Wall clock time and date at job start Mon Mar 30 2020 02:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47151 * 2 1 4 4 F 1.39891 * 109.47363 * 120.00152 * 2 1 3 5 5 C 1.50706 * 109.47357 * 240.00296 * 2 1 3 6 6 N 1.31015 * 125.17340 * 4.69130 * 5 2 1 7 7 C 1.33024 * 109.97649 * 179.82582 * 6 5 2 8 8 C 1.39618 * 107.46203 * 0.43492 * 7 6 5 9 9 C 1.40067 * 127.05942 * 179.72096 * 8 7 6 10 10 H 1.07995 * 120.00073 * 187.38077 * 9 8 7 11 11 C 1.40074 * 119.99548 * 7.38236 * 9 8 7 12 12 N 1.30844 * 120.00586 * 10.60342 * 11 9 8 13 13 Si 1.86800 * 119.99461 * 190.60226 * 11 9 8 14 14 H 1.48499 * 109.47516 * 93.90345 * 13 11 9 15 15 H 1.48508 * 109.47016 * 213.89970 * 13 11 9 16 16 H 1.48502 * 109.47524 * 333.89839 * 13 11 9 17 17 N 1.35072 * 125.17975 * 185.00154 * 5 2 1 18 18 H 0.97005 * 126.48353 * 359.97438 * 17 5 2 19 19 H 1.09004 * 109.46869 * 60.00222 * 1 2 3 20 20 H 1.08992 * 109.47291 * 299.99941 * 1 2 3 21 21 H 1.09000 * 109.46746 * 179.97438 * 1 2 3 22 22 H 1.08992 * 109.46975 * 59.99865 * 3 2 1 23 23 H 1.08997 * 109.47182 * 180.02562 * 3 2 1 24 24 H 1.09004 * 109.47053 * 299.99666 * 3 2 1 25 25 H 1.08004 * 126.26332 * 180.17442 * 7 6 5 26 26 H 0.96999 * 120.00699 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 9 1.9963 -0.6595 1.1422 5 6 2.0324 -0.7104 -1.2305 6 7 1.2777 -1.1681 -2.1987 7 6 2.0336 -1.7367 -3.1341 8 6 3.3623 -1.6364 -2.7171 9 6 4.4964 -2.1066 -3.3914 10 1 5.4626 -2.0746 -2.9102 11 6 4.3771 -2.6182 -4.6899 12 7 3.2580 -2.4698 -5.3514 13 14 5.8159 -3.5125 -5.4771 14 1 5.6780 -4.9727 -5.2451 15 1 5.8275 -3.2423 -6.9373 16 1 7.0859 -3.0333 -4.8749 17 7 3.3287 -0.9772 -1.5003 18 1 4.0918 -0.7497 -0.9463 19 1 -0.3633 0.5138 -0.8901 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 -1.0277 -0.0005 22 1 1.6766 1.9563 0.8899 23 1 3.1300 1.4425 -0.0005 24 1 1.6767 1.9563 -0.8901 25 1 1.6832 -2.1958 -4.0467 26 1 3.1753 -2.8244 -6.2505 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261140012.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:12:19 Heat of formation + Delta-G solvation = -37.813006 kcal Electronic energy + Delta-G solvation = -12489.343607 eV Core-core repulsion = 10095.635206 eV Total energy + Delta-G solvation = -2393.708401 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.68959 -41.85008 -35.86474 -34.74769 -32.97204 -30.23769 -28.30486 -26.70994 -23.26345 -21.98106 -20.80928 -19.39455 -17.94227 -16.90242 -16.57045 -16.13138 -15.62773 -14.94677 -14.63714 -14.07729 -13.89717 -13.29877 -13.19716 -13.11752 -12.99568 -12.92884 -12.66750 -12.13115 -11.86551 -11.79079 -11.23263 -10.43840 -10.36504 -9.06080 -8.62331 -6.33762 1.25580 1.41639 1.56653 1.78260 2.19525 2.59566 2.75867 3.30689 3.52573 3.65199 3.95878 4.05947 4.68346 4.71676 4.81830 4.99966 5.05058 5.11901 5.24510 5.34320 5.58680 5.61310 5.89584 6.45411 6.75766 6.85701 7.26740 7.82993 8.38964 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.073933 B = 0.009160 C = 0.008641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 378.629006 B = 3056.182750 C = 3239.647497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.212 3.788 3 C -0.156 4.156 4 F -0.220 7.220 5 C 0.052 3.948 6 N -0.483 5.483 7 C -0.171 4.171 8 C 0.169 3.831 9 C -0.481 4.481 10 H 0.082 0.918 11 C 0.032 3.968 12 N -0.827 5.827 13 Si 1.005 2.995 14 H -0.265 1.265 15 H -0.267 1.267 16 H -0.256 1.256 17 N -0.596 5.596 18 H 0.410 0.590 19 H 0.075 0.925 20 H 0.096 0.904 21 H 0.050 0.950 22 H 0.101 0.899 23 H 0.060 0.940 24 H 0.075 0.925 25 H 0.159 0.841 26 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.059 4.209 5.761 7.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.192 3.808 3 C -0.214 4.214 4 F -0.201 7.201 5 C -0.204 4.204 6 N -0.203 5.203 7 C -0.319 4.319 8 C 0.055 3.945 9 C -0.516 4.516 10 H 0.100 0.900 11 C -0.183 4.183 12 N -0.454 5.454 13 Si 0.825 3.175 14 H -0.190 1.190 15 H -0.191 1.191 16 H -0.180 1.180 17 N -0.208 5.208 18 H 0.247 0.753 19 H 0.094 0.906 20 H 0.115 0.885 21 H 0.069 0.931 22 H 0.119 0.881 23 H 0.079 0.921 24 H 0.094 0.906 25 H 0.176 0.824 26 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.027 4.227 5.545 6.972 hybrid contribution 1.691 -0.603 -0.296 1.820 sum 1.664 3.624 5.249 6.592 Atomic orbital electron populations 1.22025 0.90801 1.03168 1.04011 1.19047 0.95919 0.90656 0.75197 1.22296 1.01963 0.92452 1.04727 1.92813 1.90780 1.83796 1.52693 1.22918 0.81455 1.14511 1.01540 1.69273 1.35459 1.13053 1.02529 1.22914 0.89445 1.16802 1.02784 1.19352 0.96739 0.93963 0.84446 1.18785 0.93637 1.39195 0.99992 0.89961 1.26755 1.00321 0.94788 0.96440 1.69793 1.27938 1.35681 1.12034 0.84854 0.76991 0.78274 0.77404 1.18984 1.19135 1.17958 1.42757 1.08177 1.49886 1.19975 0.75313 0.90563 0.88530 0.93101 0.88059 0.92124 0.90599 0.82425 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 8.38 71.98 0.60 -3.93 15 2 C 0.21 7.69 1.67 -11.54 -0.02 7.67 15 3 C -0.16 -4.43 8.91 71.98 0.64 -3.79 15 4 F -0.22 -8.22 16.79 44.97 0.76 -7.46 15 5 C 0.05 2.45 6.79 137.97 0.94 3.38 15 6 N -0.48 -26.24 10.41 -184.79 -1.92 -28.16 15 7 C -0.17 -10.09 10.85 84.85 0.92 -9.17 15 8 C 0.17 9.46 6.93 38.88 0.27 9.73 15 9 C -0.48 -25.79 9.44 23.16 0.22 -25.57 15 10 H 0.08 4.09 7.87 -2.91 -0.02 4.07 15 11 C 0.03 1.61 5.45 85.29 0.46 2.08 15 12 N -0.83 -44.01 10.60 21.86 0.23 -43.78 15 13 Si 1.00 37.83 29.57 68.60 2.03 39.86 15 14 H -0.26 -9.74 7.11 99.48 0.71 -9.04 15 15 H -0.27 -9.54 7.11 99.48 0.71 -8.84 15 16 H -0.26 -9.20 7.11 99.48 0.71 -8.49 15 17 N -0.60 -28.84 6.23 -178.77 -1.11 -29.95 15 18 H 0.41 17.03 8.96 -92.70 -0.83 16.20 15 19 H 0.08 2.47 8.13 -2.38 -0.02 2.45 15 20 H 0.10 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.05 1.79 8.14 -2.39 -0.02 1.77 15 22 H 0.10 2.14 8.14 -2.39 -0.02 2.13 15 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 15 24 H 0.07 2.17 8.14 -2.38 -0.02 2.15 15 25 H 0.16 9.74 6.06 -2.91 -0.02 9.72 15 26 H 0.29 13.79 8.30 -92.71 -0.77 13.02 15 Total: -1.00 -64.37 233.37 4.38 -59.99 By element: Atomic # 1 Polarization: 28.75 SS G_CDS: 0.36 Total: 29.11 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 4.04 Total: -19.60 kcal Atomic # 7 Polarization: -99.09 SS G_CDS: -2.81 Total: -101.90 kcal Atomic # 9 Polarization: -8.22 SS G_CDS: 0.76 Total: -7.46 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -64.37 4.38 -59.99 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261140012.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.180 kcal (2) G-P(sol) polarization free energy of solvation -64.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds