Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47151 * 2 1 4 4 F 1.39891 * 109.47363 * 120.00152 * 2 1 3 5 5 C 1.50706 * 109.47357 * 240.00296 * 2 1 3 6 6 N 1.31015 * 125.17340 * 4.69130 * 5 2 1 7 7 C 1.33024 * 109.97649 * 179.82582 * 6 5 2 8 8 C 1.39618 * 107.46203 * 0.43492 * 7 6 5 9 9 C 1.40067 * 127.05942 * 179.72096 * 8 7 6 10 10 H 1.07995 * 120.00073 * 187.38077 * 9 8 7 11 11 C 1.40074 * 119.99548 * 7.38236 * 9 8 7 12 12 N 1.30844 * 120.00586 * 10.60342 * 11 9 8 13 13 Si 1.86800 * 119.99461 * 190.60226 * 11 9 8 14 14 H 1.48499 * 109.47516 * 93.90345 * 13 11 9 15 15 H 1.48508 * 109.47016 * 213.89970 * 13 11 9 16 16 H 1.48502 * 109.47524 * 333.89839 * 13 11 9 17 17 N 1.35072 * 125.17975 * 185.00154 * 5 2 1 18 18 H 0.97005 * 126.48353 * 359.97438 * 17 5 2 19 19 H 1.09004 * 109.46869 * 60.00222 * 1 2 3 20 20 H 1.08992 * 109.47291 * 299.99941 * 1 2 3 21 21 H 1.09000 * 109.46746 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.46975 * 59.99865 * 3 2 1 23 23 H 1.08997 * 109.47182 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47053 * 299.99666 * 3 2 1 25 25 H 1.08004 * 126.26332 * 180.17442 * 7 6 5 26 26 H 0.96999 * 120.00699 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0324 -0.7104 -1.2305 6 7 1.2777 -1.1681 -2.1987 7 6 2.0336 -1.7367 -3.1341 8 6 3.3623 -1.6364 -2.7171 9 6 4.4964 -2.1066 -3.3914 10 1 5.4626 -2.0746 -2.9102 11 6 4.3771 -2.6182 -4.6899 12 7 3.2580 -2.4698 -5.3514 13 14 5.8159 -3.5125 -5.4771 14 1 5.6780 -4.9727 -5.2451 15 1 5.8275 -3.2423 -6.9373 16 1 7.0859 -3.0333 -4.8749 17 7 3.3287 -0.9772 -1.5003 18 1 4.0918 -0.7497 -0.9463 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6766 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6832 -2.1958 -4.0467 26 1 3.1753 -2.8244 -6.2505 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261140012.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = -19.106400 kcal Electronic energy + Delta-G solvation = -12488.532428 eV Core-core repulsion = 10095.635206 eV Total energy + Delta-G solvation = -2392.897222 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.12180 -39.87046 -34.06811 -33.11756 -30.97328 -28.27733 -26.98255 -24.80644 -21.55061 -19.96850 -18.91673 -17.57585 -16.04521 -15.17729 -15.02090 -14.60451 -13.89501 -13.06517 -12.80961 -12.46161 -12.13333 -11.92094 -11.71030 -11.57679 -11.46284 -11.31440 -10.76220 -10.58126 -10.36980 -10.14351 -9.37459 -8.42903 -8.32473 -7.01906 -6.72841 -4.30292 2.93007 3.07117 3.10344 3.60558 3.89760 4.56487 4.58563 5.04783 5.12225 5.32926 5.50187 5.51247 5.88595 6.01861 6.15899 6.31069 6.62532 6.69683 6.99707 7.08932 7.57956 7.62672 7.92093 8.44609 8.80758 8.88805 9.16356 9.85621 10.26084 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.073933 B = 0.009160 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.629006 B = 3056.182750 C = 3239.647497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.219 3.781 3 C -0.163 4.163 4 F -0.218 7.218 5 C 0.034 3.966 6 N -0.459 5.459 7 C -0.127 4.127 8 C 0.191 3.809 9 C -0.452 4.452 10 H 0.073 0.927 11 C 0.077 3.923 12 N -0.796 5.796 13 Si 0.924 3.076 14 H -0.269 1.269 15 H -0.277 1.277 16 H -0.265 1.265 17 N -0.599 5.599 18 H 0.396 0.604 19 H 0.078 0.922 20 H 0.055 0.945 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.059 0.941 24 H 0.076 0.924 25 H 0.178 0.822 26 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.129 3.580 4.882 6.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.199 3.801 3 C -0.221 4.221 4 F -0.199 7.199 5 C -0.218 4.218 6 N -0.179 5.179 7 C -0.278 4.278 8 C 0.077 3.923 9 C -0.487 4.487 10 H 0.091 0.909 11 C -0.141 4.141 12 N -0.423 5.423 13 Si 0.749 3.251 14 H -0.194 1.194 15 H -0.202 1.202 16 H -0.189 1.189 17 N -0.209 5.209 18 H 0.230 0.770 19 H 0.097 0.903 20 H 0.074 0.926 21 H 0.088 0.912 22 H 0.082 0.918 23 H 0.078 0.922 24 H 0.095 0.905 25 H 0.195 0.805 26 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.956 3.596 4.671 5.971 hybrid contribution 2.049 -0.453 -0.101 2.101 sum 1.093 3.143 4.569 5.653 Atomic orbital electron populations 1.22022 0.92506 1.03734 1.02123 1.18645 0.94536 0.89471 0.77464 1.22330 1.01851 0.95070 1.02859 1.92818 1.90630 1.83449 1.53021 1.21798 0.81758 1.17199 1.01054 1.69313 1.34917 1.11905 1.01782 1.23086 0.88331 1.14270 1.02096 1.19095 0.96723 0.93202 0.83258 1.18389 0.93472 1.37960 0.98900 0.90919 1.25673 0.97292 0.94737 0.96417 1.69702 1.25842 1.35407 1.11366 0.86045 0.80851 0.79943 0.78246 1.19450 1.20187 1.18896 1.42740 1.07363 1.50304 1.20517 0.76963 0.90267 0.92617 0.91247 0.91831 0.92218 0.90539 0.80501 0.90882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 8.38 37.16 0.31 -2.18 15 2 C 0.22 4.21 1.67 -91.77 -0.15 4.05 15 3 C -0.16 -2.57 8.91 37.16 0.33 -2.24 15 4 F -0.22 -4.34 16.79 2.25 0.04 -4.30 15 5 C 0.03 0.82 6.79 -154.96 -1.05 -0.23 15 6 N -0.46 -12.23 10.41 -9.76 -0.10 -12.33 15 7 C -0.13 -3.61 10.85 -16.52 -0.18 -3.79 15 8 C 0.19 5.23 6.93 -83.68 -0.58 4.65 15 9 C -0.45 -11.98 9.44 -38.21 -0.36 -12.34 15 10 H 0.07 1.81 7.87 -52.49 -0.41 1.40 15 11 C 0.08 1.93 5.45 -17.28 -0.09 1.83 15 12 N -0.80 -20.72 10.60 55.56 0.59 -20.13 15 13 Si 0.92 18.70 29.57 -169.99 -5.03 13.67 15 14 H -0.27 -5.41 7.11 56.52 0.40 -5.00 15 15 H -0.28 -5.46 7.11 56.52 0.40 -5.06 15 16 H -0.26 -5.27 7.11 56.52 0.40 -4.86 15 17 N -0.60 -14.50 6.23 -7.86 -0.05 -14.55 15 18 H 0.40 8.37 8.96 -40.82 -0.37 8.00 15 19 H 0.08 1.35 8.13 -51.93 -0.42 0.93 15 20 H 0.05 0.77 8.14 -51.93 -0.42 0.34 15 21 H 0.07 1.26 8.14 -51.93 -0.42 0.84 15 22 H 0.06 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.06 0.92 8.14 -51.93 -0.42 0.50 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.18 5.17 6.06 -52.48 -0.32 4.85 15 26 H 0.28 6.59 8.30 -40.82 -0.34 6.26 15 LS Contribution 233.37 15.07 3.52 3.52 Total: -1.00 -29.40 233.37 -5.58 -34.98 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -2.77 Total: 9.38 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: -1.78 Total: -10.24 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.44 Total: -47.01 kcal Atomic # 9 Polarization: -4.34 SS G_CDS: 0.04 Total: -4.30 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -29.40 -5.58 -34.98 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140012.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.876 kcal (2) G-P(sol) polarization free energy of solvation -29.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds