Wall clock time and date at job start Mon Mar 30 2020 02:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00259 * 2 1 4 4 H 1.48504 * 109.46776 * 269.99408 * 3 2 1 5 5 H 1.48497 * 109.47418 * 29.99524 * 3 2 1 6 6 H 1.48500 * 109.47305 * 149.99964 * 3 2 1 7 7 C 1.37879 * 119.99663 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00123 * 0.02562 * 7 2 1 10 10 H 1.09001 * 115.54339 * 34.27119 * 9 7 2 11 11 C 1.52981 * 117.49569 * 248.60803 * 9 7 2 12 12 C 1.53095 * 60.06491 * 252.49386 * 11 9 7 13 13 C 1.52929 * 117.37825 * 252.73956 * 12 11 9 14 14 C 1.53075 * 109.68420 * 279.49789 * 13 12 11 15 15 S 1.81627 * 109.05703 * 299.80699 * 14 13 12 16 16 C 1.81628 * 102.49627 * 55.77576 * 15 14 13 17 17 C 1.52940 * 117.37388 * 107.28202 * 12 11 9 18 18 H 0.97002 * 119.99750 * 0.02562 * 1 2 3 19 19 H 1.09002 * 117.49762 * 0.02562 * 11 9 7 20 20 H 1.08998 * 117.49391 * 144.98768 * 11 9 7 21 21 H 1.08999 * 109.43118 * 39.55342 * 13 12 11 22 22 H 1.08998 * 109.44074 * 159.42692 * 13 12 11 23 23 H 1.09001 * 109.53959 * 179.97438 * 14 13 12 24 24 H 1.08998 * 109.54775 * 59.68376 * 14 13 12 25 25 H 1.09004 * 109.53943 * 184.35411 * 16 15 14 26 26 H 1.08994 * 109.60997 * 64.14299 * 16 15 14 27 27 H 1.08996 * 109.43404 * 200.57040 * 17 12 11 28 28 H 1.08998 * 109.43062 * 320.44126 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 1 0.3122 -2.5000 -0.5536 11 6 1.3258 -3.3581 1.2643 12 6 2.0737 -3.7914 0.0006 13 6 1.5100 -4.9815 -0.7769 14 6 1.9417 -6.2874 -0.1051 15 16 3.7557 -6.3776 -0.0947 16 6 4.2210 -4.8365 0.7464 17 6 3.5968 -3.6531 0.0026 18 1 -0.4850 0.8401 -0.0004 19 1 1.9199 -2.9790 2.0959 20 1 0.4365 -3.9240 1.5416 21 1 0.4216 -4.9232 -0.7904 22 1 1.8865 -4.9579 -1.7995 23 1 1.5383 -7.1340 -0.6608 24 1 1.5697 -6.3109 0.9192 25 1 5.3063 -4.7350 0.7474 26 1 3.8557 -4.8555 1.7731 27 1 3.9609 -3.6375 -1.0246 28 1 3.8759 -2.7242 0.4999 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261162939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:25 Heat of formation + Delta-G solvation = 3.002521 kcal Electronic energy + Delta-G solvation = -10859.554642 eV Core-core repulsion = 9001.536560 eV Total energy + Delta-G solvation = -1858.018082 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.94326 -32.88814 -31.18591 -31.06499 -25.59844 -24.12035 -22.65722 -20.31554 -18.23357 -16.32938 -16.01651 -14.79319 -14.45270 -13.80130 -13.31951 -13.22216 -12.74331 -12.34832 -12.03098 -11.61899 -11.17644 -10.99224 -10.88242 -10.69402 -10.30627 -9.86484 -9.60769 -9.19351 -8.97371 -8.41443 -8.25053 -7.31899 -6.13513 -4.12556 2.19649 2.91822 3.24968 3.32202 3.34646 4.34016 4.82216 5.26226 5.29883 5.37025 5.50267 5.66595 5.73071 5.80634 6.05359 6.07885 6.40173 6.48389 6.53936 6.67831 6.79162 6.86384 6.95882 7.28364 7.57906 7.84537 8.36999 8.88429 9.47857 10.97144 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.062598 B = 0.009719 C = 0.008875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.190858 B = 2880.205799 C = 3154.333801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.064 0.936 9 C 0.053 3.947 10 H 0.076 0.924 11 C -0.201 4.201 12 C -0.177 4.177 13 C -0.075 4.075 14 C -0.068 4.068 15 S -0.297 6.297 16 C -0.069 4.069 17 C -0.071 4.071 18 H 0.263 0.737 19 H 0.075 0.925 20 H 0.062 0.938 21 H 0.066 0.934 22 H 0.068 0.932 23 H 0.092 0.908 24 H 0.078 0.922 25 H 0.092 0.908 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.231 -7.961 0.401 9.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.534 4.534 8 H 0.082 0.918 9 C 0.035 3.965 10 H 0.094 0.906 11 C -0.239 4.239 12 C -0.178 4.178 13 C -0.113 4.113 14 C -0.217 4.217 15 S -0.071 6.071 16 C -0.217 4.217 17 C -0.109 4.109 18 H 0.072 0.928 19 H 0.093 0.907 20 H 0.081 0.919 21 H 0.085 0.915 22 H 0.087 0.913 23 H 0.111 0.889 24 H 0.097 0.903 25 H 0.111 0.889 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.731 -8.642 0.007 9.852 hybrid contribution -0.411 1.722 0.638 1.882 sum 4.321 -6.920 0.645 8.184 Atomic orbital electron populations 1.69964 1.06137 1.26916 1.49312 1.25041 0.94849 0.99340 0.94415 0.86552 0.79855 0.83112 0.78273 1.20451 1.21118 1.19734 1.20733 0.92795 0.89287 1.50551 0.91783 1.20010 0.95563 0.87416 0.93557 0.90629 1.23095 1.00461 1.07502 0.92860 1.21568 0.93146 0.99641 1.03398 1.21169 1.00097 0.91327 0.98740 1.23324 0.92602 1.01578 1.04161 1.86332 1.09041 1.31921 1.79824 1.23414 1.02819 0.94267 1.01218 1.21122 0.93504 0.96363 0.99958 0.92765 0.90670 0.91903 0.91513 0.91349 0.88930 0.90309 0.88940 0.90351 0.91673 0.89756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.44 13.13 55.43 0.73 -24.71 15 2 C 0.07 1.82 5.46 -17.82 -0.10 1.72 15 3 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 15 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 15 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 15 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 15 7 C -0.50 -13.28 8.60 -34.44 -0.30 -13.57 15 8 H 0.06 1.66 5.93 -52.49 -0.31 1.35 15 9 C 0.05 1.31 5.26 -91.68 -0.48 0.83 15 10 H 0.08 2.03 7.90 -51.93 -0.41 1.62 15 11 C -0.20 -4.39 9.66 -26.69 -0.26 -4.64 15 12 C -0.18 -3.57 1.76 -154.43 -0.27 -3.84 15 13 C -0.07 -1.30 5.46 -26.73 -0.15 -1.45 15 14 C -0.07 -1.05 6.47 37.20 0.24 -0.81 15 15 S -0.30 -4.75 22.25 -107.50 -2.39 -7.15 15 16 C -0.07 -1.11 6.47 37.19 0.24 -0.87 15 17 C -0.07 -1.33 4.97 -26.72 -0.13 -1.46 15 18 H 0.26 7.13 8.31 -40.82 -0.34 6.79 15 19 H 0.07 1.67 8.14 -51.93 -0.42 1.24 15 20 H 0.06 1.30 8.14 -51.93 -0.42 0.88 15 21 H 0.07 1.15 8.08 -51.93 -0.42 0.73 15 22 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 23 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 24 H 0.08 1.20 8.14 -51.93 -0.42 0.78 15 25 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 15 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 15 28 H 0.08 1.69 6.09 -51.93 -0.32 1.38 15 LS Contribution 241.78 15.07 3.64 3.64 Total: -1.00 -27.47 241.78 -8.22 -35.69 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.97 Total: 0.83 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: -1.20 Total: -24.09 kcal Atomic # 7 Polarization: -25.44 SS G_CDS: 0.73 Total: -24.71 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.39 Total: -7.15 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -27.47 -8.22 -35.69 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261162939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.692 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds