Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09003 * 115.55718 * 325.71223 * 9 7 2 11 11 C 1.53013 * 117.50439 * 111.39269 * 9 7 2 12 12 C 1.52927 * 59.99322 * 107.48160 * 11 9 7 13 13 C 1.52796 * 117.75112 * 252.36690 * 12 11 9 14 14 C 1.52611 * 110.42726 * 149.57035 * 13 12 11 15 15 C 1.52955 * 110.26181 * 66.95746 * 14 13 12 16 16 S 1.81710 * 109.13102 * 294.36982 * 15 14 13 17 17 C 1.53351 * 117.40194 * 107.37752 * 12 11 9 18 18 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 19 19 H 1.09000 * 117.50705 * 214.97076 * 11 9 7 20 20 H 1.09001 * 117.49501 * 359.97078 * 11 9 7 21 21 H 1.09011 * 109.30858 * 269.86529 * 13 12 11 22 22 H 1.09003 * 109.31166 * 29.46749 * 13 12 11 23 23 H 1.08996 * 109.34235 * 187.20154 * 14 13 12 24 24 H 1.08998 * 109.33718 * 306.88122 * 14 13 12 25 25 H 1.08998 * 109.52999 * 54.26220 * 15 14 13 26 26 H 1.08994 * 109.52755 * 174.40689 * 15 14 13 27 27 H 1.08993 * 109.68526 * 323.76904 * 17 12 11 28 28 H 1.09007 * 109.67786 * 84.32804 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.3121 -2.4999 0.5542 11 6 1.3270 -3.3589 -1.2629 12 6 2.0728 -3.7891 0.0009 13 6 3.5954 -3.6613 0.0067 14 6 4.1018 -3.3906 1.4206 15 6 3.8580 -4.6087 2.3129 16 16 2.0684 -4.8564 2.5067 17 6 1.5096 -4.9834 0.7807 18 1 -0.4850 -0.8401 -0.0004 19 1 0.4381 -3.9255 -1.5404 20 1 1.9215 -2.9802 -2.0943 21 1 4.0363 -4.5872 -0.3631 22 1 3.8905 -2.8372 -0.6429 23 1 5.1699 -3.1760 1.3866 24 1 3.5741 -2.5314 1.8347 25 1 4.3003 -5.4921 1.8524 26 1 4.3116 -4.4414 3.2898 27 1 0.4204 -4.9643 0.7452 28 1 1.8755 -5.9126 0.3438 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165947.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = 0.846790 kcal Electronic energy + Delta-G solvation = -11014.817011 eV Core-core repulsion = 9156.705450 eV Total energy + Delta-G solvation = -1858.111562 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.98921 -33.58290 -32.21474 -28.10073 -26.71465 -24.69154 -21.63266 -20.77490 -18.44695 -16.46940 -16.05849 -14.89861 -14.03687 -13.79089 -13.59727 -13.02459 -12.88908 -12.36623 -11.89839 -11.47030 -11.02888 -10.91562 -10.81848 -10.53943 -10.39694 -10.13290 -9.49328 -9.26371 -8.64717 -8.32817 -8.21644 -7.17310 -6.40877 -4.06415 2.26568 2.97583 3.41534 3.42661 3.61481 4.48889 4.85952 5.24708 5.29016 5.39387 5.46608 5.58169 5.64381 5.83460 5.99903 6.07112 6.21481 6.33760 6.56589 6.60429 6.69923 6.76106 6.93606 7.13483 7.35248 8.23495 8.39251 8.82145 9.62019 10.98515 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.042577 B = 0.012160 C = 0.011271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.471068 B = 2302.116792 C = 2483.731093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.067 2.933 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.282 1.282 7 C -0.566 4.566 8 H 0.057 0.943 9 C 0.040 3.960 10 H 0.064 0.936 11 C -0.202 4.202 12 C -0.164 4.164 13 C -0.069 4.069 14 C -0.119 4.119 15 C -0.072 4.072 16 S -0.281 6.281 17 C -0.027 4.027 18 H 0.271 0.729 19 H 0.064 0.936 20 H 0.080 0.920 21 H 0.040 0.960 22 H 0.076 0.924 23 H 0.060 0.940 24 H 0.092 0.908 25 H 0.072 0.928 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -7.338 1.515 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.182 4.182 3 Si 0.895 3.105 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.207 1.207 7 C -0.603 4.603 8 H 0.075 0.925 9 C 0.021 3.979 10 H 0.082 0.918 11 C -0.242 4.242 12 C -0.166 4.166 13 C -0.106 4.106 14 C -0.158 4.158 15 C -0.220 4.220 16 S -0.053 6.053 17 C -0.175 4.175 18 H 0.082 0.918 19 H 0.083 0.917 20 H 0.098 0.902 21 H 0.059 0.941 22 H 0.094 0.906 23 H 0.078 0.922 24 H 0.110 0.890 25 H 0.090 0.910 26 H 0.113 0.887 27 H 0.111 0.889 28 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.481 -5.768 2.507 8.343 hybrid contribution 0.875 -1.840 -1.199 2.364 sum 6.356 -7.608 1.308 10.000 Atomic orbital electron populations 1.70773 1.06957 1.30882 1.45310 1.25849 0.96517 1.02589 0.93268 0.83570 0.74973 0.75396 0.76564 1.21429 1.21302 1.20716 1.21486 0.93961 0.90103 1.54763 0.92459 1.20011 0.95595 0.88974 0.93328 0.91848 1.23267 1.00649 1.07406 0.92921 1.21443 0.93849 0.98512 1.02755 1.20771 0.93077 1.00379 0.96385 1.21661 1.00577 0.97848 0.95710 1.23305 0.93850 1.01424 1.03467 1.86499 1.09158 1.95720 1.13973 1.22899 1.02674 0.99613 0.92323 0.91799 0.91700 0.90155 0.94133 0.90569 0.92193 0.88971 0.90966 0.88741 0.88855 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.93 13.65 55.43 0.76 -26.17 15 2 C 0.02 0.65 5.46 -17.82 -0.10 0.55 15 3 Si 1.07 24.60 29.90 -169.99 -5.08 19.52 15 4 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.29 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 15 7 C -0.57 -15.23 8.06 -34.44 -0.28 -15.51 15 8 H 0.06 1.51 5.86 -52.49 -0.31 1.20 15 9 C 0.04 0.98 4.96 -91.79 -0.46 0.52 15 10 H 0.06 1.70 7.06 -51.93 -0.37 1.33 15 11 C -0.20 -4.42 9.65 -26.76 -0.26 -4.68 15 12 C -0.16 -3.36 1.84 -154.49 -0.28 -3.64 15 13 C -0.07 -1.29 4.62 -27.04 -0.12 -1.42 15 14 C -0.12 -2.08 5.52 -26.95 -0.15 -2.23 15 15 C -0.07 -1.13 6.40 37.13 0.24 -0.89 15 16 S -0.28 -5.11 22.33 -107.50 -2.40 -7.51 15 17 C -0.03 -0.50 6.19 37.34 0.23 -0.27 15 18 H 0.27 8.06 6.79 -40.82 -0.28 7.78 15 19 H 0.06 1.32 8.14 -51.93 -0.42 0.89 15 20 H 0.08 1.78 8.14 -51.93 -0.42 1.36 15 21 H 0.04 0.68 8.14 -51.92 -0.42 0.26 15 22 H 0.08 1.55 6.70 -51.93 -0.35 1.20 15 23 H 0.06 0.90 8.14 -51.93 -0.42 0.48 15 24 H 0.09 1.90 7.40 -51.93 -0.38 1.52 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.09 1.32 8.14 -51.93 -0.42 0.89 15 27 H 0.09 1.70 8.12 -51.93 -0.42 1.28 15 28 H 0.07 1.15 8.14 -51.92 -0.42 0.72 15 LS Contribution 238.83 15.07 3.60 3.60 Total: -1.00 -28.46 238.83 -8.17 -36.62 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -3.86 Total: 1.50 kcal Atomic # 6 Polarization: -26.38 SS G_CDS: -1.18 Total: -27.56 kcal Atomic # 7 Polarization: -26.93 SS G_CDS: 0.76 Total: -26.17 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.08 Total: 19.52 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.40 Total: -7.51 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -28.46 -8.17 -36.62 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165947.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.468 kcal (2) G-P(sol) polarization free energy of solvation -28.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds