2245 -2.4672 1.2077 23 1 1.7196 0.6450 -2.6904 24 1 2.6919 -0.7719 -3.1543 25 1 0.5959 -0.1234 -6.1121 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066677.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:04 Heat of formation + Delta-G solvation = -73.180772 kcal Electronic energy + Delta-G solvation = -12707.430182 eV Core-core repulsion = 10299.815330 eV Total energy + Delta-G solvation = -2407.614852 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.20272 -39.63140 -37.40580 -36.01082 -34.50441 -31.90849 -29.35559 -25.81907 -25.33003 -22.45386 -21.91698 -19.22791 -18.65285 -17.72697 -17.28629 -16.76632 -16.63750 -15.48845 -15.42765 -15.18967 -14.45082 -14.00807 -13.52186 -13.27579 -12.92991 -12.86087 -12.62997 -12.13058 -11.85457 -11.68370 -11.41002 -11.14939 -10.62054 -9.77360 -8.22082 -6.34633 0.61854 1.41375 1.42652 1.46902 1.56322 2.07271 2.19637 2.43253 3.08166 3.12918 3.89080 4.06143 4.37521 4.79466 4.87360 5.11334 5.14212 5.26390 5.32207 5.52129 5.77323 6.01807 6.24463 6.46136 6.73142 7.19427 7.37890 8.85625 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048128 B = 0.011019 C = 0.010142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.645331 B = 2540.390324 C = 2760.160283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.087 3.913 3 H 0.149 0.851 4 C 0.542 3.458 5 O -0.494 6.494 6 N -0.668 5.668 7 C 0.688 3.312 8 O -0.594 6.594 9 N -0.602 5.602 10 C 0.290 3.710 11 C -0.542 4.542 12 H 0.059 0.941 13 C 0.016 3.984 14 N -0.925 5.925 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.271 1.271 18 H -0.285 1.285 19 H 0.099 0.901 20 H 0.079 0.921 21 H 0.048 0.952 22 H 0.437 0.563 23 H 0.047 0.953 24 H 0.013 0.987 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 1.787 9.776 9.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.019 4.019 3 H 0.166 0.834 4 C 0.330 3.670 5 O -0.366 6.366 6 N -0.338 5.338 7 C 0.388 3.612 8 O -0.472 6.472 9 N -0.339 5.339 10 C 0.171 3.829 11 C -0.580 4.580 12 H 0.077 0.923 13 C -0.184 4.184 14 N -0.564 5.564 15 Si 0.787 3.213 16 H -0.193 1.193 17 H -0.197 1.197 18 H -0.211 1.211 19 H 0.118 0.882 20 H 0.098 0.902 21 H 0.068 0.932 22 H 0.280 0.720 23 H 0.065 0.935 24 H 0.031 0.969 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.938 1.695 9.652 9.844 hybrid contribution -0.244 -0.874 -0.482 1.027 sum -1.182 0.822 9.170 9.282 Atomic orbital electron populations 1.21833 0.89737 1.03109 1.04597 1.22316 0.98811 0.98750 0.82051 0.83366 1.20861 0.76166 0.80389 0.89633 1.90784 1.58300 1.70360 1.17198 1.44180 1.51475 1.30429 1.07759 1.16134 0.80504 0.82749 0.81781 1.90927 1.51501 1.43015 1.61748 1.48282 1.50863 1.26765 1.08013 1.18828 0.95724 0.96566 0.71744 1.21714 1.09797 1.30224 0.96279 0.92320 1.25707 1.00286 0.95824 0.96601 1.70019 1.40537 1.39742 1.06110 0.85442 0.79218 0.78441 0.78165 1.19269 1.19661 1.21067 0.88250 0.90202 0.93247 0.71968 0.93477 0.96903 0.92275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 9.09 71.98 0.65 -3.09 15 2 C 0.09 2.58 4.04 44.37 0.18 2.76 15 3 H 0.15 3.56 8.14 -2.39 -0.02 3.54 15 4 C 0.54 15.64 8.14 87.94 0.72 16.36 15 5 O -0.49 -15.21 18.02 -2.88 -0.05 -15.26 15 6 N -0.67 -20.08 5.70 -441.12 -2.52 -22.59 15 7 C 0.69 27.53 8.68 179.44 1.56 29.09 15 8 O -0.59 -28.95 17.71 -3.84 -0.07 -29.02 15 9 N -0.60 -23.89 2.73 -822.13 -2.25 -26.14 15 10 C 0.29 14.03 5.75 85.63 0.49 14.52 15 11 C -0.54 -28.32 8.99 25.60 0.23 -28.09 15 12 H 0.06 3.06 7.81 -2.91 -0.02 3.04 15 13 C 0.02 0.83 5.46 84.66 0.46 1.29 15 14 N -0.92 -51.82 13.29 21.45 0.28 -51.53 15 15 Si 0.96 42.17 29.54 68.60 2.03 44.19 15 16 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 17 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 18 H -0.28 -12.54 7.11 99.48 0.71 -11.83 15 19 H 0.10 2.15 8.14 -2.39 -0.02 2.13 15 20 H 0.08 2.41 8.14 -2.39 -0.02 2.39 15 21 H 0.05 1.51 8.14 -2.38 -0.02 1.49 15 22 H 0.44 10.60 8.96 -92.71 -0.83 9.77 15 23 H 0.05 2.24 8.14 -2.39 -0.02 2.22 15 24 H 0.01 0.71 8.03 -2.39 -0.02 0.69 15 25 H 0.27 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -64.17 232.31 2.10 -62.07 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: 0.38 Total: 5.44 kcal Atomic # 6 Polarization: 28.55 SS G_CDS: 4.29 Total: 32.84 kcal Atomic # 7 Polarization: -95.78 SS G_CDS: -4.48 Total: -100.26 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -0.12 Total: -44.28 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.17 2.10 -62.07 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066677.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.109 kcal (2) G-P(sol) polarization free energy of solvation -64.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds