Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47143 * 270.00411 * 3 2 1 5 5 H 1.48501 * 109.46854 * 30.00108 * 3 2 1 6 6 H 1.48500 * 109.46679 * 150.00142 * 3 2 1 7 7 C 1.37881 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99516 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00323 * 359.97438 * 7 2 1 10 10 H 1.08997 * 115.56834 * 325.70601 * 9 7 2 11 11 C 1.53021 * 117.49316 * 111.39764 * 9 7 2 12 12 C 1.52932 * 117.49742 * 180.02562 * 9 7 2 13 13 C 1.52796 * 117.74832 * 144.88448 * 12 9 7 14 14 C 1.52613 * 110.42091 * 149.55958 * 13 12 9 15 15 C 1.52955 * 110.26262 * 66.95839 * 14 13 12 16 16 S 1.81700 * 109.13228 * 294.36883 * 15 14 13 17 17 C 1.53346 * 117.40692 * 359.88987 * 12 9 7 18 18 H 0.97002 * 120.00151 * 359.97438 * 1 2 3 19 19 H 1.09000 * 117.50128 * 0.02562 * 11 9 7 20 20 H 1.09006 * 117.49593 * 214.97301 * 11 9 7 21 21 H 1.09003 * 109.30860 * 269.85413 * 13 12 9 22 22 H 1.08999 * 109.31064 * 29.26756 * 13 12 9 23 23 H 1.09000 * 109.33815 * 187.19790 * 14 13 12 24 24 H 1.08994 * 109.34062 * 306.87900 * 14 13 12 25 25 H 1.09002 * 109.52489 * 54.26692 * 15 14 13 26 26 H 1.08993 * 109.53060 * 174.40031 * 15 14 13 27 27 H 1.09002 * 109.68240 * 323.78162 * 17 12 9 28 28 H 1.09002 * 109.68069 * 84.33203 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.3125 -2.5005 0.5538 11 6 1.3261 -3.3583 -1.2646 12 6 2.0727 -3.7890 -0.0005 13 6 1.5220 -4.9833 0.7773 14 6 1.9610 -6.2915 0.1254 15 6 3.4748 -6.4670 0.2568 16 16 4.3102 -5.1723 -0.7062 17 6 3.6001 -3.6528 -0.0032 18 1 -0.4850 0.8401 0.0004 19 1 1.9209 -2.9797 -2.0959 20 1 0.4370 -3.9248 -1.5417 21 1 1.8933 -4.9485 1.8016 22 1 0.4332 -4.9343 0.7898 23 1 1.4572 -7.1253 0.6144 24 1 1.6921 -6.2766 -0.9307 25 1 3.7615 -6.3837 1.3051 26 1 3.7622 -7.4474 -0.1227 27 1 3.8912 -2.7961 -0.6109 28 1 3.9584 -3.5182 1.0175 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = 2.318646 kcal Electronic energy + Delta-G solvation = -10828.886282 eV Core-core repulsion = 8970.838545 eV Total energy + Delta-G solvation = -1858.047737 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -37.84389 -33.77991 -32.06850 -27.80837 -26.99044 -25.28356 -21.89986 -20.26603 -18.11915 -16.47190 -16.00045 -14.81813 -14.42501 -13.98184 -13.45554 -12.88888 -12.81126 -12.56028 -11.62836 -11.34023 -11.17399 -10.98399 -10.95909 -10.74736 -10.44800 -10.20113 -9.49216 -9.34755 -9.03690 -8.36416 -8.12244 -7.19297 -6.13850 -4.13150 2.30588 3.05682 3.25906 3.32827 3.35730 4.34338 4.89475 5.10527 5.19372 5.37636 5.44740 5.64390 5.76148 5.83873 6.04829 6.06861 6.32653 6.37343 6.54231 6.57642 6.70595 6.86320 6.92931 7.25150 7.56757 7.83486 8.35310 8.87077 9.47232 10.96654 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.056679 B = 0.010208 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.893355 B = 2742.343548 C = 3054.092686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.894 3.106 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.498 4.498 8 H 0.062 0.938 9 C 0.055 3.945 10 H 0.077 0.923 11 C -0.187 4.187 12 C -0.173 4.173 13 C -0.080 4.080 14 C -0.117 4.117 15 C -0.072 4.072 16 S -0.307 6.307 17 C -0.010 4.010 18 H 0.263 0.737 19 H 0.078 0.922 20 H 0.065 0.935 21 H 0.055 0.945 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.073 0.927 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.109 0.891 28 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.803 -8.862 1.143 9.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.535 4.535 8 H 0.080 0.920 9 C 0.034 3.966 10 H 0.095 0.905 11 C -0.225 4.225 12 C -0.175 4.175 13 C -0.118 4.118 14 C -0.156 4.156 15 C -0.220 4.220 16 S -0.079 6.079 17 C -0.158 4.158 18 H 0.073 0.927 19 H 0.096 0.904 20 H 0.083 0.917 21 H 0.074 0.926 22 H 0.083 0.917 23 H 0.080 0.920 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.447 -8.869 0.335 9.927 hybrid contribution -0.443 0.944 0.850 1.346 sum 4.004 -7.925 1.185 8.958 Atomic orbital electron populations 1.69961 1.06126 1.26967 1.49134 1.25029 0.94854 0.99339 0.94320 0.86552 0.79897 0.83063 0.78310 1.20457 1.21059 1.19670 1.20701 0.92694 0.89334 1.50800 0.91976 1.20066 0.95411 0.87170 0.93948 0.90475 1.23067 1.00203 1.06648 0.92622 1.21548 0.91509 0.99959 1.04468 1.20935 1.00385 0.92393 0.98055 1.21640 0.93527 0.98035 1.02413 1.23242 0.98205 0.98971 1.01622 1.86539 1.59651 1.05279 1.56476 1.22941 0.96145 0.94155 1.02524 0.92723 0.90384 0.91682 0.92593 0.91683 0.91998 0.90847 0.90635 0.88937 0.87276 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.13 55.43 0.73 -24.62 15 2 C 0.07 1.86 5.46 -17.82 -0.10 1.76 15 3 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 15 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.82 15 7 C -0.50 -13.33 8.61 -34.44 -0.30 -13.63 15 8 H 0.06 1.62 6.10 -52.48 -0.32 1.30 15 9 C 0.05 1.35 5.28 -91.80 -0.48 0.87 15 10 H 0.08 2.06 7.90 -51.93 -0.41 1.65 15 11 C -0.19 -4.17 9.67 -26.72 -0.26 -4.43 15 12 C -0.17 -3.53 1.84 -154.47 -0.28 -3.82 15 13 C -0.08 -1.38 5.35 -27.03 -0.14 -1.53 15 14 C -0.12 -1.72 5.72 -26.95 -0.15 -1.87 15 15 C -0.07 -1.03 6.40 37.13 0.24 -0.79 15 16 S -0.31 -5.37 22.33 -107.50 -2.40 -7.77 15 17 C -0.01 -0.20 5.46 37.34 0.20 0.00 15 18 H 0.26 7.12 8.31 -40.82 -0.34 6.78 15 19 H 0.08 1.80 8.14 -51.93 -0.42 1.37 15 20 H 0.06 1.37 8.14 -51.93 -0.42 0.95 15 21 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 22 H 0.06 1.12 8.09 -51.93 -0.42 0.70 15 23 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.07 1.15 8.14 -51.93 -0.42 0.73 15 25 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 15 27 H 0.11 2.30 6.54 -51.93 -0.34 1.97 15 28 H 0.07 1.41 8.14 -51.93 -0.42 0.99 15 LS Contribution 242.18 15.07 3.65 3.65 Total: -1.00 -27.49 242.18 -8.33 -35.81 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -4.01 Total: 0.53 kcal Atomic # 6 Polarization: -22.17 SS G_CDS: -1.28 Total: -23.45 kcal Atomic # 7 Polarization: -25.34 SS G_CDS: 0.73 Total: -24.62 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Atomic # 16 Polarization: -5.37 SS G_CDS: -2.40 Total: -7.77 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.49 -8.33 -35.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.134 kcal (2) G-P(sol) polarization free energy of solvation -27.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds