Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47515 * 2 1 4 4 F 1.39902 * 109.46976 * 240.00337 * 2 1 3 5 5 C 1.50699 * 109.47080 * 120.00536 * 2 1 3 6 6 C 1.36212 * 126.40493 * 84.97104 * 5 2 1 7 7 N 1.32755 * 108.62278 * 180.02562 * 6 5 2 8 8 C 1.32984 * 109.22542 * 359.97438 * 7 6 5 9 9 C 1.39997 * 125.96745 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00247 * 174.06362 * 9 8 7 11 11 C 1.40240 * 119.99885 * 354.06695 * 9 8 7 12 12 N 1.30697 * 119.99515 * 5.99646 * 11 9 8 13 13 Si 1.86794 * 119.99873 * 185.99864 * 11 9 8 14 14 H 1.48499 * 109.47195 * 94.98660 * 13 11 9 15 15 H 1.48504 * 109.47078 * 214.97964 * 13 11 9 16 16 H 1.48492 * 109.47549 * 334.97987 * 13 11 9 17 17 N 1.36418 * 126.40467 * 264.99994 * 5 2 1 18 18 C 1.46504 * 126.55237 * 0.02562 * 17 5 2 19 19 H 1.09002 * 109.46730 * 300.00205 * 1 2 3 20 20 H 1.08998 * 109.46810 * 59.99059 * 1 2 3 21 21 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 22 22 H 1.08000 * 125.68875 * 0.02562 * 6 5 2 23 23 H 0.97008 * 119.99293 * 180.02562 * 12 11 9 24 24 H 1.08996 * 109.47513 * 269.98289 * 18 17 5 25 25 H 1.08997 * 109.47114 * 29.98776 * 18 17 5 26 26 H 1.09004 * 109.47230 * 149.98679 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7105 1.2304 6 6 2.2112 -2.0534 1.3720 7 7 2.6656 -2.2938 2.5960 8 6 2.7868 -1.1433 3.2519 9 6 3.2369 -0.9911 4.5688 10 1 3.3891 -0.0027 4.9766 11 6 3.4902 -2.1221 5.3584 12 7 3.4196 -3.3160 4.8314 13 14 3.9283 -1.9220 7.1632 14 1 2.7013 -2.0582 7.9885 15 1 4.9064 -2.9688 7.5541 16 1 4.5256 -0.5802 7.3818 17 7 2.3924 -0.1291 2.4108 18 6 2.3639 1.3020 2.7229 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 2.0160 -2.7983 0.6148 23 1 3.5945 -4.0983 5.3777 24 1 3.3220 1.7504 2.4602 25 1 1.5692 1.7826 2.1524 26 1 2.1793 1.4379 3.7886 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261143515.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -2.071722 kcal Electronic energy + Delta-G solvation = -12529.920507 eV Core-core repulsion = 10137.761964 eV Total energy + Delta-G solvation = -2392.158543 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.02667 -39.92905 -33.56133 -32.50111 -31.79204 -28.25616 -25.97723 -24.92241 -22.34038 -20.02889 -18.64116 -16.81387 -15.91872 -15.26021 -14.98177 -14.66943 -13.91861 -13.78940 -12.73351 -12.51045 -12.30376 -11.91703 -11.76050 -11.61416 -11.39455 -11.16348 -10.71959 -10.55518 -10.32179 -10.10683 -9.21119 -7.97328 -7.82660 -7.05343 -6.44729 -4.32661 3.00989 3.13815 3.16820 3.49979 3.97548 4.32239 4.64369 5.19955 5.31612 5.51506 5.54662 5.63024 5.66306 6.00008 6.06905 6.11305 6.36781 6.44073 6.51079 7.11301 7.26217 7.58124 8.04511 8.18662 8.50502 8.91033 9.27025 10.17507 10.48522 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.064916 B = 0.010044 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.222637 B = 2787.037234 C = 3053.862338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.192 3.808 3 H 0.064 0.936 4 F -0.214 7.214 5 C -0.197 4.197 6 C 0.024 3.976 7 N -0.517 5.517 8 C 0.383 3.617 9 C -0.462 4.462 10 H 0.079 0.921 11 C 0.082 3.918 12 N -0.739 5.739 13 Si 0.913 3.087 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.264 1.264 17 N -0.505 5.505 18 C 0.097 3.903 19 H 0.066 0.934 20 H 0.055 0.945 21 H 0.067 0.933 22 H 0.136 0.864 23 H 0.273 0.727 24 H 0.048 0.952 25 H 0.057 0.943 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.143 6.808 -2.455 7.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.154 3.846 3 H 0.082 0.918 4 F -0.195 7.195 5 C -0.308 4.308 6 C -0.131 4.131 7 N -0.237 5.237 8 C 0.142 3.858 9 C -0.501 4.501 10 H 0.097 0.903 11 C -0.142 4.142 12 N -0.363 5.363 13 Si 0.737 3.263 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.188 1.188 17 N -0.196 5.196 18 C -0.047 4.047 19 H 0.085 0.915 20 H 0.074 0.926 21 H 0.086 0.914 22 H 0.153 0.847 23 H 0.084 0.916 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.939 5.918 -2.162 6.952 hybrid contribution 0.015 0.923 0.381 0.999 sum -2.924 6.841 -1.782 7.650 Atomic orbital electron populations 1.22334 0.94973 1.03364 1.01697 1.19087 0.93053 0.93273 0.79140 0.91821 1.92769 1.90542 1.83882 1.52306 1.20469 1.24997 0.94767 0.90555 1.21947 1.02921 0.91698 0.96533 1.71332 1.25608 1.23335 1.03412 1.20260 0.93779 0.80219 0.91546 1.18146 1.44233 0.94184 0.93524 0.90274 1.25731 0.93907 0.94570 1.00036 1.70029 1.31784 0.98392 1.36113 0.86252 0.78834 0.79011 0.82204 1.19668 1.20208 1.18827 1.45023 1.56745 1.05875 1.11962 1.21451 1.00466 0.81000 1.01810 0.91474 0.92565 0.91391 0.84687 0.91592 0.93310 0.92433 0.90667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 9.63 37.16 0.36 -2.21 15 2 C 0.19 3.57 4.12 -27.88 -0.11 3.45 15 3 H 0.06 1.07 7.62 -51.93 -0.40 0.67 15 4 F -0.21 -4.21 16.86 2.25 0.04 -4.18 15 5 C -0.20 -4.60 6.08 -81.28 -0.49 -5.10 15 6 C 0.02 0.64 11.53 -17.88 -0.21 0.43 15 7 N -0.52 -15.29 9.43 -12.73 -0.12 -15.41 15 8 C 0.38 10.77 7.43 -155.60 -1.16 9.62 15 9 C -0.46 -12.53 8.97 -38.17 -0.34 -12.87 15 10 H 0.08 1.97 7.26 -52.49 -0.38 1.59 15 11 C 0.08 2.15 5.49 -17.28 -0.09 2.06 15 12 N -0.74 -20.73 11.92 55.56 0.66 -20.07 15 13 Si 0.91 19.02 29.57 -169.99 -5.03 13.99 15 14 H -0.27 -5.57 7.11 56.52 0.40 -5.17 15 15 H -0.28 -5.68 7.11 56.52 0.40 -5.27 15 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 15 17 N -0.51 -12.12 3.21 -118.76 -0.38 -12.50 15 18 C 0.10 1.77 10.57 59.85 0.63 2.40 15 19 H 0.07 1.01 8.14 -51.93 -0.42 0.58 15 20 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.07 1.10 8.14 -51.93 -0.42 0.68 15 22 H 0.14 3.25 8.06 -52.49 -0.42 2.82 15 23 H 0.27 6.94 8.29 -40.82 -0.34 6.60 15 24 H 0.05 0.82 8.14 -51.93 -0.42 0.40 15 25 H 0.06 0.87 7.67 -51.93 -0.40 0.47 15 26 H 0.07 1.31 7.45 -51.93 -0.39 0.93 15 LS Contribution 235.03 15.07 3.54 3.54 Total: -1.00 -31.67 235.03 -5.51 -37.18 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: -2.81 Total: -0.34 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: -1.42 Total: -2.22 kcal Atomic # 7 Polarization: -48.14 SS G_CDS: 0.16 Total: -47.98 kcal Atomic # 9 Polarization: -4.21 SS G_CDS: 0.04 Total: -4.18 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.03 Total: 13.99 kcal Total LS contribution 3.54 Total: 3.54 kcal Total: -31.67 -5.51 -37.18 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143515.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.105 kcal (2) G-P(sol) polarization free energy of solvation -31.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds