Wall clock time and date at job start Mon Mar 30 2020 02:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09003 * 115.55718 * 325.71223 * 9 7 2 11 11 C 1.53013 * 117.50439 * 111.39269 * 9 7 2 12 12 C 1.52927 * 59.99322 * 107.48160 * 11 9 7 13 13 C 1.52796 * 117.75112 * 252.36690 * 12 11 9 14 14 C 1.52611 * 110.42726 * 149.57035 * 13 12 11 15 15 C 1.52955 * 110.26181 * 66.95746 * 14 13 12 16 16 S 1.81710 * 109.13102 * 294.36982 * 15 14 13 17 17 C 1.53351 * 117.40194 * 107.37752 * 12 11 9 18 18 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 19 19 H 1.09000 * 117.50705 * 214.97076 * 11 9 7 20 20 H 1.09001 * 117.49501 * 359.97078 * 11 9 7 21 21 H 1.09011 * 109.30858 * 269.86529 * 13 12 11 22 22 H 1.09003 * 109.31166 * 29.46749 * 13 12 11 23 23 H 1.08996 * 109.34235 * 187.20154 * 14 13 12 24 24 H 1.08998 * 109.33718 * 306.88122 * 14 13 12 25 25 H 1.08998 * 109.52999 * 54.26220 * 15 14 13 26 26 H 1.08994 * 109.52755 * 174.40689 * 15 14 13 27 27 H 1.08993 * 109.68526 * 323.76904 * 17 12 11 28 28 H 1.09007 * 109.67786 * 84.32804 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.3121 -2.4999 0.5542 11 6 1.3270 -3.3589 -1.2629 12 6 2.0728 -3.7891 0.0009 13 6 3.5954 -3.6613 0.0067 14 6 4.1018 -3.3906 1.4206 15 6 3.8580 -4.6087 2.3129 16 16 2.0684 -4.8564 2.5067 17 6 1.5096 -4.9834 0.7807 18 1 -0.4850 -0.8401 -0.0004 19 1 0.4381 -3.9255 -1.5404 20 1 1.9215 -2.9802 -2.0943 21 1 4.0363 -4.5872 -0.3631 22 1 3.8905 -2.8372 -0.6429 23 1 5.1699 -3.1760 1.3866 24 1 3.5741 -2.5314 1.8347 25 1 4.3003 -5.4921 1.8524 26 1 4.3116 -4.4414 3.2898 27 1 0.4204 -4.9643 0.7452 28 1 1.8755 -5.9126 0.3438 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165947.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:10 Heat of formation + Delta-G solvation = -14.390113 kcal Electronic energy + Delta-G solvation = -11015.477733 eV Core-core repulsion = 9156.705450 eV Total energy + Delta-G solvation = -1858.772283 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.69582 -35.23907 -34.09541 -29.73090 -28.12562 -26.73727 -23.13573 -22.62880 -20.16729 -18.37749 -17.53288 -16.56381 -15.75149 -15.46868 -15.16997 -14.51846 -14.36474 -13.88544 -13.70347 -13.16454 -12.75183 -12.62129 -12.37537 -12.23966 -11.94862 -11.91301 -11.15077 -10.91903 -10.56978 -10.24919 -10.02421 -8.61280 -8.59062 -6.23427 0.88005 1.54122 1.59949 1.62049 1.80092 2.58682 3.00989 3.44651 3.78349 3.95678 3.99075 4.12488 4.15437 4.46993 4.55532 4.57948 4.66058 4.86102 4.90067 4.93576 5.00888 5.16203 5.35255 5.45077 5.53736 6.16609 6.23891 6.64775 7.52162 8.80115 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.042577 B = 0.012160 C = 0.011271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.471068 B = 2302.116792 C = 2483.731093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.034 4.034 3 Si 1.112 2.888 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.288 1.288 7 C -0.565 4.565 8 H 0.061 0.939 9 C -0.002 4.002 10 H 0.031 0.969 11 C -0.195 4.195 12 C -0.135 4.135 13 C -0.071 4.071 14 C -0.116 4.116 15 C -0.060 4.060 16 S -0.317 6.317 17 C -0.024 4.024 18 H 0.256 0.744 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.072 0.928 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.053 0.947 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.587 -8.538 1.521 12.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.232 4.232 3 Si 0.934 3.066 4 H -0.194 1.194 5 H -0.195 1.195 6 H -0.214 1.214 7 C -0.602 4.602 8 H 0.079 0.921 9 C -0.021 4.021 10 H 0.049 0.951 11 C -0.235 4.235 12 C -0.137 4.137 13 C -0.109 4.109 14 C -0.155 4.155 15 C -0.208 4.208 16 S -0.090 6.090 17 C -0.172 4.172 18 H 0.065 0.935 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.091 0.909 22 H 0.076 0.924 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.118 0.882 26 H 0.134 0.866 27 H 0.104 0.896 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.798 -6.994 2.512 10.773 hybrid contribution 0.185 -1.554 -1.188 1.965 sum 7.983 -8.549 1.324 11.771 Atomic orbital electron populations 1.70900 1.08086 1.29920 1.48773 1.27255 0.96578 1.06410 0.92929 0.82993 0.74166 0.71501 0.77920 1.19415 1.19537 1.21397 1.21790 0.94228 0.91100 1.53087 0.92118 1.19861 0.95658 0.90622 0.95967 0.95119 1.23212 1.01524 1.06312 0.92454 1.21547 0.94911 0.96543 1.00703 1.20831 0.91543 1.01260 0.97233 1.21586 1.01841 0.97287 0.94756 1.23395 0.91267 1.01565 1.04533 1.86702 1.12430 1.95808 1.14043 1.22892 1.02486 0.99640 0.92160 0.93454 0.90350 0.90553 0.90942 0.92418 0.89142 0.92825 0.88151 0.86644 0.89557 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.00 13.65 21.45 0.29 -57.71 15 2 C -0.03 -1.93 5.46 84.66 0.46 -1.46 15 3 Si 1.11 49.77 29.90 68.60 2.05 51.82 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 6 H -0.29 -13.11 7.11 99.48 0.71 -12.40 15 7 C -0.56 -30.83 8.06 25.60 0.21 -30.62 15 8 H 0.06 3.19 5.86 -2.91 -0.02 3.18 15 9 C 0.00 -0.11 4.96 -11.55 -0.06 -0.17 15 10 H 0.03 1.73 7.06 -2.39 -0.02 1.72 15 11 C -0.19 -8.44 9.65 30.57 0.29 -8.14 15 12 C -0.14 -5.37 1.84 -52.17 -0.10 -5.46 15 13 C -0.07 -2.48 4.62 30.40 0.14 -2.34 15 14 C -0.12 -3.69 5.52 30.45 0.17 -3.53 15 15 C -0.06 -1.64 6.40 71.97 0.46 -1.18 15 16 S -0.32 -10.93 22.33 -56.49 -1.26 -12.20 15 17 C -0.02 -0.83 6.19 72.10 0.45 -0.38 15 18 H 0.26 16.04 6.79 -92.70 -0.63 15.41 15 19 H 0.08 3.13 8.14 -2.39 -0.02 3.11 15 20 H 0.08 3.34 8.14 -2.39 -0.02 3.32 15 21 H 0.07 2.10 8.14 -2.38 -0.02 2.08 15 22 H 0.06 2.22 6.70 -2.39 -0.02 2.21 15 23 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 24 H 0.05 2.14 7.40 -2.39 -0.02 2.12 15 25 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 26 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 27 H 0.09 3.09 8.12 -2.39 -0.02 3.07 15 28 H 0.10 2.90 8.14 -2.38 -0.02 2.88 15 Total: -1.00 -62.66 238.83 4.38 -58.28 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 1.27 Total: 13.09 kcal Atomic # 6 Polarization: -55.31 SS G_CDS: 2.03 Total: -53.29 kcal Atomic # 7 Polarization: -58.00 SS G_CDS: 0.29 Total: -57.71 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.05 Total: 51.82 kcal Atomic # 16 Polarization: -10.93 SS G_CDS: -1.26 Total: -12.20 kcal Total: -62.66 4.38 -58.28 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165947.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.891 kcal (2) G-P(sol) polarization free energy of solvation -62.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds