Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47012 * 2 1 4 4 C 1.47304 * 126.69283 * 269.97475 * 3 2 1 5 5 C 1.51584 * 103.59633 * 179.84524 * 4 3 2 6 6 O 1.21228 * 127.16098 * 180.24368 * 5 4 3 7 7 N 1.34766 * 105.68262 * 0.32300 * 5 4 3 8 8 C 1.37512 * 124.18073 * 179.97438 * 7 5 4 9 9 H 1.07998 * 120.00469 * 146.91497 * 8 7 5 10 10 C 1.38898 * 119.99758 * 326.91914 * 8 7 5 11 11 N 1.31386 * 120.00097 * 340.27378 * 10 8 7 12 12 Si 1.86801 * 120.00244 * 160.27919 * 10 8 7 13 13 H 1.48505 * 109.46827 * 265.59743 * 12 10 8 14 14 H 1.48500 * 109.46741 * 25.59298 * 12 10 8 15 15 H 1.48500 * 109.47226 * 145.59432 * 12 10 8 16 16 C 1.33793 * 111.64307 * 359.65991 * 7 5 4 17 17 O 1.21525 * 123.77045 * 180.22952 * 16 7 5 18 18 H 1.08993 * 109.47094 * 300.00362 * 1 2 3 19 19 H 1.09001 * 109.46975 * 59.99750 * 1 2 3 20 20 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46810 * 239.99782 * 2 1 3 22 22 H 1.08998 * 109.46509 * 120.00062 * 2 1 3 23 23 H 1.09002 * 110.60511 * 298.57015 * 4 3 2 24 24 H 1.09009 * 110.59955 * 61.36125 * 4 3 2 25 25 H 0.97003 * 120.00152 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3122 2.2109 -1.1812 5 6 2.7730 3.5269 -0.5865 6 8 3.1189 4.5210 -1.1879 7 7 2.7197 3.3613 0.7499 8 6 3.0614 4.3313 1.6627 9 1 2.5439 4.3887 2.6089 10 6 4.0721 5.2372 1.3678 11 7 4.9512 4.9590 0.4319 12 14 4.1817 6.8511 2.3021 13 1 3.4759 7.9128 1.5405 14 1 3.5485 6.6947 3.6362 15 1 5.6078 7.2287 2.4723 16 6 2.2868 2.1388 1.0787 17 8 2.1511 1.7556 2.2240 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.1032 1.7593 -1.7799 24 1 1.4138 2.3556 -1.7813 25 1 5.6573 5.5915 0.2262 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261085056.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = -34.044312 kcal Electronic energy + Delta-G solvation = -12924.868821 eV Core-core repulsion = 10518.951053 eV Total energy + Delta-G solvation = -2405.917768 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.93068 -37.06726 -35.30110 -34.27839 -32.45586 -30.34506 -26.67529 -25.33953 -22.93708 -21.08685 -19.59221 -17.48019 -16.07079 -15.69259 -15.38205 -14.55945 -14.39189 -13.81245 -13.28361 -13.03457 -12.82198 -12.80223 -11.92609 -11.78178 -11.51056 -11.03299 -10.92894 -10.72763 -10.36400 -9.59001 -9.24887 -8.71548 -8.30524 -7.88506 -6.39254 -4.14635 3.04682 3.20791 3.24077 3.31835 3.38802 4.14575 4.42257 4.64037 5.06547 5.21557 5.40717 5.47069 5.57150 5.79387 5.83248 5.84201 6.08672 6.36488 6.81216 7.32050 7.50861 8.01536 8.24379 8.78139 9.07847 9.24169 9.84434 10.70919 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.058510 B = 0.012331 C = 0.010882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.439210 B = 2270.077631 C = 2572.500582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.151 3.849 3 N -0.643 5.643 4 C 0.065 3.935 5 C 0.487 3.513 6 O -0.468 6.468 7 N -0.409 5.409 8 C -0.351 4.351 9 H 0.103 0.897 10 C 0.057 3.943 11 N -0.830 5.830 12 Si 0.932 3.068 13 H -0.274 1.274 14 H -0.267 1.267 15 H -0.282 1.282 16 C 0.676 3.324 17 O -0.572 6.572 18 H 0.060 0.940 19 H 0.054 0.946 20 H 0.063 0.937 21 H 0.075 0.925 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.096 0.904 25 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.192 -6.507 -3.857 9.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.029 3.971 3 N -0.385 5.385 4 C -0.063 4.063 5 C 0.274 3.726 6 O -0.339 6.339 7 N -0.140 5.140 8 C -0.477 4.477 9 H 0.120 0.880 10 C -0.154 4.154 11 N -0.462 5.462 12 Si 0.757 3.243 13 H -0.200 1.200 14 H -0.191 1.191 15 H -0.208 1.208 16 C 0.381 3.619 17 O -0.450 6.450 18 H 0.079 0.921 19 H 0.074 0.926 20 H 0.082 0.918 21 H 0.093 0.907 22 H 0.099 0.901 23 H 0.115 0.885 24 H 0.114 0.886 25 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.908 -6.162 -3.621 8.670 hybrid contribution 0.198 0.617 0.226 0.686 sum -4.710 -5.545 -3.395 8.029 Atomic orbital electron populations 1.22220 0.96507 1.01676 1.02566 1.21046 0.93577 0.79815 1.02646 1.47635 1.70965 1.13635 1.06251 1.22401 1.02030 0.91634 0.90202 1.20253 0.80670 0.88562 0.83140 1.90606 1.44437 1.32815 1.66080 1.41885 1.53919 1.10481 1.07759 1.19374 1.20056 1.07608 1.00672 0.87978 1.25344 0.93355 1.00044 0.96704 1.69918 1.11732 1.35110 1.29463 0.85862 0.77511 0.81349 0.79548 1.20011 1.19149 1.20799 1.16421 0.79488 0.81341 0.84631 1.90770 1.59694 1.75221 1.19280 0.92084 0.92647 0.91815 0.90684 0.90108 0.88467 0.88581 0.91767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 15 2 C 0.15 2.17 6.87 -4.04 -0.03 2.14 15 3 N -0.64 -12.45 3.02 -180.02 -0.54 -13.00 15 4 C 0.06 1.19 7.66 -4.32 -0.03 1.15 15 5 C 0.49 12.27 7.58 -10.56 -0.08 12.19 15 6 O -0.47 -13.14 15.42 5.60 0.09 -13.05 15 7 N -0.41 -11.16 2.69 -65.57 -0.18 -11.33 15 8 C -0.35 -10.23 9.46 -14.76 -0.14 -10.36 15 9 H 0.10 2.96 7.90 -52.49 -0.41 2.54 15 10 C 0.06 1.60 4.82 -17.50 -0.08 1.51 15 11 N -0.83 -24.39 11.20 55.49 0.62 -23.77 15 12 Si 0.93 21.63 29.60 -169.99 -5.03 16.60 15 13 H -0.27 -6.34 7.11 56.52 0.40 -5.93 15 14 H -0.27 -6.01 7.11 56.52 0.40 -5.61 15 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 15 16 C 0.68 16.94 8.26 -88.02 -0.73 16.22 15 17 O -0.57 -15.73 17.29 5.34 0.09 -15.64 15 18 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 19 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 20 H 0.06 0.62 8.14 -51.93 -0.42 0.20 15 21 H 0.07 0.83 8.14 -51.93 -0.42 0.41 15 22 H 0.08 1.21 8.03 -51.93 -0.42 0.80 15 23 H 0.10 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.10 1.46 8.14 -51.92 -0.42 1.03 15 25 H 0.27 7.52 8.31 -40.82 -0.34 7.18 15 LS Contribution 228.50 15.07 3.44 3.44 Total: -1.00 -34.43 228.50 -4.72 -39.16 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -2.50 Total: -3.50 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: -0.71 Total: 21.09 kcal Atomic # 7 Polarization: -48.00 SS G_CDS: -0.10 Total: -48.10 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: 0.18 Total: -28.69 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -34.43 -4.72 -39.16 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085056.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.111 kcal (2) G-P(sol) polarization free energy of solvation -34.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds