Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08993 * 115.55312 * 34.31588 * 9 7 2 11 11 C 1.53018 * 117.49629 * 248.58947 * 9 7 2 12 12 C 1.52933 * 59.99913 * 252.52041 * 11 9 7 13 13 C 1.52790 * 117.76080 * 252.39426 * 12 11 9 14 14 C 1.52598 * 110.47229 * 278.90903 * 13 12 11 15 15 C 1.52957 * 110.26668 * 293.05973 * 14 13 12 16 16 S 1.81709 * 109.09795 * 65.66508 * 15 14 13 17 17 C 1.53348 * 117.41338 * 107.34468 * 12 11 9 18 18 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 19 19 H 1.08992 * 117.50388 * 0.02562 * 11 9 7 20 20 H 1.09002 * 117.49579 * 145.02956 * 11 9 7 21 21 H 1.09002 * 109.30488 * 39.21859 * 13 12 11 22 22 H 1.08996 * 109.30067 * 158.59687 * 13 12 11 23 23 H 1.08999 * 109.34172 * 172.81708 * 14 13 12 24 24 H 1.09000 * 109.21188 * 53.22513 * 14 13 12 25 25 H 1.09007 * 109.53465 * 305.77788 * 15 14 13 26 26 H 1.09003 * 109.60094 * 185.59297 * 15 14 13 27 27 H 1.09001 * 109.67403 * 207.44615 * 17 12 11 28 28 H 1.09003 * 109.67456 * 327.97777 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.9815 -0.3817 0.5555 11 6 4.2186 -1.6897 -1.2622 12 6 4.2180 -2.5509 0.0017 13 6 5.5260 -2.6698 0.7824 14 6 6.4392 -3.7091 0.1385 15 6 5.8316 -5.1060 0.2757 16 16 4.2957 -5.1840 -0.6920 17 6 3.3349 -3.8046 0.0013 18 1 -0.4850 0.8400 -0.0004 19 1 3.5938 -2.0155 -2.0937 20 1 5.1539 -1.2032 -1.5392 21 1 6.0297 -1.7033 0.7909 22 1 5.3076 -2.9679 1.8078 23 1 7.4120 -3.6887 0.6299 24 1 6.5637 -3.4717 -0.9180 25 1 5.6123 -5.3067 1.3245 26 1 6.5359 -5.8494 -0.0978 27 1 3.0351 -4.0425 1.0219 28 1 2.4498 -3.6298 -0.6103 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261165949.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = 5.052199 kcal Electronic energy + Delta-G solvation = -10864.572861 eV Core-core repulsion = 9006.643659 eV Total energy + Delta-G solvation = -1857.929201 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -38.03945 -33.85636 -32.14150 -28.07256 -27.10644 -25.43411 -22.01007 -20.07829 -18.19035 -17.02653 -16.05183 -14.86901 -14.33235 -14.16844 -13.31237 -13.00391 -12.87008 -12.72841 -12.16738 -11.42649 -11.25653 -11.09585 -10.95879 -10.79060 -10.59514 -9.83649 -9.53191 -9.40668 -9.13972 -8.59726 -8.30318 -7.23416 -6.16590 -4.13913 2.25837 3.01125 3.26700 3.33706 3.34143 4.35724 4.70948 5.02037 5.11126 5.28256 5.34310 5.51804 5.68751 5.73250 5.96665 5.97459 6.16460 6.26153 6.35876 6.44272 6.50773 6.67901 6.72370 7.03104 7.21474 7.67357 8.44499 8.85526 9.45009 10.94745 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.057121 B = 0.010839 C = 0.009675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.066035 B = 2582.549427 C = 2893.414649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.075 3.925 3 Si 0.885 3.115 4 H -0.275 1.275 5 H -0.265 1.265 6 H -0.289 1.289 7 C -0.491 4.491 8 H 0.080 0.920 9 C -0.001 4.001 10 H 0.072 0.928 11 C -0.192 4.192 12 C -0.153 4.153 13 C -0.083 4.083 14 C -0.117 4.117 15 C -0.074 4.074 16 S -0.301 6.301 17 C -0.013 4.013 18 H 0.266 0.734 19 H 0.086 0.914 20 H 0.068 0.932 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.063 0.937 24 H 0.073 0.927 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.958 -5.206 1.056 12.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.129 4.129 3 Si 0.713 3.287 4 H -0.201 1.201 5 H -0.190 1.190 6 H -0.215 1.215 7 C -0.527 4.527 8 H 0.098 0.902 9 C -0.022 4.022 10 H 0.090 0.910 11 C -0.230 4.230 12 C -0.155 4.155 13 C -0.121 4.121 14 C -0.156 4.156 15 C -0.223 4.223 16 S -0.074 6.074 17 C -0.160 4.160 18 H 0.076 0.924 19 H 0.104 0.896 20 H 0.086 0.914 21 H 0.082 0.918 22 H 0.077 0.923 23 H 0.081 0.919 24 H 0.092 0.908 25 H 0.095 0.905 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 10.486 -5.858 0.247 12.014 hybrid contribution 0.716 1.645 0.887 2.002 sum 11.202 -4.213 1.134 12.022 Atomic orbital electron populations 1.69897 1.06354 1.27294 1.49633 1.25014 0.94690 0.99273 0.93873 0.86709 0.80122 0.83207 0.78708 1.20099 1.18978 1.21483 1.20593 0.87305 0.94639 1.50210 0.90224 1.20611 0.95442 0.90843 0.95303 0.90989 1.23213 1.01836 1.05142 0.92808 1.21367 0.96947 0.93503 1.03633 1.20976 0.94148 0.98613 0.98362 1.21629 0.98145 0.93386 1.02406 1.23258 0.96815 1.00430 1.01765 1.86613 1.18731 1.45769 1.56274 1.22967 0.98602 0.91340 1.03093 0.92406 0.89564 0.91377 0.91773 0.92269 0.91886 0.90793 0.90540 0.88825 0.90503 0.86798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 13.96 55.43 0.77 -25.82 15 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 15 3 Si 0.88 21.05 27.75 -169.99 -4.72 16.33 15 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 15 5 H -0.26 -6.00 6.03 56.52 0.34 -5.65 15 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 15 7 C -0.49 -13.28 9.16 -34.44 -0.32 -13.60 15 8 H 0.08 2.30 6.34 -52.49 -0.33 1.97 15 9 C 0.00 -0.02 4.52 -91.78 -0.41 -0.44 15 10 H 0.07 1.66 5.90 -51.93 -0.31 1.35 15 11 C -0.19 -3.97 9.67 -26.76 -0.26 -4.22 15 12 C -0.15 -2.98 1.84 -154.48 -0.28 -3.26 15 13 C -0.08 -1.35 5.34 -27.04 -0.14 -1.50 15 14 C -0.12 -1.61 5.72 -26.96 -0.15 -1.76 15 15 C -0.07 -1.02 6.41 37.14 0.24 -0.79 15 16 S -0.30 -5.18 22.33 -107.50 -2.40 -7.58 15 17 C -0.01 -0.25 5.45 37.34 0.20 -0.04 15 18 H 0.27 7.41 8.31 -40.82 -0.34 7.07 15 19 H 0.09 1.87 8.14 -51.93 -0.42 1.45 15 20 H 0.07 1.28 8.14 -51.93 -0.42 0.86 15 21 H 0.06 1.01 8.09 -51.93 -0.42 0.59 15 22 H 0.06 0.93 8.14 -51.93 -0.42 0.51 15 23 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 25 H 0.08 1.00 8.14 -51.92 -0.42 0.58 15 26 H 0.09 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.08 1.47 8.14 -51.93 -0.42 1.04 15 28 H 0.11 2.47 6.55 -51.93 -0.34 2.12 15 LS Contribution 238.21 15.07 3.59 3.59 Total: -1.00 -28.16 238.21 -7.96 -36.12 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -3.98 Total: 0.99 kcal Atomic # 6 Polarization: -22.40 SS G_CDS: -1.23 Total: -23.63 kcal Atomic # 7 Polarization: -26.59 SS G_CDS: 0.77 Total: -25.82 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.72 Total: 16.33 kcal Atomic # 16 Polarization: -5.18 SS G_CDS: -2.40 Total: -7.58 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -28.16 -7.96 -36.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165949.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.170 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds