Wall clock time and date at job start Mon Mar 30 2020 02:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39494 * 2 1 4 4 C 1.50696 * 126.59121 * 0.21941 * 3 2 1 5 5 F 1.39905 * 109.46814 * 90.00778 * 4 3 2 6 6 C 1.34669 * 106.81372 * 180.26001 * 3 2 1 7 7 N 1.34128 * 108.02336 * 359.97438 * 6 3 2 8 8 C 1.30498 * 109.25660 * 0.02562 * 7 6 3 9 9 C 1.50700 * 125.65089 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47220 * 270.03806 * 9 8 7 11 11 H 1.07997 * 119.99784 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99979 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00354 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99917 * 180.02562 * 12 10 9 15 15 H 1.48508 * 109.47285 * 60.00060 * 14 12 10 16 16 H 1.48504 * 109.47206 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47166 * 300.00030 * 14 12 10 18 18 H 1.09006 * 109.47414 * 269.69062 * 1 2 3 19 19 H 1.09001 * 109.47268 * 29.69093 * 1 2 3 20 20 H 1.09001 * 109.46803 * 149.69048 * 1 2 3 21 21 H 1.09005 * 109.46776 * 210.00186 * 4 3 2 22 22 H 1.08998 * 109.47110 * 330.00343 * 4 3 2 23 23 H 1.07999 * 125.98967 * 179.97438 * 6 3 2 24 24 H 1.08994 * 109.46985 * 30.04389 * 9 8 7 25 25 H 1.09003 * 109.46857 * 150.04369 * 9 8 7 26 26 H 0.97003 * 120.00510 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 1.8363 2.5428 0.0046 5 9 1.7041 2.9858 1.3251 6 6 3.5460 0.6505 -0.0058 7 7 3.5095 -0.6903 -0.0088 8 6 2.2663 -1.0870 -0.0055 9 6 1.8018 -2.5206 -0.0077 10 6 1.6429 -2.9950 -1.4292 11 1 1.8573 -2.3254 -2.2490 12 6 1.2249 -4.2841 -1.6831 13 7 0.9644 -5.0996 -0.6849 14 14 1.0286 -4.8723 -3.4452 15 1 2.3329 -4.7730 -4.1485 16 1 0.5720 -6.2854 -3.4474 17 1 0.0257 -4.0264 -4.1406 18 1 -0.3634 -0.0055 1.0277 19 1 -0.3634 0.8927 -0.5090 20 1 -0.3633 -0.8872 -0.5186 21 1 2.5795 3.1518 -0.5102 22 1 0.8774 2.6310 -0.5060 23 1 4.4368 1.2611 -0.0079 24 1 2.5379 -3.1418 0.5025 25 1 0.8446 -2.5932 0.5086 26 1 0.6706 -6.0066 -0.8635 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261153596.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:14:10 Heat of formation + Delta-G solvation = -23.232728 kcal Electronic energy + Delta-G solvation = -12289.533874 eV Core-core repulsion = 9896.457721 eV Total energy + Delta-G solvation = -2393.076153 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -48.60541 -42.95014 -35.51582 -34.91150 -32.91982 -30.30948 -27.80750 -26.75030 -24.86093 -21.71740 -20.59991 -18.65026 -17.84234 -17.16624 -16.74330 -16.46756 -16.09407 -15.99297 -14.69546 -14.43403 -14.21959 -13.72064 -13.64516 -13.35423 -12.84555 -12.62680 -12.53604 -12.12408 -11.93736 -11.64097 -10.80232 -10.64728 -10.52280 -9.22339 -8.24347 -6.38714 1.03536 1.40300 1.43686 1.51775 1.94056 2.20561 2.42903 3.07020 3.55492 3.86994 3.89184 3.93492 4.11233 4.35450 4.45461 4.61252 4.71129 4.78626 5.14547 5.26658 5.50957 5.65285 5.88922 6.01018 6.33681 6.68260 7.27538 7.30266 8.84724 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.060264 B = 0.008638 C = 0.008485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.507373 B = 3240.812980 C = 3298.988239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.451 5.451 3 C -0.101 4.101 4 C 0.154 3.846 5 F -0.225 7.225 6 C -0.026 4.026 7 N -0.546 5.546 8 C 0.236 3.764 9 C 0.106 3.894 10 C -0.530 4.530 11 H 0.048 0.952 12 C 0.014 3.986 13 N -0.924 5.924 14 Si 0.968 3.032 15 H -0.275 1.275 16 H -0.277 1.277 17 H -0.263 1.263 18 H 0.085 0.915 19 H 0.115 0.885 20 H 0.083 0.917 21 H 0.130 0.870 22 H 0.105 0.895 23 H 0.192 0.808 24 H 0.017 0.983 25 H 0.028 0.972 26 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.974 13.724 -0.987 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.132 5.132 3 C -0.216 4.216 4 C 0.099 3.901 5 F -0.206 7.206 6 C -0.175 4.175 7 N -0.265 5.265 8 C -0.027 4.027 9 C 0.068 3.932 10 C -0.569 4.569 11 H 0.066 0.934 12 C -0.185 4.185 13 N -0.562 5.562 14 Si 0.792 3.208 15 H -0.200 1.200 16 H -0.202 1.202 17 H -0.188 1.188 18 H 0.104 0.896 19 H 0.133 0.867 20 H 0.102 0.898 21 H 0.148 0.852 22 H 0.123 0.877 23 H 0.209 0.791 24 H 0.035 0.965 25 H 0.046 0.954 26 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.545 13.063 -0.898 13.339 hybrid contribution -0.567 -0.304 -0.486 0.806 sum -3.112 12.759 -1.384 13.206 Atomic orbital electron populations 1.22274 0.75009 1.05857 1.04453 1.45401 1.08793 1.05619 1.53387 1.22071 0.91676 0.91378 1.16471 1.20357 1.05182 0.85575 0.78999 1.92788 1.97612 1.90012 1.40179 1.22672 0.97167 0.90826 1.06846 1.70253 1.20154 1.13157 1.22932 1.23960 0.85632 0.92165 1.00916 1.17487 0.95590 0.82511 0.97648 1.21068 1.46349 0.98004 0.91477 0.93360 1.25825 0.94410 0.96323 1.01954 1.70039 1.45819 1.07234 1.33151 0.85455 0.78757 0.77542 0.79016 1.20038 1.20221 1.18757 0.89639 0.86662 0.89824 0.85171 0.87742 0.79073 0.96515 0.95386 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.90 10.61 127.77 1.36 3.26 15 2 N -0.45 -17.23 3.15 -523.04 -1.65 -18.88 15 3 C -0.10 -3.35 6.67 40.95 0.27 -3.08 15 4 C 0.15 3.26 7.84 71.23 0.56 3.82 15 5 F -0.22 -5.80 17.34 44.97 0.78 -5.02 15 6 C -0.03 -0.97 11.79 83.52 0.98 0.02 15 7 N -0.55 -26.35 11.25 -188.13 -2.12 -28.47 15 8 C 0.24 11.38 7.09 138.13 0.98 12.36 15 9 C 0.11 5.78 5.07 29.10 0.15 5.93 15 10 C -0.53 -30.12 9.09 25.60 0.23 -29.89 15 11 H 0.05 2.76 7.74 -2.91 -0.02 2.73 15 12 C 0.01 0.80 5.46 84.65 0.46 1.27 15 13 N -0.92 -54.03 13.29 21.45 0.28 -53.74 15 14 Si 0.97 43.39 29.54 68.60 2.03 45.41 15 15 H -0.28 -12.28 7.11 99.48 0.71 -11.57 15 16 H -0.28 -11.97 7.11 99.48 0.71 -11.26 15 17 H -0.26 -11.13 7.11 99.48 0.71 -10.42 15 18 H 0.09 2.23 8.14 -2.38 -0.02 2.21 15 19 H 0.12 2.35 7.19 -2.39 -0.02 2.33 15 20 H 0.08 2.76 7.67 -2.39 -0.02 2.74 15 21 H 0.13 1.89 8.14 -2.38 -0.02 1.87 15 22 H 0.10 1.65 7.22 -2.39 -0.02 1.63 15 23 H 0.19 5.64 8.06 -2.91 -0.02 5.62 15 24 H 0.02 1.00 8.14 -2.39 -0.02 0.98 15 25 H 0.03 1.51 7.71 -2.39 -0.02 1.49 15 26 H 0.27 14.75 8.31 -92.71 -0.77 13.98 15 Total: -1.00 -70.20 237.82 5.49 -64.71 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 1.17 Total: 2.33 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: 4.99 Total: -6.33 kcal Atomic # 7 Polarization: -97.62 SS G_CDS: -3.48 Total: -101.10 kcal Atomic # 9 Polarization: -5.80 SS G_CDS: 0.78 Total: -5.02 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -70.20 5.49 -64.71 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261153596.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.473 kcal (2) G-P(sol) polarization free energy of solvation -70.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds