Wall clock time and date at job start Mon Mar 30 2020 02:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 H 1.08993 * 115.55312 * 34.31588 * 9 7 2 11 11 C 1.53018 * 117.49629 * 248.58947 * 9 7 2 12 12 C 1.52933 * 59.99913 * 252.52041 * 11 9 7 13 13 C 1.52790 * 117.76080 * 252.39426 * 12 11 9 14 14 C 1.52598 * 110.47229 * 278.90903 * 13 12 11 15 15 C 1.52957 * 110.26668 * 293.05973 * 14 13 12 16 16 S 1.81709 * 109.09795 * 65.66508 * 15 14 13 17 17 C 1.53348 * 117.41338 * 107.34468 * 12 11 9 18 18 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 19 19 H 1.08992 * 117.50388 * 0.02562 * 11 9 7 20 20 H 1.09002 * 117.49579 * 145.02956 * 11 9 7 21 21 H 1.09002 * 109.30488 * 39.21859 * 13 12 11 22 22 H 1.08996 * 109.30067 * 158.59687 * 13 12 11 23 23 H 1.08999 * 109.34172 * 172.81708 * 14 13 12 24 24 H 1.09000 * 109.21188 * 53.22513 * 14 13 12 25 25 H 1.09007 * 109.53465 * 305.77788 * 15 14 13 26 26 H 1.09003 * 109.60094 * 185.59297 * 15 14 13 27 27 H 1.09001 * 109.67403 * 207.44615 * 17 12 11 28 28 H 1.09003 * 109.67456 * 327.97777 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 1 3.9815 -0.3817 0.5555 11 6 4.2186 -1.6897 -1.2622 12 6 4.2180 -2.5509 0.0017 13 6 5.5260 -2.6698 0.7824 14 6 6.4392 -3.7091 0.1385 15 6 5.8316 -5.1060 0.2757 16 16 4.2957 -5.1840 -0.6920 17 6 3.3349 -3.8046 0.0013 18 1 -0.4850 0.8400 -0.0004 19 1 3.5938 -2.0155 -2.0937 20 1 5.1539 -1.2032 -1.5392 21 1 6.0297 -1.7033 0.7909 22 1 5.3076 -2.9679 1.8078 23 1 7.4120 -3.6887 0.6299 24 1 6.5637 -3.4717 -0.9180 25 1 5.6123 -5.3067 1.3245 26 1 6.5359 -5.8494 -0.0978 27 1 3.0351 -4.0425 1.0219 28 1 2.4498 -3.6298 -0.6103 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261165949.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:14 Heat of formation + Delta-G solvation = -10.691967 kcal Electronic energy + Delta-G solvation = -10865.255579 eV Core-core repulsion = 9006.643659 eV Total energy + Delta-G solvation = -1858.611920 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.61843 -35.30263 -34.07143 -29.70477 -28.54774 -27.25201 -23.28250 -21.84657 -19.73339 -19.00043 -17.45835 -16.54954 -15.78916 -15.74114 -14.80384 -14.71040 -14.38196 -14.04970 -13.77896 -13.10259 -12.94028 -12.73292 -12.34954 -12.28396 -11.96166 -11.68632 -11.28547 -11.15937 -10.74087 -10.49863 -9.97071 -8.61767 -8.29342 -6.30662 0.91719 1.38245 1.39962 1.49423 1.66021 2.36810 2.88689 3.39254 3.80778 4.00454 4.03525 4.07977 4.27806 4.46537 4.57451 4.64685 4.81715 4.89704 4.94152 5.00600 5.03648 5.13821 5.30932 5.38973 5.56194 5.67317 6.32611 6.71240 7.30994 8.85781 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.057121 B = 0.010839 C = 0.009675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.066035 B = 2582.549427 C = 2893.414649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.011 3.989 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.241 1.241 6 H -0.288 1.288 7 C -0.494 4.494 8 H 0.040 0.960 9 C -0.032 4.032 10 H 0.080 0.920 11 C -0.181 4.181 12 C -0.132 4.132 13 C -0.084 4.084 14 C -0.110 4.110 15 C -0.066 4.066 16 S -0.319 6.319 17 C -0.015 4.015 18 H 0.267 0.733 19 H 0.065 0.935 20 H 0.097 0.903 21 H 0.075 0.925 22 H 0.066 0.934 23 H 0.101 0.899 24 H 0.068 0.932 25 H 0.088 0.912 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.557 -5.189 1.525 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.164 1.164 6 H -0.215 1.215 7 C -0.532 4.532 8 H 0.058 0.942 9 C -0.053 4.053 10 H 0.098 0.902 11 C -0.219 4.219 12 C -0.134 4.134 13 C -0.122 4.122 14 C -0.149 4.149 15 C -0.214 4.214 16 S -0.091 6.091 17 C -0.163 4.163 18 H 0.076 0.924 19 H 0.084 0.916 20 H 0.115 0.885 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.120 0.880 24 H 0.087 0.913 25 H 0.107 0.893 26 H 0.140 0.860 27 H 0.091 0.909 28 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.110 -5.860 0.717 15.295 hybrid contribution -0.403 1.479 0.733 1.699 sum 13.707 -4.381 1.450 14.463 Atomic orbital electron populations 1.70053 1.08362 1.28259 1.52186 1.25949 0.95460 1.03410 0.93819 0.85621 0.79547 0.78053 0.79048 1.19583 1.16419 1.21462 1.20831 0.89908 0.93218 1.49219 0.94159 1.20483 0.92983 0.93895 0.97946 0.90198 1.23141 1.02002 1.04946 0.91852 1.21507 0.97880 0.91460 1.02577 1.21051 0.92439 1.00426 0.98244 1.21598 0.99078 0.91979 1.02243 1.23457 0.94537 1.01604 1.01784 1.86674 1.21205 1.44041 1.57195 1.22740 0.98202 0.93076 1.02245 0.92424 0.91605 0.88461 0.90591 0.91542 0.88039 0.91342 0.89324 0.85976 0.90936 0.90508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.90 13.96 21.45 0.30 -58.60 15 2 C 0.01 0.63 5.47 84.65 0.46 1.10 15 3 Si 0.95 43.52 27.75 68.60 1.90 45.42 15 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 15 5 H -0.24 -9.93 6.03 99.48 0.60 -9.33 15 6 H -0.29 -13.04 7.11 99.48 0.71 -12.33 15 7 C -0.49 -27.80 9.16 25.60 0.23 -27.57 15 8 H 0.04 2.51 6.34 -2.91 -0.02 2.49 15 9 C -0.03 -1.47 4.52 -11.54 -0.05 -1.52 15 10 H 0.08 3.50 5.90 -2.39 -0.01 3.49 15 11 C -0.18 -7.26 9.67 30.58 0.30 -6.96 15 12 C -0.13 -4.99 1.84 -52.17 -0.10 -5.09 15 13 C -0.08 -2.40 5.34 30.39 0.16 -2.24 15 14 C -0.11 -2.48 5.72 30.45 0.17 -2.31 15 15 C -0.07 -1.53 6.41 71.97 0.46 -1.07 15 16 S -0.32 -10.49 22.33 -56.49 -1.26 -11.76 15 17 C -0.01 -0.59 5.45 72.10 0.39 -0.19 15 18 H 0.27 15.48 8.31 -92.71 -0.77 14.71 15 19 H 0.07 2.88 8.14 -2.39 -0.02 2.86 15 20 H 0.10 3.32 8.14 -2.39 -0.02 3.30 15 21 H 0.08 2.03 8.09 -2.39 -0.02 2.01 15 22 H 0.07 1.82 8.14 -2.39 -0.02 1.81 15 23 H 0.10 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 15 25 H 0.09 1.91 8.14 -2.38 -0.02 1.89 15 26 H 0.12 2.24 8.14 -2.39 -0.02 2.22 15 27 H 0.07 2.84 8.14 -2.39 -0.02 2.82 15 28 H 0.08 3.56 6.55 -2.39 -0.02 3.54 15 Total: -1.00 -63.37 238.21 4.00 -59.37 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: 1.02 Total: 11.42 kcal Atomic # 6 Polarization: -47.89 SS G_CDS: 2.04 Total: -45.85 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.30 Total: -58.60 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.90 Total: 45.42 kcal Atomic # 16 Polarization: -10.49 SS G_CDS: -1.26 Total: -11.76 kcal Total: -63.37 4.00 -59.37 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261165949.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.677 kcal (2) G-P(sol) polarization free energy of solvation -63.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds