Wall clock time and date at job start Mon Mar 30 2020 02:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35432 * 116.99935 * 2 1 4 4 O 1.34175 * 126.86097 * 0.13825 * 3 2 1 5 5 N 1.20907 * 111.49779 * 180.29323 * 4 3 2 6 6 C 1.30333 * 111.78358 * 359.74052 * 5 4 3 7 7 C 1.36377 * 126.85941 * 179.97438 * 3 2 1 8 8 C 1.50701 * 128.03620 * 0.02562 * 7 3 2 9 9 H 1.09002 * 109.47060 * 324.69938 * 8 7 3 10 10 N 1.46901 * 109.46921 * 204.69757 * 8 7 3 11 11 C 1.50699 * 109.47269 * 84.69791 * 8 7 3 12 12 H 1.08000 * 119.99792 * 0.02562 * 11 8 7 13 13 C 1.37878 * 119.99902 * 179.97438 * 11 8 7 14 14 N 1.31515 * 120.00126 * 0.02562 * 13 11 8 15 15 Si 1.86803 * 119.99745 * 180.02562 * 13 11 8 16 16 H 1.48501 * 109.47438 * 0.02562 * 15 13 11 17 17 H 1.48491 * 109.47045 * 120.00577 * 15 13 11 18 18 H 1.48501 * 109.46950 * 240.00369 * 15 13 11 19 19 H 1.09002 * 109.47192 * 59.99893 * 1 2 3 20 20 H 1.09003 * 109.47214 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46914 * 299.99729 * 1 2 3 22 22 H 1.08003 * 126.74426 * 180.02562 * 6 5 4 23 23 H 1.00898 * 111.00245 * 299.99784 * 10 8 7 24 24 H 1.00904 * 111.00313 * 63.95601 * 10 8 7 25 25 H 0.96999 * 120.00073 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 8 1.4527 2.4112 0.0026 5 7 2.2674 3.3046 -0.0039 6 6 3.4875 2.8465 -0.0062 7 6 3.3874 1.4403 0.0005 8 6 4.5055 0.4298 0.0006 9 1 4.2126 -0.4362 0.5942 10 7 5.7123 1.0350 0.5798 11 6 4.7907 -0.0041 -1.4141 12 1 4.2197 0.4107 -2.2316 13 6 5.7813 -0.9298 -1.6649 14 7 6.4769 -1.4344 -0.6694 15 14 6.1352 -1.4670 -3.4186 16 1 5.2211 -0.7561 -4.3482 17 1 7.5423 -1.1399 -3.7621 18 1 5.9238 -2.9319 -3.5397 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.3966 3.4296 -0.0113 23 1 6.0043 1.8405 0.0470 24 1 5.5667 1.2758 1.5488 25 1 7.1736 -2.0860 -0.8458 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261277000.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:18 Heat of formation + Delta-G solvation = 6.421179 kcal Electronic energy + Delta-G solvation = -12657.525173 eV Core-core repulsion = 10253.362120 eV Total energy + Delta-G solvation = -2404.163052 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.82342 -39.71013 -37.16005 -34.42126 -33.01915 -31.54024 -28.20785 -28.11569 -25.20654 -23.11349 -21.97493 -19.91691 -19.01500 -18.31686 -16.90485 -16.60128 -16.21901 -16.04539 -15.87933 -14.99233 -14.38837 -14.24913 -13.48568 -12.94648 -12.77434 -12.73086 -12.50292 -12.23045 -11.82763 -11.56486 -11.00583 -10.53198 -9.43202 -8.97282 -7.95680 -6.16455 0.56969 1.37457 1.43961 1.47436 1.53868 1.57133 2.48718 2.52263 3.26654 3.41170 4.09607 4.26224 4.31506 4.38518 4.54187 4.66852 4.71207 5.12195 5.47353 5.77695 5.99344 6.20218 6.66629 7.11194 7.23121 7.29677 7.55181 9.07979 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.038339 B = 0.011980 C = 0.010619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.149223 B = 2336.732023 C = 2636.214065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.271 6.271 3 C 0.142 3.858 4 O 0.056 5.944 5 N -0.383 5.383 6 C 0.027 3.973 7 C -0.243 4.243 8 C 0.307 3.693 9 H 0.013 0.987 10 N -0.815 5.815 11 C -0.539 4.539 12 H 0.040 0.960 13 C 0.037 3.963 14 N -0.879 5.879 15 Si 0.948 3.052 16 H -0.274 1.274 17 H -0.279 1.279 18 H -0.280 1.280 19 H 0.068 0.932 20 H 0.133 0.867 21 H 0.074 0.926 22 H 0.211 0.789 23 H 0.327 0.673 24 H 0.314 0.686 25 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 4.191 1.339 10.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.182 6.182 3 C 0.035 3.965 4 O -0.004 6.004 5 N -0.101 5.101 6 C -0.150 4.150 7 C -0.251 4.251 8 C 0.196 3.804 9 H 0.031 0.969 10 N -0.342 5.342 11 C -0.577 4.577 12 H 0.058 0.942 13 C -0.167 4.167 14 N -0.515 5.515 15 Si 0.774 3.226 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.206 1.206 19 H 0.087 0.913 20 H 0.151 0.849 21 H 0.092 0.908 22 H 0.228 0.772 23 H 0.139 0.861 24 H 0.126 0.874 25 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -9.117 4.281 1.243 10.148 hybrid contribution -0.072 -0.166 -0.703 0.726 sum -9.189 4.115 0.540 10.082 Atomic orbital electron populations 1.23519 0.74909 1.06769 1.03179 1.86491 1.24912 1.17756 1.89033 1.22559 0.90549 0.81134 1.02292 1.84733 1.33938 1.10995 1.70768 1.73808 1.00972 1.10914 1.24413 1.24710 0.96889 0.92521 1.00889 1.22260 0.93882 0.96854 1.12060 1.17014 0.81262 0.87780 0.94357 0.96910 1.58946 1.36243 1.34888 1.04094 1.21084 1.19426 1.25250 0.91972 0.94216 1.25632 0.95493 0.95633 0.99937 1.70220 1.21340 1.28058 1.31864 0.85698 0.77870 0.77936 0.81123 1.19893 1.20467 1.20593 0.91331 0.84854 0.90780 0.77182 0.86063 0.87419 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 10.80 113.37 1.22 1.45 15 2 O -0.27 -9.99 10.55 -65.22 -0.69 -10.68 15 3 C 0.14 5.64 8.01 67.39 0.54 6.18 15 4 O 0.06 2.03 10.76 92.43 0.99 3.02 15 5 N -0.38 -14.14 12.06 -58.76 -0.71 -14.84 15 6 C 0.03 1.00 11.49 85.59 0.98 1.98 15 7 C -0.24 -10.48 5.34 -19.63 -0.10 -10.59 15 8 C 0.31 15.52 3.13 43.42 0.14 15.65 15 9 H 0.01 0.75 8.14 -2.39 -0.02 0.73 15 10 N -0.81 -37.49 8.34 -174.95 -1.46 -38.95 15 11 C -0.54 -30.05 8.71 25.60 0.22 -29.82 15 12 H 0.04 2.25 7.74 -2.91 -0.02 2.23 15 13 C 0.04 2.05 5.39 84.65 0.46 2.51 15 14 N -0.88 -51.40 12.77 21.45 0.27 -51.13 15 15 Si 0.95 44.02 29.54 68.60 2.03 46.05 15 16 H -0.27 -12.56 7.11 99.48 0.71 -11.86 15 17 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 15 19 H 0.07 1.44 8.14 -2.39 -0.02 1.42 15 20 H 0.13 2.29 8.14 -2.39 -0.02 2.27 15 21 H 0.07 1.46 8.14 -2.39 -0.02 1.44 15 22 H 0.21 6.44 7.69 -2.91 -0.02 6.42 15 23 H 0.33 13.88 8.28 -89.70 -0.74 13.14 15 24 H 0.31 12.76 9.06 -89.69 -0.81 11.95 15 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 15 Total: -1.00 -65.48 231.88 3.57 -61.91 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -0.33 Total: 17.26 kcal Atomic # 6 Polarization: -16.10 SS G_CDS: 3.46 Total: -12.64 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -1.89 Total: -104.93 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.31 Total: -7.66 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -65.48 3.57 -61.91 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261277000.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.333 kcal (2) G-P(sol) polarization free energy of solvation -65.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds