Wall clock time and date at job start Mon Mar 30 2020 02:13:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.47515 * 2 1 4 4 F 1.39902 * 109.46976 * 240.00337 * 2 1 3 5 5 C 1.50699 * 109.47080 * 120.00536 * 2 1 3 6 6 C 1.36212 * 126.40493 * 84.97104 * 5 2 1 7 7 N 1.32755 * 108.62278 * 180.02562 * 6 5 2 8 8 C 1.32984 * 109.22542 * 359.97438 * 7 6 5 9 9 C 1.39997 * 125.96745 * 180.02562 * 8 7 6 10 10 H 1.07995 * 120.00247 * 174.06362 * 9 8 7 11 11 C 1.40240 * 119.99885 * 354.06695 * 9 8 7 12 12 N 1.30697 * 119.99515 * 5.99646 * 11 9 8 13 13 Si 1.86794 * 119.99873 * 185.99864 * 11 9 8 14 14 H 1.48499 * 109.47195 * 94.98660 * 13 11 9 15 15 H 1.48504 * 109.47078 * 214.97964 * 13 11 9 16 16 H 1.48492 * 109.47549 * 334.97987 * 13 11 9 17 17 N 1.36418 * 126.40467 * 264.99994 * 5 2 1 18 18 C 1.46504 * 126.55237 * 0.02562 * 17 5 2 19 19 H 1.09002 * 109.46730 * 300.00205 * 1 2 3 20 20 H 1.08998 * 109.46810 * 59.99059 * 1 2 3 21 21 H 1.08996 * 109.47065 * 179.97438 * 1 2 3 22 22 H 1.08000 * 125.68875 * 0.02562 * 6 5 2 23 23 H 0.97008 * 119.99293 * 180.02562 * 12 11 9 24 24 H 1.08996 * 109.47513 * 269.98289 * 18 17 5 25 25 H 1.08997 * 109.47114 * 29.98776 * 18 17 5 26 26 H 1.09004 * 109.47230 * 149.98679 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6594 -1.1423 5 6 2.0324 -0.7105 1.2304 6 6 2.2112 -2.0534 1.3720 7 7 2.6656 -2.2938 2.5960 8 6 2.7868 -1.1433 3.2519 9 6 3.2369 -0.9911 4.5688 10 1 3.3891 -0.0027 4.9766 11 6 3.4902 -2.1221 5.3584 12 7 3.4196 -3.3160 4.8314 13 14 3.9283 -1.9220 7.1632 14 1 2.7013 -2.0582 7.9885 15 1 4.9064 -2.9688 7.5541 16 1 4.5256 -0.5802 7.3818 17 7 2.3924 -0.1291 2.4108 18 6 2.3639 1.3020 2.7229 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5140 -0.8899 21 1 -0.3633 -1.0276 -0.0005 22 1 2.0160 -2.7983 0.6148 23 1 3.5945 -4.0983 5.3777 24 1 3.3220 1.7504 2.4602 25 1 1.5692 1.7826 2.1524 26 1 2.1793 1.4379 3.7886 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143515.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:21 Heat of formation + Delta-G solvation = -22.094581 kcal Electronic energy + Delta-G solvation = -12530.788763 eV Core-core repulsion = 10137.761964 eV Total energy + Delta-G solvation = -2393.026799 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.56921 -41.85594 -35.46299 -34.32178 -33.35068 -30.11265 -27.67701 -26.70048 -23.96105 -21.99985 -20.40902 -18.70208 -17.65182 -16.97126 -16.62199 -16.27410 -15.54712 -15.48539 -14.56038 -14.20599 -13.66991 -13.43058 -13.34689 -13.23832 -12.99089 -12.81977 -12.40111 -12.22262 -11.93788 -11.77217 -11.09330 -9.89782 -9.83326 -9.02925 -8.37016 -6.33741 1.31441 1.44072 1.59733 1.69758 2.24216 2.57237 2.68040 3.57403 3.79418 3.85943 4.05720 4.21382 4.25760 4.54982 4.57106 4.74451 4.79052 4.96609 5.17800 5.19989 5.37454 5.66740 6.12825 6.24273 6.58353 6.94837 7.33222 8.20154 8.59715 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.064916 B = 0.010044 C = 0.009167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.222637 B = 2787.037234 C = 3053.862338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.189 3.811 3 H 0.096 0.904 4 F -0.220 7.220 5 C -0.166 4.166 6 C -0.031 4.031 7 N -0.564 5.564 8 C 0.345 3.655 9 C -0.490 4.490 10 H 0.095 0.905 11 C 0.030 3.970 12 N -0.793 5.793 13 Si 0.998 3.002 14 H -0.265 1.265 15 H -0.274 1.274 16 H -0.250 1.250 17 N -0.505 5.505 18 C 0.087 3.913 19 H 0.075 0.925 20 H 0.092 0.908 21 H 0.053 0.947 22 H 0.139 0.861 23 H 0.277 0.723 24 H 0.065 0.935 25 H 0.095 0.905 26 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.658 9.230 -2.275 10.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.152 3.848 3 H 0.114 0.886 4 F -0.201 7.201 5 C -0.279 4.279 6 C -0.184 4.184 7 N -0.286 5.286 8 C 0.101 3.899 9 C -0.529 4.529 10 H 0.113 0.887 11 C -0.189 4.189 12 N -0.418 5.418 13 Si 0.818 3.182 14 H -0.190 1.190 15 H -0.199 1.199 16 H -0.173 1.173 17 N -0.195 5.195 18 C -0.056 4.056 19 H 0.094 0.906 20 H 0.111 0.889 21 H 0.072 0.928 22 H 0.157 0.843 23 H 0.087 0.913 24 H 0.084 0.916 25 H 0.113 0.887 26 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.466 8.381 -2.014 9.290 hybrid contribution 0.131 0.250 0.160 0.324 sum -3.335 8.630 -1.855 9.437 Atomic orbital electron populations 1.22266 0.92110 1.03275 1.03923 1.19442 0.95121 0.93751 0.76512 0.88601 1.92763 1.90837 1.84229 1.52320 1.21240 1.20732 0.94250 0.91640 1.22213 1.06044 0.93707 0.96392 1.71174 1.26919 1.25475 1.04999 1.20609 0.95487 0.81126 0.92657 1.18607 1.45173 0.95334 0.93830 0.88739 1.26856 0.93058 0.93764 1.05235 1.70181 1.33697 0.99563 1.38406 0.84973 0.78621 0.79471 0.75132 1.18973 1.19865 1.17306 1.45343 1.55065 1.07746 1.11315 1.21844 1.02850 0.77800 1.03056 0.90635 0.88930 0.92751 0.84321 0.91304 0.91634 0.88662 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.33 9.63 71.98 0.69 -3.64 15 2 C 0.19 6.44 4.12 29.85 0.12 6.57 15 3 H 0.10 2.73 7.62 -2.39 -0.02 2.71 15 4 F -0.22 -8.20 16.86 44.97 0.76 -7.44 15 5 C -0.17 -7.58 6.08 41.37 0.25 -7.33 15 6 C -0.03 -1.65 11.53 84.08 0.97 -0.68 15 7 N -0.56 -34.70 9.43 -194.18 -1.83 -36.54 15 8 C 0.35 19.74 7.43 133.59 0.99 20.74 15 9 C -0.49 -26.89 8.97 23.18 0.21 -26.68 15 10 H 0.09 4.65 7.26 -2.91 -0.02 4.63 15 11 C 0.03 1.60 5.49 85.35 0.47 2.07 15 12 N -0.79 -46.14 11.92 21.88 0.26 -45.88 15 13 Si 1.00 39.16 29.57 68.60 2.03 41.18 15 14 H -0.26 -10.01 7.11 99.48 0.71 -9.30 15 15 H -0.27 -10.45 7.11 99.48 0.71 -9.75 15 16 H -0.25 -9.09 7.11 99.48 0.71 -8.38 15 17 N -0.51 -23.70 3.21 -529.64 -1.70 -25.40 15 18 C 0.09 2.89 10.57 127.77 1.35 4.24 15 19 H 0.07 1.96 8.14 -2.39 -0.02 1.94 15 20 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 21 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 22 H 0.14 6.98 8.06 -2.91 -0.02 6.96 15 23 H 0.28 14.63 8.29 -92.70 -0.77 13.86 15 24 H 0.07 1.99 8.14 -2.39 -0.02 1.97 15 25 H 0.09 2.44 7.67 -2.39 -0.02 2.42 15 26 H 0.08 2.61 7.45 -2.39 -0.02 2.59 15 Total: -1.00 -71.37 235.03 5.75 -65.62 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.18 Total: 13.17 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.06 Total: -4.72 kcal Atomic # 7 Polarization: -104.55 SS G_CDS: -3.27 Total: -107.82 kcal Atomic # 9 Polarization: -8.20 SS G_CDS: 0.76 Total: -7.44 kcal Atomic # 14 Polarization: 39.16 SS G_CDS: 2.03 Total: 41.18 kcal Total: -71.37 5.75 -65.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143515.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.530 kcal (2) G-P(sol) polarization free energy of solvation -71.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds