Wall clock time and date at job start Mon Mar 30 2020 01:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46495 * 109.47012 * 2 1 4 4 C 1.47304 * 126.69283 * 269.97475 * 3 2 1 5 5 C 1.51584 * 103.59633 * 179.84524 * 4 3 2 6 6 O 1.21228 * 127.16098 * 180.24368 * 5 4 3 7 7 N 1.34766 * 105.68262 * 0.32300 * 5 4 3 8 8 C 1.37512 * 124.18073 * 179.97438 * 7 5 4 9 9 H 1.07998 * 120.00469 * 146.91497 * 8 7 5 10 10 C 1.38898 * 119.99758 * 326.91914 * 8 7 5 11 11 N 1.31386 * 120.00097 * 340.27378 * 10 8 7 12 12 Si 1.86801 * 120.00244 * 160.27919 * 10 8 7 13 13 H 1.48505 * 109.46827 * 265.59743 * 12 10 8 14 14 H 1.48500 * 109.46741 * 25.59298 * 12 10 8 15 15 H 1.48500 * 109.47226 * 145.59432 * 12 10 8 16 16 C 1.33793 * 111.64307 * 359.65991 * 7 5 4 17 17 O 1.21525 * 123.77045 * 180.22952 * 16 7 5 18 18 H 1.08993 * 109.47094 * 300.00362 * 1 2 3 19 19 H 1.09001 * 109.46975 * 59.99750 * 1 2 3 20 20 H 1.08996 * 109.47364 * 179.97438 * 1 2 3 21 21 H 1.09001 * 109.46810 * 239.99782 * 2 1 3 22 22 H 1.08998 * 109.46509 * 120.00062 * 2 1 3 23 23 H 1.09002 * 110.60511 * 298.57015 * 4 3 2 24 24 H 1.09009 * 110.59955 * 61.36125 * 4 3 2 25 25 H 0.97003 * 120.00152 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3122 2.2109 -1.1812 5 6 2.7730 3.5269 -0.5865 6 8 3.1189 4.5210 -1.1879 7 7 2.7197 3.3613 0.7499 8 6 3.0614 4.3313 1.6627 9 1 2.5439 4.3887 2.6089 10 6 4.0721 5.2372 1.3678 11 7 4.9512 4.9590 0.4319 12 14 4.1817 6.8511 2.3021 13 1 3.4759 7.9128 1.5405 14 1 3.5485 6.6947 3.6362 15 1 5.6078 7.2287 2.4723 16 6 2.2868 2.1388 1.0787 17 8 2.1511 1.7556 2.2240 18 1 -0.3633 0.5139 0.8899 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0276 -0.0005 21 1 1.8933 -0.5139 -0.8900 22 1 1.8933 -0.5139 0.8900 23 1 3.1032 1.7593 -1.7799 24 1 1.4138 2.3556 -1.7813 25 1 5.6573 5.5915 0.2262 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261085056.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:35 Heat of formation + Delta-G solvation = -59.026621 kcal Electronic energy + Delta-G solvation = -12925.952135 eV Core-core repulsion = 10518.951053 eV Total energy + Delta-G solvation = -2407.001082 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.78065 -39.02620 -36.99848 -36.27672 -34.31615 -31.89563 -28.27075 -27.33593 -24.37246 -22.95311 -21.30560 -19.44810 -17.89553 -17.53361 -17.19702 -16.38776 -16.03968 -15.65469 -14.80010 -14.78235 -14.49956 -14.36899 -13.63290 -13.22617 -12.95821 -12.85714 -12.79525 -12.18062 -11.99606 -11.52994 -11.28314 -10.69417 -10.12303 -9.71875 -8.51894 -6.34969 1.15765 1.35909 1.41430 1.51646 1.72953 2.27713 2.46269 2.83770 3.10486 3.61669 4.02455 4.30831 4.42746 4.51041 4.58044 4.76984 4.95124 5.24063 5.35024 5.40354 5.75025 5.96352 6.25941 6.71230 7.13335 7.23726 7.83188 8.58962 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.058510 B = 0.012331 C = 0.010882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.439210 B = 2270.077631 C = 2572.500582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.141 3.859 3 N -0.627 5.627 4 C 0.082 3.918 5 C 0.471 3.529 6 O -0.509 6.509 7 N -0.435 5.435 8 C -0.386 4.386 9 H 0.087 0.913 10 C 0.012 3.988 11 N -0.863 5.863 12 Si 1.001 2.999 13 H -0.271 1.271 14 H -0.259 1.259 15 H -0.269 1.269 16 C 0.665 3.335 17 O -0.611 6.611 18 H 0.028 0.972 19 H 0.068 0.932 20 H 0.097 0.903 21 H 0.123 0.877 22 H 0.069 0.931 23 H 0.134 0.866 24 H 0.143 0.857 25 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.807 -7.465 -5.154 10.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 N -0.367 5.367 4 C -0.044 4.044 5 C 0.261 3.739 6 O -0.383 6.383 7 N -0.167 5.167 8 C -0.512 4.512 9 H 0.105 0.895 10 C -0.196 4.196 11 N -0.496 5.496 12 Si 0.822 3.178 13 H -0.196 1.196 14 H -0.183 1.183 15 H -0.194 1.194 16 C 0.369 3.631 17 O -0.493 6.493 18 H 0.047 0.953 19 H 0.087 0.913 20 H 0.116 0.884 21 H 0.141 0.859 22 H 0.088 0.912 23 H 0.151 0.849 24 H 0.160 0.840 25 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.546 -7.179 -4.954 10.337 hybrid contribution 0.345 0.809 0.593 1.061 sum -5.201 -6.370 -4.361 9.309 Atomic orbital electron populations 1.22169 0.94822 1.03627 1.01634 1.21549 0.94946 0.76953 1.04439 1.47856 1.69443 1.14789 1.04655 1.22484 1.04902 0.87424 0.89556 1.21334 0.79355 0.90600 0.82635 1.90563 1.46010 1.35081 1.66616 1.42211 1.54527 1.11240 1.08716 1.19518 1.20926 1.09522 1.01232 0.89479 1.26337 0.92475 1.03157 0.97604 1.69990 1.12299 1.36261 1.31047 0.84850 0.78129 0.76445 0.78402 1.19599 1.18266 1.19407 1.16652 0.79523 0.81444 0.85478 1.90720 1.61482 1.75908 1.21150 0.95264 0.91272 0.88447 0.85939 0.91240 0.84881 0.83952 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.54 10.24 71.98 0.74 -2.80 15 2 C 0.14 3.54 6.87 86.38 0.59 4.13 15 3 N -0.63 -22.79 3.02 -841.89 -2.54 -25.33 15 4 C 0.08 2.73 7.66 85.76 0.66 3.39 15 5 C 0.47 23.56 7.58 87.94 0.67 24.23 15 6 O -0.51 -28.75 15.42 -2.87 -0.04 -28.80 15 7 N -0.43 -24.12 2.69 -598.61 -1.61 -25.73 15 8 C -0.39 -23.19 9.46 83.96 0.79 -22.39 15 9 H 0.09 5.29 7.90 -2.91 -0.02 5.27 15 10 C 0.01 0.68 4.82 84.92 0.41 1.09 15 11 N -0.86 -51.60 11.20 21.65 0.24 -51.35 15 12 Si 1.00 44.99 29.60 68.60 2.03 47.02 15 13 H -0.27 -11.92 7.11 99.48 0.71 -11.21 15 14 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 15 H -0.27 -11.43 7.11 99.48 0.71 -10.72 15 16 C 0.66 33.48 8.26 179.44 1.48 34.96 15 17 O -0.61 -34.53 17.29 -3.80 -0.07 -34.60 15 18 H 0.03 0.81 8.14 -2.39 -0.02 0.79 15 19 H 0.07 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.10 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.12 2.01 8.14 -2.39 -0.02 1.99 15 22 H 0.07 1.94 8.03 -2.39 -0.02 1.92 15 23 H 0.13 3.65 8.14 -2.39 -0.02 3.63 15 24 H 0.14 3.57 8.14 -2.38 -0.02 3.56 15 25 H 0.27 15.39 8.31 -92.71 -0.77 14.62 15 Total: -1.00 -78.57 228.50 4.54 -74.03 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 1.19 Total: 2.15 kcal Atomic # 6 Polarization: 37.27 SS G_CDS: 5.34 Total: 42.60 kcal Atomic # 7 Polarization: -98.50 SS G_CDS: -3.91 Total: -102.41 kcal Atomic # 8 Polarization: -63.28 SS G_CDS: -0.11 Total: -63.39 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -78.57 4.54 -74.03 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261085056.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.002 kcal (2) G-P(sol) polarization free energy of solvation -78.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds