Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39494 * 2 1 4 4 C 1.50696 * 126.59121 * 0.21941 * 3 2 1 5 5 F 1.39905 * 109.46814 * 90.00778 * 4 3 2 6 6 C 1.34669 * 106.81372 * 180.26001 * 3 2 1 7 7 N 1.34128 * 108.02336 * 359.97438 * 6 3 2 8 8 C 1.30498 * 109.25660 * 0.02562 * 7 6 3 9 9 C 1.50700 * 125.65089 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47220 * 270.03806 * 9 8 7 11 11 H 1.07997 * 119.99784 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99979 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00354 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99917 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47285 * 60.00060 * 14 12 10 16 16 H 1.48504 * 109.47206 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47166 * 300.00030 * 14 12 10 18 18 H 1.09006 * 109.47414 * 269.69062 * 1 2 3 19 19 H 1.09001 * 109.47268 * 29.69093 * 1 2 3 20 20 H 1.09001 * 109.46803 * 149.69048 * 1 2 3 21 21 H 1.09005 * 109.46776 * 210.00186 * 4 3 2 22 22 H 1.08998 * 109.47110 * 330.00343 * 4 3 2 23 23 H 1.07999 * 125.98967 * 179.97438 * 6 3 2 24 24 H 1.08994 * 109.46985 * 30.04389 * 9 8 7 25 25 H 1.09003 * 109.46857 * 150.04369 * 9 8 7 26 26 H 0.97003 * 120.00510 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 1.8363 2.5428 0.0046 5 9 1.7041 2.9858 1.3251 6 6 3.5460 0.6505 -0.0058 7 7 3.5095 -0.6903 -0.0088 8 6 2.2663 -1.0870 -0.0055 9 6 1.8018 -2.5206 -0.0077 10 6 1.6429 -2.9950 -1.4292 11 1 1.8573 -2.3254 -2.2490 12 6 1.2249 -4.2841 -1.6831 13 7 0.9644 -5.0996 -0.6849 14 14 1.0286 -4.8723 -3.4452 15 1 2.3329 -4.7730 -4.1485 16 1 0.5720 -6.2854 -3.4474 17 1 0.0257 -4.0264 -4.1406 18 1 -0.3634 -0.0055 1.0277 19 1 -0.3634 0.8927 -0.5090 20 1 -0.3633 -0.8872 -0.5186 21 1 2.5795 3.1518 -0.5102 22 1 0.8774 2.6310 -0.5060 23 1 4.4368 1.2611 -0.0079 24 1 2.5379 -3.1418 0.5025 25 1 0.8446 -2.5932 0.5086 26 1 0.6706 -6.0066 -0.8635 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261153596.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -3.149716 kcal Electronic energy + Delta-G solvation = -12288.663009 eV Core-core repulsion = 9896.457721 eV Total energy + Delta-G solvation = -2392.205288 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.52127 -41.38959 -33.52237 -33.35399 -31.25260 -28.60809 -26.43738 -25.14838 -22.99673 -20.22815 -19.01325 -16.63493 -16.36271 -15.94174 -15.55678 -14.85447 -14.62490 -14.45590 -13.32560 -12.61682 -12.50239 -12.29386 -12.02374 -11.55010 -11.31119 -11.13380 -10.82750 -10.71157 -9.97809 -9.57113 -9.19488 -8.96286 -8.52092 -7.64522 -6.13706 -4.18490 2.54349 3.27353 3.32349 3.34633 3.38105 3.87949 4.38881 4.78666 4.83873 4.94202 5.18760 5.22510 5.49320 5.54821 5.73404 5.90460 6.02147 6.17572 6.90993 7.18291 7.34979 7.49127 7.80857 7.86653 8.18553 8.83730 8.89556 9.45735 10.96029 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.060264 B = 0.008638 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.507373 B = 3240.812980 C = 3298.988239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.453 5.453 3 C -0.123 4.123 4 C 0.153 3.847 5 F -0.216 7.216 6 C 0.003 3.997 7 N -0.510 5.510 8 C 0.278 3.722 9 C 0.093 3.907 10 C -0.515 4.515 11 H 0.056 0.944 12 C 0.062 3.938 13 N -0.892 5.892 14 Si 0.900 3.100 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.277 1.277 18 H 0.070 0.930 19 H 0.073 0.927 20 H 0.102 0.898 21 H 0.093 0.907 22 H 0.074 0.926 23 H 0.161 0.839 24 H 0.054 0.946 25 H 0.036 0.964 26 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.184 11.715 0.184 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.135 5.135 3 C -0.236 4.236 4 C 0.097 3.903 5 F -0.197 7.197 6 C -0.148 4.148 7 N -0.228 5.228 8 C 0.016 3.984 9 C 0.054 3.946 10 C -0.554 4.554 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.728 3.272 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.202 1.202 18 H 0.088 0.912 19 H 0.091 0.909 20 H 0.120 0.880 21 H 0.111 0.889 22 H 0.092 0.908 23 H 0.179 0.821 24 H 0.072 0.928 25 H 0.054 0.946 26 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.734 11.039 0.266 11.178 hybrid contribution -0.828 0.235 -0.904 1.248 sum -2.561 11.275 -0.639 11.580 Atomic orbital electron populations 1.21993 0.77287 1.04655 1.03053 1.45204 1.07294 1.06096 1.54892 1.21206 0.92466 0.89606 1.20355 1.19973 1.02352 0.88832 0.79169 1.92803 1.97448 1.90292 1.39161 1.22061 0.94865 0.92130 1.05735 1.70399 1.19490 1.10368 1.22497 1.24651 0.84644 0.92219 0.96926 1.17906 0.97161 0.80719 0.98815 1.20873 1.46038 0.97586 0.90933 0.92528 1.24959 0.95079 0.96389 0.97558 1.69929 1.45321 1.06823 1.30911 0.86522 0.78685 0.77654 0.84388 1.19995 1.21097 1.20247 0.91161 0.90852 0.87976 0.88881 0.90799 0.82135 0.92807 0.94631 0.92520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 10.61 59.85 0.64 1.77 15 2 N -0.45 -8.91 3.15 -116.67 -0.37 -9.28 15 3 C -0.12 -2.19 6.67 -81.60 -0.54 -2.74 15 4 C 0.15 1.97 7.84 36.00 0.28 2.25 15 5 F -0.22 -3.21 17.34 2.25 0.04 -3.17 15 6 C 0.00 0.05 11.79 -17.81 -0.21 -0.16 15 7 N -0.51 -12.11 11.25 -10.82 -0.12 -12.23 15 8 C 0.28 6.55 7.09 -155.42 -1.10 5.45 15 9 C 0.09 2.40 5.07 -29.04 -0.15 2.25 15 10 C -0.52 -14.24 9.09 -34.44 -0.31 -14.56 15 11 H 0.06 1.58 7.74 -52.49 -0.41 1.18 15 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 15 13 N -0.89 -25.55 13.29 55.43 0.74 -24.81 15 14 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 15 15 H -0.27 -6.47 7.11 56.52 0.40 -6.07 15 16 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 18 H 0.07 0.98 8.14 -51.93 -0.42 0.56 15 19 H 0.07 0.89 7.19 -51.93 -0.37 0.52 15 20 H 0.10 1.70 7.67 -51.93 -0.40 1.30 15 21 H 0.09 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.07 0.80 7.22 -51.93 -0.37 0.42 15 23 H 0.16 2.54 8.06 -52.49 -0.42 2.12 15 24 H 0.05 1.51 8.14 -51.93 -0.42 1.08 15 25 H 0.04 0.91 7.71 -51.93 -0.40 0.51 15 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 15 LS Contribution 237.82 15.07 3.58 3.58 Total: -1.00 -31.61 237.82 -5.43 -37.04 By element: Atomic # 1 Polarization: -0.36 SS G_CDS: -2.78 Total: -3.14 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -1.50 Total: -4.10 kcal Atomic # 7 Polarization: -46.57 SS G_CDS: 0.25 Total: -46.33 kcal Atomic # 9 Polarization: -3.21 SS G_CDS: 0.04 Total: -3.17 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.61 -5.43 -37.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153596.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.886 kcal (2) G-P(sol) polarization free energy of solvation -31.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds