Wall clock time and date at job start Mon Mar 30 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42947 * 109.41384 * 300.13982 * 9 7 2 11 11 C 1.43306 * 113.67459 * 179.18080 * 10 9 7 12 12 C 1.52866 * 108.53777 * 55.73658 * 11 10 9 13 13 C 1.53296 * 113.64277 * 80.32874 * 12 11 10 14 14 C 1.53863 * 86.93469 * 89.70897 * 13 12 11 15 15 C 1.53264 * 113.69477 * 178.48461 * 12 11 10 16 16 C 1.52874 * 112.42255 * 309.47407 * 12 11 10 17 17 O 1.42945 * 109.40951 * 179.85977 * 9 7 2 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.41710 * 60.00045 * 9 7 2 20 20 H 1.09005 * 109.67184 * 296.00537 * 11 10 9 21 21 H 1.08992 * 109.60788 * 175.43302 * 11 10 9 22 22 H 1.09005 * 113.63664 * 204.22586 * 13 12 11 23 23 H 1.09007 * 113.63567 * 335.19847 * 13 12 11 24 24 H 1.08996 * 113.60210 * 270.49492 * 14 13 12 25 25 H 1.09001 * 113.60124 * 139.62866 * 14 13 12 26 26 H 1.09004 * 113.63407 * 24.84688 * 15 12 11 27 27 H 1.09003 * 113.64002 * 155.73468 * 15 12 11 28 28 H 1.08999 * 109.61536 * 290.75849 * 16 12 11 29 29 H 1.09005 * 109.61875 * 170.22444 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4268 -2.5719 1.1662 11 6 -0.3480 -3.7746 1.2488 12 6 0.6007 -4.9705 1.1679 13 6 1.2966 -5.2940 2.4949 14 6 0.1010 -6.2121 2.8031 15 6 -0.1056 -6.3258 1.2825 16 6 1.5589 -4.8754 -0.0195 17 8 2.1812 -3.5846 -0.0022 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6251 -2.5562 -0.8899 20 1 -1.0561 -3.8125 0.4209 21 1 -0.8867 -3.7982 2.1960 22 1 2.2389 -5.8287 2.3752 23 1 1.3758 -4.4392 3.1666 24 1 -0.7160 -5.7066 3.3179 25 1 0.3834 -7.1524 3.2766 26 1 -1.1527 -6.2999 0.9806 27 1 0.4469 -7.1467 0.8252 28 1 1.0035 -5.0015 -0.9489 29 1 2.3211 -5.6503 0.0623 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261286503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:20 Heat of formation + Delta-G solvation = -83.670862 kcal Electronic energy + Delta-G solvation = -13315.879217 eV Core-core repulsion = 11011.349824 eV Total energy + Delta-G solvation = -2304.529393 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.97725 -36.92687 -34.52307 -32.71889 -28.91286 -25.99588 -25.51695 -25.34323 -22.59882 -21.40850 -18.24697 -17.27852 -16.37044 -15.30855 -15.17108 -14.81842 -13.92497 -13.69785 -13.36353 -12.89688 -12.51715 -12.27711 -11.90684 -11.26272 -11.15776 -10.84531 -10.76675 -10.21031 -10.09546 -10.04772 -9.90974 -8.90911 -8.89110 -8.68739 -8.25781 -6.48702 -4.25731 3.43428 3.47238 3.63597 4.40096 4.68244 4.79138 4.84442 4.86656 5.02691 5.13628 5.46211 5.60182 5.66061 5.78357 5.86399 5.88343 5.95811 6.01902 6.20455 6.30316 6.37565 6.55612 6.59083 6.63461 7.69344 8.10074 8.40809 8.62873 8.77028 9.55297 10.92771 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.070323 B = 0.010131 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.067354 B = 2763.046888 C = 2873.979676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.033 3.967 3 Si 1.083 2.917 4 H -0.284 1.284 5 H -0.285 1.285 6 H -0.282 1.282 7 C -0.592 4.592 8 H 0.068 0.932 9 C 0.353 3.647 10 O -0.381 6.381 11 C 0.075 3.925 12 C -0.151 4.151 13 C -0.116 4.116 14 C -0.141 4.141 15 C -0.129 4.129 16 C 0.073 3.927 17 O -0.391 6.391 18 H 0.277 0.723 19 H 0.005 0.995 20 H 0.038 0.962 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.038 0.962 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 -10.107 2.376 10.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.175 4.175 3 Si 0.910 3.090 4 H -0.211 1.211 5 H -0.211 1.211 6 H -0.208 1.208 7 C -0.629 4.629 8 H 0.087 0.913 9 C 0.262 3.738 10 O -0.302 6.302 11 C -0.003 4.003 12 C -0.152 4.152 13 C -0.154 4.154 14 C -0.178 4.178 15 C -0.166 4.166 16 C -0.004 4.004 17 O -0.312 6.312 18 H 0.089 0.911 19 H 0.022 0.978 20 H 0.057 0.943 21 H 0.098 0.902 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.098 0.902 28 H 0.057 0.943 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.493 -8.289 2.500 8.672 hybrid contribution -0.210 -2.177 -0.145 2.192 sum -0.703 -10.466 2.356 10.751 Atomic orbital electron populations 1.70652 1.06911 1.31653 1.43012 1.26007 0.96445 1.02682 0.92352 0.83358 0.74564 0.74028 0.77041 1.21066 1.21117 1.20755 1.21710 0.94962 0.88728 1.57489 0.91342 1.21321 0.82828 0.86004 0.83652 1.88622 1.57347 1.35711 1.48531 1.22168 0.92250 0.85183 1.00656 1.22796 0.98463 0.96272 0.97626 1.22727 0.96795 0.99302 0.96560 1.22860 0.99161 0.99712 0.96076 1.22803 1.00386 0.96682 0.96766 1.22396 0.95166 0.87850 0.95020 1.88183 1.35542 1.13491 1.94000 0.91134 0.97805 0.94348 0.90243 0.90437 0.90938 0.90325 0.91812 0.91592 0.90203 0.94334 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.41 13.52 55.43 0.75 -26.66 15 2 C 0.03 0.97 5.40 -17.82 -0.10 0.88 15 3 Si 1.08 25.54 29.90 -169.99 -5.08 20.46 15 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 5 H -0.29 -6.37 7.11 56.52 0.40 -5.96 15 6 H -0.28 -6.49 7.11 56.52 0.40 -6.08 15 7 C -0.59 -17.91 9.11 -34.44 -0.31 -18.23 15 8 H 0.07 2.07 7.81 -52.49 -0.41 1.66 15 9 C 0.35 9.89 2.63 36.01 0.09 9.99 15 10 O -0.38 -10.28 9.21 -59.00 -0.54 -10.82 15 11 C 0.08 1.56 6.05 37.09 0.22 1.78 15 12 C -0.15 -2.70 0.99 -154.35 -0.15 -2.85 15 13 C -0.12 -1.91 7.21 -26.13 -0.19 -2.10 15 14 C -0.14 -1.85 7.74 -25.83 -0.20 -2.05 15 15 C -0.13 -1.76 7.24 -26.14 -0.19 -1.95 15 16 C 0.07 1.43 6.16 37.09 0.23 1.66 15 17 O -0.39 -10.02 10.54 -59.00 -0.62 -10.64 15 18 H 0.28 8.62 6.46 -40.82 -0.26 8.35 15 19 H 0.01 0.14 8.01 -51.93 -0.42 -0.27 15 20 H 0.04 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.08 1.49 7.38 -51.93 -0.38 1.11 15 22 H 0.08 1.19 7.99 -51.93 -0.41 0.77 15 23 H 0.07 1.32 8.09 -51.93 -0.42 0.90 15 24 H 0.08 1.01 7.68 -51.93 -0.40 0.61 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.29 15 26 H 0.07 0.85 8.09 -51.93 -0.42 0.43 15 27 H 0.08 0.97 8.10 -51.93 -0.42 0.55 15 28 H 0.04 0.72 8.14 -51.93 -0.42 0.30 15 29 H 0.08 1.38 7.98 -51.93 -0.41 0.96 15 LS Contribution 239.06 15.07 3.60 3.60 Total: -1.00 -32.54 239.06 -6.52 -39.05 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -4.03 Total: -2.12 kcal Atomic # 6 Polarization: -12.27 SS G_CDS: -0.59 Total: -12.87 kcal Atomic # 7 Polarization: -27.41 SS G_CDS: 0.75 Total: -26.66 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -1.17 Total: -21.47 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.08 Total: 20.46 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -32.54 -6.52 -39.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.620 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds