Wall clock time and date at job start Mon Mar 30 2020 02:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47017 * 2 1 4 4 F 1.39902 * 109.46929 * 119.99446 * 2 1 3 5 5 C 1.50698 * 109.47382 * 239.99557 * 2 1 3 6 6 C 1.36216 * 126.39985 * 85.02722 * 5 2 1 7 7 N 1.32764 * 108.61801 * 179.97438 * 6 5 2 8 8 C 1.32978 * 109.22346 * 359.97438 * 7 6 5 9 9 C 1.39995 * 125.96173 * 180.02562 * 8 7 6 10 10 H 1.07999 * 119.99924 * 179.97438 * 9 8 7 11 11 C 1.40235 * 119.99991 * 359.97438 * 9 8 7 12 12 N 1.30686 * 120.00216 * 359.97438 * 11 9 8 13 13 Si 1.86807 * 119.99921 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47424 * 89.99943 * 13 11 9 15 15 H 1.48502 * 109.46846 * 210.00081 * 13 11 9 16 16 H 1.48497 * 109.47084 * 329.99428 * 13 11 9 17 17 N 1.36410 * 126.40421 * 264.99820 * 5 2 1 18 18 C 1.46496 * 126.55844 * 0.04726 * 17 5 2 19 19 H 1.09004 * 109.47017 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47139 * 300.00162 * 1 2 3 21 21 H 1.09001 * 109.46820 * 60.00708 * 1 2 3 22 22 H 1.07994 * 125.69490 * 0.24348 * 6 5 2 23 23 H 0.97003 * 120.00007 * 180.02562 * 12 11 9 24 24 H 1.09006 * 109.47319 * 269.94734 * 18 17 5 25 25 H 1.09001 * 109.47397 * 29.94213 * 18 17 5 26 26 H 1.08996 * 109.47960 * 149.94621 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6594 1.1424 5 6 2.0324 -0.7105 -1.2304 6 6 2.2122 -0.1615 -2.4640 7 7 2.6674 -1.1014 -3.2839 8 6 2.7880 -2.2446 -2.6154 9 6 3.2386 -3.4610 -3.1417 10 1 3.2993 -4.3339 -2.5087 11 6 3.6113 -3.5462 -4.4910 12 7 3.5374 -2.4901 -5.2572 13 14 4.2119 -5.1696 -5.1935 14 1 3.0563 -5.9383 -5.7214 15 1 5.1754 -4.9071 -6.2925 16 1 4.8816 -5.9538 -4.1250 17 7 2.3925 -2.0233 -1.3168 18 6 2.3636 -3.0092 -0.2335 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8899 21 1 -0.3633 0.5137 -0.8901 22 1 2.0211 0.8676 -2.7297 23 1 3.7949 -2.5491 -6.1906 24 1 3.3218 -3.0062 0.2861 25 1 1.5691 -2.7550 0.4681 26 1 2.1786 -3.9999 -0.6486 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261143517.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:23 Heat of formation + Delta-G solvation = -22.236405 kcal Electronic energy + Delta-G solvation = -12613.544363 eV Core-core repulsion = 10220.511414 eV Total energy + Delta-G solvation = -2393.032949 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.61951 -41.81101 -35.43532 -34.17845 -33.51678 -30.09954 -27.69115 -26.72477 -23.77745 -22.02219 -20.55421 -18.72985 -17.51376 -16.95040 -16.67438 -16.21074 -15.55162 -15.45211 -14.57345 -14.29204 -13.66896 -13.49472 -13.30898 -13.17277 -13.06182 -12.82346 -12.40753 -12.17306 -12.00137 -11.66911 -11.08646 -9.90281 -9.84606 -9.00074 -8.36284 -6.32134 1.32403 1.43352 1.58271 1.71673 2.24942 2.61932 2.68960 3.58016 3.78759 3.85249 4.16383 4.18832 4.29213 4.53684 4.58613 4.70306 4.84379 4.89438 5.18889 5.20785 5.38263 5.69492 6.14348 6.25590 6.61201 6.96178 7.32803 8.21448 8.60014 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.064120 B = 0.010404 C = 0.009365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 436.573466 B = 2690.555360 C = 2989.152498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.186 3.814 3 H 0.109 0.891 4 F -0.226 7.226 5 C -0.168 4.168 6 C -0.030 4.030 7 N -0.560 5.560 8 C 0.342 3.658 9 C -0.493 4.493 10 H 0.089 0.911 11 C 0.032 3.968 12 N -0.791 5.791 13 Si 0.996 3.004 14 H -0.263 1.263 15 H -0.271 1.271 16 H -0.254 1.254 17 N -0.505 5.505 18 C 0.097 3.903 19 H 0.047 0.953 20 H 0.091 0.909 21 H 0.079 0.921 22 H 0.159 0.841 23 H 0.277 0.723 24 H 0.058 0.942 25 H 0.084 0.916 26 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.459 0.086 7.626 8.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.149 3.851 3 H 0.127 0.873 4 F -0.207 7.207 5 C -0.281 4.281 6 C -0.183 4.183 7 N -0.281 5.281 8 C 0.098 3.902 9 C -0.532 4.532 10 H 0.107 0.893 11 C -0.187 4.187 12 N -0.417 5.417 13 Si 0.816 3.184 14 H -0.188 1.188 15 H -0.196 1.196 16 H -0.178 1.178 17 N -0.194 5.194 18 C -0.045 4.045 19 H 0.066 0.934 20 H 0.109 0.891 21 H 0.098 0.902 22 H 0.176 0.824 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.103 0.897 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.263 0.235 6.785 7.532 hybrid contribution 0.148 -0.593 0.389 0.725 sum -3.114 -0.358 7.174 7.829 Atomic orbital electron populations 1.22288 0.92430 1.02736 1.04223 1.19816 0.95136 0.94500 0.75628 0.87286 1.92722 1.90778 1.83911 1.53245 1.21447 1.20832 0.86806 0.99047 1.22373 1.05828 0.99668 0.90411 1.71180 1.26644 0.99335 1.30954 1.20595 0.95667 0.95147 0.78791 1.18580 1.44464 0.93637 0.96560 0.89324 1.26786 0.93788 1.01683 0.96474 1.70144 1.33655 1.31376 1.06499 0.85018 0.78588 0.76527 0.78265 1.18756 1.19608 1.17786 1.45356 1.55106 1.08683 1.10266 1.21712 1.02340 0.91771 0.88724 0.93398 0.89055 0.90234 0.82415 0.91259 0.92359 0.89737 0.90640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.31 9.63 71.98 0.69 -3.62 15 2 C 0.19 6.23 4.36 29.85 0.13 6.36 15 3 H 0.11 3.10 8.14 -2.38 -0.02 3.08 15 4 F -0.23 -7.84 14.77 44.97 0.66 -7.17 15 5 C -0.17 -7.62 6.12 41.38 0.25 -7.37 15 6 C -0.03 -1.51 11.77 84.08 0.99 -0.52 15 7 N -0.56 -33.69 9.41 -194.17 -1.83 -35.52 15 8 C 0.34 19.81 7.43 133.59 0.99 20.81 15 9 C -0.49 -27.68 9.00 23.18 0.21 -27.47 15 10 H 0.09 4.55 7.16 -2.91 -0.02 4.53 15 11 C 0.03 1.71 5.50 85.35 0.47 2.18 15 12 N -0.79 -45.80 11.90 21.88 0.26 -45.54 15 13 Si 1.00 39.73 29.56 68.60 2.03 41.76 15 14 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 15 H -0.27 -10.43 7.11 99.48 0.71 -9.72 15 16 H -0.25 -9.60 7.11 99.48 0.71 -8.89 15 17 N -0.51 -24.85 3.21 -529.66 -1.70 -26.55 15 18 C 0.10 3.79 9.94 127.77 1.27 5.06 15 19 H 0.05 1.41 8.14 -2.38 -0.02 1.39 15 20 H 0.09 1.88 8.14 -2.39 -0.02 1.86 15 21 H 0.08 2.09 8.14 -2.39 -0.02 2.07 15 22 H 0.16 6.86 8.06 -2.91 -0.02 6.84 15 23 H 0.28 14.55 8.29 -92.71 -0.77 13.78 15 24 H 0.06 2.15 8.14 -2.38 -0.02 2.13 15 25 H 0.08 2.89 6.89 -2.39 -0.02 2.87 15 26 H 0.07 2.81 7.38 -2.39 -0.02 2.79 15 Total: -1.00 -69.80 232.41 5.61 -64.19 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: 1.18 Total: 13.41 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 5.01 Total: -4.58 kcal Atomic # 7 Polarization: -104.35 SS G_CDS: -3.27 Total: -107.61 kcal Atomic # 9 Polarization: -7.84 SS G_CDS: 0.66 Total: -7.17 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Total: -69.80 5.61 -64.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261143517.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.958 kcal (2) G-P(sol) polarization free energy of solvation -69.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds