Wall clock time and date at job start Mon Mar 30 2020 02:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99825 * 2 1 4 4 H 1.48500 * 109.47276 * 269.99561 * 3 2 1 5 5 H 1.48500 * 109.47365 * 29.99859 * 3 2 1 6 6 H 1.48506 * 109.47299 * 149.99797 * 3 2 1 7 7 C 1.37877 * 120.00204 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00228 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99972 * 0.02562 * 7 2 1 10 10 C 1.53002 * 108.70801 * 187.10741 * 9 7 2 11 11 C 1.53001 * 117.49678 * 253.86249 * 10 9 7 12 12 C 1.53006 * 117.49555 * 185.20569 * 10 9 7 13 13 C 1.52337 * 108.86740 * 305.56555 * 9 7 2 14 14 C 1.54260 * 112.58831 * 120.82015 * 13 9 7 15 15 S 1.83966 * 102.57821 * 335.47178 * 14 13 9 16 16 C 1.54254 * 108.86814 * 68.64334 * 9 7 2 17 17 H 0.96996 * 119.99686 * 0.02562 * 1 2 3 18 18 H 1.09002 * 115.55004 * 39.53288 * 10 9 7 19 19 H 1.08998 * 117.49558 * 359.97438 * 11 10 9 20 20 H 1.09000 * 117.49670 * 145.01943 * 11 10 9 21 21 H 1.09000 * 117.49374 * 214.97961 * 12 10 9 22 22 H 1.09000 * 117.49850 * 359.97310 * 12 10 9 23 23 H 1.08996 * 108.87045 * 241.63907 * 13 9 7 24 24 H 1.09006 * 108.86917 * 0.02562 * 13 9 7 25 25 H 1.08991 * 110.78506 * 93.74095 * 14 13 9 26 26 H 1.09006 * 110.78916 * 217.20405 * 14 13 9 27 27 H 1.08996 * 110.79067 * 21.98444 * 16 9 7 28 28 H 1.09000 * 110.78796 * 145.25119 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 6 2.2511 -3.6431 0.1805 11 6 2.5704 -4.5016 -1.0451 12 6 1.7134 -5.0726 0.0875 13 6 0.2783 -2.5064 1.1728 14 6 -1.1878 -2.6785 0.7250 15 16 -1.1550 -2.0507 -1.0039 16 6 0.5419 -2.6657 -1.3591 17 1 -0.4849 0.8400 -0.0004 18 1 3.0593 -3.4543 0.8871 19 1 2.0677 -4.2517 -1.9794 20 1 3.5885 -4.8779 -1.1445 21 1 2.1682 -5.8242 0.7328 22 1 0.6473 -5.1979 -0.1013 23 1 0.5404 -3.3246 1.8434 24 1 0.3727 -1.5655 1.7150 25 1 -1.4790 -3.7285 0.7497 26 1 -1.8543 -2.0763 1.3426 27 1 1.0225 -2.0552 -2.1235 28 1 0.5218 -3.7134 -1.6592 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261157093.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:46 Heat of formation + Delta-G solvation = 22.845796 kcal Electronic energy + Delta-G solvation = -11389.226534 eV Core-core repulsion = 9532.068921 eV Total energy + Delta-G solvation = -1857.157613 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70042 -35.61531 -33.08570 -30.17923 -27.49814 -25.24902 -23.10133 -22.52755 -19.70316 -18.08156 -17.55657 -16.49408 -15.83939 -15.52400 -15.01384 -14.13366 -13.63900 -13.51495 -12.94001 -12.81198 -12.61671 -12.46955 -12.13693 -12.06784 -11.99156 -11.32507 -11.14217 -10.59271 -10.43042 -10.27876 -10.13827 -8.57162 -6.86635 -5.85651 1.42572 1.47343 1.52996 1.66402 2.05067 2.53769 3.19904 3.38034 4.09762 4.29963 4.36883 4.43455 4.46531 4.53757 4.77848 4.81001 4.89527 4.94901 5.05664 5.16474 5.41010 5.42196 5.53383 5.75470 5.90839 6.06035 6.52924 6.97069 7.64423 9.09231 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.034790 B = 0.018128 C = 0.014059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.628011 B = 1544.196742 C = 1991.068684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.031 3.969 3 Si 0.921 3.079 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.278 1.278 7 C -0.547 4.547 8 H 0.041 0.959 9 C 0.092 3.908 10 C -0.139 4.139 11 C -0.186 4.186 12 C -0.173 4.173 13 C -0.081 4.081 14 C -0.038 4.038 15 S -0.304 6.304 16 C -0.033 4.033 17 H 0.247 0.753 18 H 0.085 0.915 19 H 0.091 0.909 20 H 0.099 0.901 21 H 0.105 0.895 22 H 0.087 0.913 23 H 0.051 0.949 24 H 0.047 0.953 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.056 0.944 28 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.632 -7.484 0.732 7.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.175 4.175 3 Si 0.749 3.251 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.586 4.586 8 H 0.059 0.941 9 C 0.090 3.910 10 C -0.159 4.159 11 C -0.222 4.222 12 C -0.210 4.210 13 C -0.120 4.120 14 C -0.186 4.186 15 S -0.076 6.076 16 C -0.181 4.181 17 H 0.058 0.942 18 H 0.103 0.897 19 H 0.109 0.891 20 H 0.117 0.883 21 H 0.123 0.877 22 H 0.106 0.894 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.417 -6.736 0.056 6.749 hybrid contribution 1.397 0.904 0.600 1.769 sum 0.980 -5.832 0.656 5.950 Atomic orbital electron populations 1.71275 1.04732 1.24336 1.46143 1.25661 0.95735 1.00462 0.95626 0.86159 0.79014 0.82562 0.77321 1.21503 1.21546 1.20355 1.21126 0.92146 0.90933 1.54377 0.94111 1.18238 0.91741 0.92338 0.88634 1.22459 1.01259 0.91378 1.00814 1.23126 1.00882 1.04504 0.93732 1.22962 0.99438 0.96365 1.02249 1.21764 0.91371 0.99992 0.98874 1.23803 1.00056 1.00729 0.93998 1.86742 1.21658 1.82805 1.16408 1.24390 0.92648 0.99381 1.01688 0.94228 0.89708 0.89109 0.88299 0.87656 0.89438 0.93095 0.93390 0.89903 0.90630 0.92526 0.90471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.87 7.97 21.45 0.17 -44.70 15 2 C 0.03 1.65 4.81 84.65 0.41 2.06 15 3 Si 0.92 43.41 29.54 68.60 2.03 45.44 15 4 H -0.29 -13.70 7.11 99.48 0.71 -12.99 15 5 H -0.29 -13.55 7.11 99.48 0.71 -12.85 15 6 H -0.28 -13.00 7.11 99.48 0.71 -12.29 15 7 C -0.55 -28.76 7.54 25.60 0.19 -28.57 15 8 H 0.04 2.19 7.73 -2.91 -0.02 2.17 15 9 C 0.09 4.18 0.56 -52.72 -0.03 4.15 15 10 C -0.14 -5.34 4.63 -10.79 -0.05 -5.39 15 11 C -0.19 -6.00 9.56 30.62 0.29 -5.71 15 12 C -0.17 -5.28 9.36 30.62 0.29 -5.00 15 13 C -0.08 -3.57 4.80 30.80 0.15 -3.42 15 14 C -0.04 -1.55 7.27 72.41 0.53 -1.02 15 15 S -0.30 -14.13 19.91 -56.49 -1.12 -15.25 15 16 C -0.03 -1.46 5.16 72.41 0.37 -1.09 15 17 H 0.25 13.29 8.31 -92.71 -0.77 12.52 15 18 H 0.08 3.34 8.13 -2.39 -0.02 3.32 15 19 H 0.09 3.03 5.83 -2.39 -0.01 3.02 15 20 H 0.10 2.79 8.14 -2.39 -0.02 2.77 15 21 H 0.11 2.70 8.14 -2.39 -0.02 2.68 15 22 H 0.09 2.69 7.66 -2.39 -0.02 2.67 15 23 H 0.05 2.00 7.30 -2.39 -0.02 1.98 15 24 H 0.05 2.42 6.39 -2.38 -0.02 2.41 15 25 H 0.08 2.90 8.14 -2.39 -0.02 2.88 15 26 H 0.08 3.10 8.14 -2.38 -0.02 3.08 15 27 H 0.06 2.79 7.79 -2.39 -0.02 2.77 15 28 H 0.08 3.04 5.03 -2.39 -0.01 3.03 15 Total: -1.00 -55.71 229.17 4.36 -51.36 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: 1.14 Total: 7.15 kcal Atomic # 6 Polarization: -46.14 SS G_CDS: 2.15 Total: -43.99 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.17 Total: -44.70 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -14.13 SS G_CDS: -1.12 Total: -15.25 kcal Total: -55.71 4.36 -51.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261157093.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.203 kcal (2) G-P(sol) polarization free energy of solvation -55.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds