Wall clock time and date at job start Mon Mar 30 2020 02:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34126 * 125.99169 * 2 1 4 4 C 1.30498 * 109.25865 * 180.11678 * 3 2 1 5 5 C 1.50706 * 125.65165 * 179.89167 * 4 3 2 6 6 C 1.50698 * 109.47294 * 304.69796 * 5 4 3 7 7 H 1.08005 * 119.99819 * 359.97438 * 6 5 4 8 8 C 1.37875 * 120.00046 * 180.02562 * 6 5 4 9 9 N 1.31518 * 119.99944 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99979 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47418 * 89.99710 * 10 8 6 12 12 H 1.48498 * 109.47091 * 209.99770 * 10 8 6 13 13 H 1.48498 * 109.46997 * 329.99580 * 10 8 6 14 14 N 1.35038 * 108.70009 * 359.63033 * 4 3 2 15 15 H 0.97001 * 126.40070 * 180.20450 * 14 4 3 16 16 C 1.34664 * 125.99052 * 179.70570 * 2 1 3 17 17 C 1.50698 * 126.59173 * 0.06821 * 16 2 1 18 18 F 1.39895 * 109.47775 * 89.98207 * 17 16 2 19 19 H 1.08998 * 109.47030 * 270.29850 * 1 2 3 20 20 H 1.09004 * 109.47460 * 30.29564 * 1 2 3 21 21 H 1.08998 * 109.47170 * 150.29554 * 1 2 3 22 22 H 1.09001 * 109.46953 * 64.69238 * 5 4 3 23 23 H 1.09000 * 109.47318 * 184.68836 * 5 4 3 24 24 H 0.96997 * 119.99752 * 180.02562 * 9 8 6 25 25 H 1.09006 * 109.47361 * 209.98855 * 17 16 2 26 26 H 1.09005 * 109.46958 * 329.97829 * 17 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2951 1.0852 0.0000 4 6 3.5449 0.7095 -0.0025 5 6 4.7386 1.6293 -0.0057 6 6 4.6404 2.5759 -1.1742 7 1 3.7979 2.5170 -1.8475 8 6 5.6264 3.5164 -1.3843 9 7 6.6525 3.5877 -0.5647 10 14 5.5050 4.6892 -2.8331 11 1 4.7721 5.9128 -2.4195 12 1 6.8699 5.0592 -3.2863 13 1 4.7763 4.0281 -3.9454 14 7 3.5912 -0.6401 0.0040 15 1 4.3913 -1.1885 0.0068 16 6 2.2983 -1.0896 0.0056 17 6 1.8472 -2.5274 0.0115 18 9 1.7084 -2.9782 -1.3055 19 1 -0.3633 0.0054 1.0276 20 1 -0.3634 0.8873 -0.5184 21 1 -0.3633 -0.8926 -0.5092 22 1 4.7603 2.1997 0.9230 23 1 5.6514 1.0398 -0.0913 24 1 7.3460 4.2496 -0.7124 25 1 2.5872 -3.1383 0.5286 26 1 0.8889 -2.6055 0.5252 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261131775.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:22 Heat of formation + Delta-G solvation = -14.696253 kcal Electronic energy + Delta-G solvation = -12120.024573 eV Core-core repulsion = 9727.318590 eV Total energy + Delta-G solvation = -2392.705984 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -47.53689 -41.41907 -33.54253 -32.57016 -31.67211 -28.81066 -27.79487 -24.54737 -22.68496 -20.16038 -19.27755 -16.98660 -16.36341 -15.93020 -15.55084 -14.75327 -14.48835 -14.26675 -13.09392 -12.61789 -12.48378 -12.08300 -11.76400 -11.72040 -11.34311 -11.19034 -10.75035 -10.72773 -9.92814 -9.45174 -9.19056 -9.15911 -8.47702 -7.58937 -6.08487 -4.09877 2.47934 3.33544 3.38813 3.43761 3.64079 3.81085 4.46026 4.79822 4.86615 4.97604 5.19814 5.29572 5.61901 5.69130 5.94590 5.99561 6.22321 6.34470 6.70723 7.14934 7.36125 7.43312 7.90002 7.96908 8.25972 8.88784 8.94970 9.53706 11.02497 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.051651 B = 0.008273 C = 0.008026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.974121 B = 3383.488285 C = 3488.007450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.030 3.970 3 N -0.493 5.493 4 C 0.281 3.719 5 C 0.093 3.907 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.057 3.943 9 N -0.898 5.898 10 Si 0.902 3.098 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.273 1.273 14 N -0.568 5.568 15 H 0.413 0.587 16 C -0.123 4.123 17 C 0.152 3.848 18 F -0.215 7.215 19 H 0.064 0.936 20 H 0.071 0.929 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.034 0.966 24 H 0.263 0.737 25 H 0.074 0.926 26 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 -10.584 2.350 13.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.102 4.102 3 N -0.213 5.213 4 C 0.017 3.983 5 C 0.054 3.946 6 C -0.542 4.542 7 H 0.082 0.918 8 C -0.144 4.144 9 N -0.538 5.538 10 Si 0.730 3.270 11 H -0.204 1.204 12 H -0.212 1.212 13 H -0.198 1.198 14 N -0.170 5.170 15 H 0.250 0.750 16 C -0.237 4.237 17 C 0.096 3.904 18 F -0.196 7.196 19 H 0.083 0.917 20 H 0.090 0.910 21 H 0.081 0.919 22 H 0.069 0.931 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.524 -9.687 2.354 12.490 hybrid contribution 0.788 -0.458 -0.808 1.218 sum -6.736 -10.146 1.546 12.276 Atomic orbital electron populations 1.20030 0.88420 1.02401 1.01681 1.20630 0.96203 0.88551 1.04767 1.70328 1.00228 1.28862 1.21857 1.24664 0.96444 0.80530 0.96668 1.17922 0.85515 0.91433 0.99710 1.20968 1.07303 1.15709 1.10241 0.91782 1.24977 0.95107 0.97420 0.96890 1.69942 1.10795 1.35675 1.37366 0.86415 0.77119 0.81108 0.82364 1.20410 1.21247 1.19820 1.43294 1.07172 1.08780 1.57784 0.74987 1.20955 0.85427 0.96288 1.20990 1.19976 1.02360 0.88613 0.79404 1.92812 1.97395 1.89978 1.39400 0.91678 0.91040 0.91914 0.93119 0.94757 0.92744 0.90736 0.88896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.05 36.00 0.36 -0.63 15 2 C 0.03 0.58 7.09 -82.86 -0.59 0.00 15 3 N -0.49 -11.62 11.21 -7.07 -0.08 -11.70 15 4 C 0.28 6.46 7.37 -155.42 -1.15 5.32 15 5 C 0.09 2.38 5.60 -29.03 -0.16 2.22 15 6 C -0.50 -14.35 9.06 -34.44 -0.31 -14.66 15 7 H 0.06 1.88 7.74 -52.48 -0.41 1.48 15 8 C 0.06 1.62 5.46 -17.82 -0.10 1.53 15 9 N -0.90 -26.19 13.29 55.43 0.74 -25.45 15 10 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 15 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 15 12 H -0.29 -6.81 7.11 56.52 0.40 -6.41 15 13 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 14 N -0.57 -10.55 6.15 -6.54 -0.04 -10.59 15 15 H 0.41 6.30 8.96 -40.82 -0.37 5.94 15 16 C -0.12 -2.12 6.96 -81.60 -0.57 -2.69 15 17 C 0.15 1.91 7.71 36.00 0.28 2.18 15 18 F -0.21 -3.20 17.34 2.25 0.04 -3.16 15 19 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 20 H 0.07 1.07 8.14 -51.93 -0.42 0.65 15 21 H 0.06 0.77 7.79 -51.93 -0.40 0.37 15 22 H 0.05 1.37 8.14 -51.93 -0.42 0.95 15 23 H 0.03 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.26 7.24 8.31 -40.82 -0.34 6.90 15 25 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 26 H 0.09 0.91 7.80 -51.93 -0.41 0.50 15 LS Contribution 239.46 15.07 3.61 3.61 Total: -1.00 -32.28 239.46 -5.82 -38.10 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -2.83 Total: -0.97 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -2.23 Total: -6.74 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.62 Total: -47.74 kcal Atomic # 9 Polarization: -3.20 SS G_CDS: 0.04 Total: -3.16 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.61 Total: 3.61 kcal Total: -32.28 -5.82 -38.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261131775.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.406 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds