Wall clock time and date at job start Mon Mar 30 2020 02:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00104 * 2 1 4 4 H 1.48502 * 109.47143 * 270.00411 * 3 2 1 5 5 H 1.48501 * 109.46854 * 30.00108 * 3 2 1 6 6 H 1.48500 * 109.46679 * 150.00142 * 3 2 1 7 7 C 1.37881 * 119.99507 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99516 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00323 * 359.97438 * 7 2 1 10 10 H 1.08997 * 115.56834 * 325.70601 * 9 7 2 11 11 C 1.53021 * 117.49316 * 111.39764 * 9 7 2 12 12 C 1.52932 * 117.49742 * 180.02562 * 9 7 2 13 13 C 1.52796 * 117.74832 * 144.88448 * 12 9 7 14 14 C 1.52613 * 110.42091 * 149.55958 * 13 12 9 15 15 C 1.52955 * 110.26262 * 66.95839 * 14 13 12 16 16 S 1.81700 * 109.13228 * 294.36883 * 15 14 13 17 17 C 1.53346 * 117.40692 * 359.88987 * 12 9 7 18 18 H 0.97002 * 120.00151 * 359.97438 * 1 2 3 19 19 H 1.09000 * 117.50128 * 0.02562 * 11 9 7 20 20 H 1.09006 * 117.49593 * 214.97301 * 11 9 7 21 21 H 1.09003 * 109.30860 * 269.85413 * 13 12 9 22 22 H 1.08999 * 109.31064 * 29.26756 * 13 12 9 23 23 H 1.09000 * 109.33815 * 187.19790 * 14 13 12 24 24 H 1.08994 * 109.34062 * 306.87900 * 14 13 12 25 25 H 1.09002 * 109.52489 * 54.26692 * 15 14 13 26 26 H 1.08993 * 109.53060 * 174.40031 * 15 14 13 27 27 H 1.09002 * 109.68240 * 323.78162 * 17 12 9 28 28 H 1.09002 * 109.68069 * 84.33203 * 17 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 1 0.3125 -2.5005 0.5538 11 6 1.3261 -3.3583 -1.2646 12 6 2.0727 -3.7890 -0.0005 13 6 1.5220 -4.9833 0.7773 14 6 1.9610 -6.2915 0.1254 15 6 3.4748 -6.4670 0.2568 16 16 4.3102 -5.1723 -0.7062 17 6 3.6001 -3.6528 -0.0032 18 1 -0.4850 0.8401 0.0004 19 1 1.9209 -2.9797 -2.0959 20 1 0.4370 -3.9248 -1.5417 21 1 1.8933 -4.9485 1.8016 22 1 0.4332 -4.9343 0.7898 23 1 1.4572 -7.1253 0.6144 24 1 1.6921 -6.2766 -0.9307 25 1 3.7615 -6.3837 1.3051 26 1 3.7622 -7.4474 -0.1227 27 1 3.8912 -2.7961 -0.6109 28 1 3.9584 -3.5182 1.0175 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165948.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:12 Heat of formation + Delta-G solvation = -11.873361 kcal Electronic energy + Delta-G solvation = -10829.501694 eV Core-core repulsion = 8970.838545 eV Total energy + Delta-G solvation = -1858.663149 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.51402 -35.31920 -33.94305 -29.45736 -28.46306 -27.17763 -23.27461 -22.11471 -19.73294 -18.42549 -17.46243 -16.61094 -15.87396 -15.63151 -15.03119 -14.39906 -14.19559 -14.01782 -13.44438 -13.08349 -12.86463 -12.77802 -12.40926 -12.27732 -12.00872 -11.93928 -11.24125 -11.13441 -10.70392 -10.29497 -9.86037 -8.58322 -8.20649 -6.24978 0.95221 1.40557 1.41319 1.51931 1.67705 2.39228 2.99314 3.47232 3.85120 4.02709 4.06936 4.11137 4.35142 4.53768 4.64792 4.72627 4.84959 4.92428 4.98225 5.02945 5.09187 5.15932 5.39001 5.49082 5.59888 5.77724 6.33319 6.81012 7.37742 8.90843 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.056679 B = 0.010208 C = 0.009166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.893355 B = 2742.343548 C = 3054.092686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.264 1.264 7 C -0.509 4.509 8 H 0.063 0.937 9 C 0.016 3.984 10 H 0.048 0.952 11 C -0.184 4.184 12 C -0.142 4.142 13 C -0.082 4.082 14 C -0.110 4.110 15 C -0.065 4.065 16 S -0.316 6.316 17 C -0.013 4.013 18 H 0.264 0.736 19 H 0.065 0.935 20 H 0.075 0.925 21 H 0.066 0.934 22 H 0.061 0.939 23 H 0.098 0.902 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.122 0.878 27 H 0.086 0.914 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.866 -10.492 1.545 11.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.188 1.188 7 C -0.547 4.547 8 H 0.081 0.919 9 C -0.005 4.005 10 H 0.067 0.933 11 C -0.222 4.222 12 C -0.144 4.144 13 C -0.120 4.120 14 C -0.149 4.149 15 C -0.213 4.213 16 S -0.089 6.089 17 C -0.161 4.161 18 H 0.073 0.927 19 H 0.084 0.916 20 H 0.093 0.907 21 H 0.084 0.916 22 H 0.080 0.920 23 H 0.116 0.884 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.140 0.860 27 H 0.104 0.896 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.523 -10.511 0.737 11.896 hybrid contribution -0.771 1.339 0.724 1.706 sum 4.751 -9.172 1.461 10.432 Atomic orbital electron populations 1.70082 1.07610 1.27712 1.50878 1.25847 0.95650 1.02800 0.94278 0.85536 0.78804 0.78896 0.78362 1.20109 1.20687 1.18810 1.21043 0.92960 0.90572 1.50096 0.91867 1.19912 0.95609 0.88830 0.96102 0.93341 1.22964 1.00922 1.06120 0.92206 1.21618 0.91870 0.98613 1.02295 1.20998 1.00221 0.92450 0.98325 1.21586 0.94068 0.97330 1.01898 1.23420 0.97327 0.98549 1.01984 1.86593 1.59980 1.05018 1.57320 1.22766 0.95480 0.95288 1.02562 0.92750 0.91648 0.90674 0.91557 0.92007 0.88386 0.91764 0.89157 0.85992 0.89567 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.47 13.13 21.45 0.28 -54.19 15 2 C 0.01 0.75 5.46 84.66 0.46 1.21 15 3 Si 0.96 43.43 29.54 68.60 2.03 45.45 15 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 5 H -0.28 -12.47 7.11 99.48 0.71 -11.76 15 6 H -0.26 -11.47 7.11 99.48 0.71 -10.76 15 7 C -0.51 -27.93 8.61 25.60 0.22 -27.71 15 8 H 0.06 3.36 6.10 -2.91 -0.02 3.34 15 9 C 0.02 0.82 5.28 -11.56 -0.06 0.76 15 10 H 0.05 2.71 7.90 -2.39 -0.02 2.69 15 11 C -0.18 -8.28 9.67 30.60 0.30 -7.99 15 12 C -0.14 -5.74 1.84 -52.16 -0.10 -5.83 15 13 C -0.08 -2.67 5.35 30.40 0.16 -2.50 15 14 C -0.11 -2.79 5.72 30.45 0.17 -2.62 15 15 C -0.07 -1.58 6.40 71.97 0.46 -1.12 15 16 S -0.32 -10.34 22.33 -56.49 -1.26 -11.60 15 17 C -0.01 -0.51 5.46 72.10 0.39 -0.12 15 18 H 0.26 14.66 8.31 -92.71 -0.77 13.89 15 19 H 0.06 3.07 8.14 -2.39 -0.02 3.05 15 20 H 0.07 3.17 8.14 -2.38 -0.02 3.15 15 21 H 0.07 2.03 8.14 -2.39 -0.02 2.01 15 22 H 0.06 2.04 8.09 -2.39 -0.02 2.02 15 23 H 0.10 1.89 8.14 -2.39 -0.02 1.87 15 24 H 0.06 1.79 8.14 -2.39 -0.02 1.77 15 25 H 0.09 2.01 8.14 -2.39 -0.02 1.99 15 26 H 0.12 2.35 8.14 -2.39 -0.02 2.34 15 27 H 0.09 3.68 6.54 -2.39 -0.02 3.66 15 28 H 0.08 2.90 8.14 -2.39 -0.02 2.89 15 Total: -1.00 -59.81 242.18 4.18 -55.63 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.12 Total: 10.62 kcal Atomic # 6 Polarization: -47.93 SS G_CDS: 2.01 Total: -45.92 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.28 Total: -54.19 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 16 Polarization: -10.34 SS G_CDS: -1.26 Total: -11.60 kcal Total: -59.81 4.18 -55.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165948.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.759 kcal (2) G-P(sol) polarization free energy of solvation -59.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds