Wall clock time and date at job start Mon Mar 30 2020 01:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00159 * 2 1 4 4 H 1.48503 * 109.47374 * 240.00378 * 3 2 1 5 5 H 1.48505 * 109.47064 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47578 * 120.00044 * 3 2 1 7 7 C 1.37881 * 120.00081 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00155 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00039 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.46988 * 180.02562 * 9 7 2 11 11 H 1.08997 * 109.47447 * 54.99578 * 10 9 7 12 12 O 1.42900 * 109.46929 * 294.99546 * 10 9 7 13 13 C 1.50707 * 109.46891 * 175.00019 * 10 9 7 14 14 C 1.34417 * 126.53926 * 84.97109 * 13 10 9 15 15 N 1.34361 * 108.26206 * 180.02562 * 14 13 10 16 16 C 1.31023 * 109.30322 * 359.97438 * 15 14 13 17 17 O 1.35505 * 125.76544 * 179.97438 * 16 15 14 18 18 N 1.35878 * 108.46770 * 0.26434 * 16 15 14 19 19 H 0.97003 * 126.47514 * 179.73012 * 18 16 15 20 20 H 0.96992 * 119.99962 * 359.97438 * 1 2 3 21 21 H 1.09001 * 109.46773 * 59.99610 * 9 7 2 22 22 H 1.09003 * 109.46793 * 299.99928 * 9 7 2 23 23 H 0.96704 * 114.00184 * 300.00376 * 12 10 9 24 24 H 1.07994 * 125.87231 * 0.04120 * 14 13 10 25 25 H 0.96700 * 113.99649 * 90.02792 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 1 2.9295 -3.5552 0.8412 12 8 2.9876 -3.6541 -1.2216 13 6 1.4959 -4.9637 0.1233 14 6 0.9448 -5.6684 -0.8799 15 7 0.3697 -6.7648 -0.3579 16 6 0.5439 -6.7688 0.9407 17 8 0.0989 -7.7204 1.7966 18 7 1.2407 -5.6542 1.2848 19 1 1.5091 -5.3955 2.1804 20 1 -0.4850 0.8400 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6248 -2.5571 0.8897 23 1 2.4415 -3.7455 -2.0145 24 1 0.9616 -5.3998 -1.9258 25 1 0.7257 -8.4422 1.9425 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261146047.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:54 Heat of formation + Delta-G solvation = -69.562702 kcal Electronic energy + Delta-G solvation = -12251.583044 eV Core-core repulsion = 9844.125084 eV Total energy + Delta-G solvation = -2407.457961 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -43.06321 -38.71188 -37.79918 -34.98846 -33.68581 -31.85040 -29.54471 -26.44026 -23.62728 -22.77493 -21.74446 -20.22240 -18.72726 -18.00338 -17.20000 -16.65835 -16.39085 -15.58762 -15.25206 -14.79102 -14.60147 -14.22312 -13.22176 -13.11307 -12.78186 -12.52419 -12.46480 -12.08360 -11.37308 -11.21043 -11.06453 -10.81196 -10.57780 -9.25779 -8.19199 -6.29560 0.83851 1.43331 1.45450 1.53334 1.62478 1.94663 2.42977 3.05889 3.14390 3.73369 3.86012 4.15830 4.38542 4.50489 4.71159 5.04463 5.37056 5.53782 5.59408 5.77391 5.97658 6.19013 6.79905 6.81906 6.86812 6.92690 7.39520 8.91770 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.065517 B = 0.007999 C = 0.007660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.267350 B = 3499.468143 C = 3654.375881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.963 3.037 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.530 4.530 8 H 0.063 0.937 9 C 0.009 3.991 10 C 0.201 3.799 11 H 0.099 0.901 12 O -0.551 6.551 13 C -0.027 4.027 14 C -0.026 4.026 15 N -0.514 5.514 16 C 0.371 3.629 17 O -0.444 6.444 18 N -0.557 5.557 19 H 0.431 0.569 20 H 0.263 0.737 21 H 0.005 0.995 22 H -0.001 1.001 23 H 0.385 0.615 24 H 0.188 0.812 25 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.429 -10.604 2.620 11.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.195 4.195 3 Si 0.788 3.212 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.568 4.568 8 H 0.082 0.918 9 C -0.028 4.028 10 C 0.140 3.860 11 H 0.117 0.883 12 O -0.356 6.356 13 C -0.143 4.143 14 C -0.172 4.172 15 N -0.245 5.245 16 C 0.070 3.930 17 O -0.248 6.248 18 N -0.176 5.176 19 H 0.272 0.728 20 H 0.072 0.928 21 H 0.023 0.977 22 H 0.017 0.983 23 H 0.234 0.766 24 H 0.205 0.795 25 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges 3.826 -10.805 2.650 11.764 hybrid contribution 0.353 1.189 0.641 1.396 sum 4.179 -9.615 3.291 10.989 Atomic orbital electron populations 1.70086 1.07753 1.27819 1.51734 1.25900 0.95622 1.03176 0.94848 0.85529 0.78211 0.78284 0.79188 1.19282 1.21237 1.19211 1.21470 0.93571 0.91486 1.50250 0.91839 1.19619 0.94153 0.92857 0.96214 1.20061 0.91879 0.85905 0.88153 0.88312 1.86495 1.37454 1.95917 1.15769 1.22308 1.06763 0.98996 0.86247 1.22140 1.01655 0.92973 1.00427 1.70401 1.24424 1.24119 1.05538 1.20337 0.98180 0.87358 0.87138 1.84874 1.44740 1.34053 1.61129 1.43557 1.43705 1.19731 1.10564 0.72849 0.92842 0.97679 0.98265 0.76638 0.79493 0.71593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.45 13.29 21.45 0.28 -55.16 15 2 C 0.00 0.13 5.46 84.66 0.46 0.60 15 3 Si 0.96 43.30 29.54 68.60 2.03 45.32 15 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 15 5 H -0.29 -12.74 7.11 99.48 0.71 -12.03 15 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 7 C -0.53 -28.69 8.88 25.60 0.23 -28.46 15 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 15 9 C 0.01 0.45 4.64 29.85 0.14 0.59 15 10 C 0.20 7.69 3.45 29.85 0.10 7.79 15 11 H 0.10 3.66 8.14 -2.39 -0.02 3.64 15 12 O -0.55 -20.30 12.97 -148.98 -1.93 -22.23 15 13 C -0.03 -0.93 6.31 40.80 0.26 -0.67 15 14 C -0.03 -0.87 11.23 83.43 0.94 0.07 15 15 N -0.51 -17.90 11.28 -314.07 -3.54 -21.45 15 16 C 0.37 11.13 9.49 179.84 1.71 12.84 15 17 O -0.44 -10.02 13.64 -88.06 -1.20 -11.22 15 18 N -0.56 -16.19 6.22 -297.42 -1.85 -18.04 15 19 H 0.43 9.95 8.96 -92.71 -0.83 9.12 15 20 H 0.26 14.82 8.31 -92.71 -0.77 14.05 15 21 H 0.00 0.26 8.14 -2.39 -0.02 0.24 15 22 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 15 23 H 0.38 11.80 8.23 -74.05 -0.61 11.19 15 24 H 0.19 5.50 7.59 -2.91 -0.02 5.47 15 25 H 0.42 4.37 9.06 -74.06 -0.67 3.70 15 Total: -1.00 -69.90 232.02 -3.25 -73.14 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -0.86 Total: 16.89 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: 3.83 Total: -7.25 kcal Atomic # 7 Polarization: -89.54 SS G_CDS: -5.11 Total: -94.65 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -3.13 Total: -33.45 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Total: -69.90 -3.25 -73.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261146047.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.579 kcal (2) G-P(sol) polarization free energy of solvation -69.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds