Wall clock time and date at job start Mon Mar 30 2020 02:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48500 * 109.46986 * 90.00007 * 3 2 1 5 5 H 1.48496 * 109.47029 * 210.00024 * 3 2 1 6 6 H 1.48499 * 109.47352 * 329.99854 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 O 1.42947 * 109.41384 * 300.13982 * 9 7 2 11 11 C 1.43306 * 113.67459 * 179.18080 * 10 9 7 12 12 C 1.52866 * 108.53777 * 55.73658 * 11 10 9 13 13 C 1.53296 * 113.64277 * 80.32874 * 12 11 10 14 14 C 1.53863 * 86.93469 * 89.70897 * 13 12 11 15 15 C 1.53264 * 113.69477 * 178.48461 * 12 11 10 16 16 C 1.52874 * 112.42255 * 309.47407 * 12 11 10 17 17 O 1.42945 * 109.40951 * 179.85977 * 9 7 2 18 18 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 19 19 H 1.08995 * 109.41710 * 60.00045 * 9 7 2 20 20 H 1.09005 * 109.67184 * 296.00537 * 11 10 9 21 21 H 1.08992 * 109.60788 * 175.43302 * 11 10 9 22 22 H 1.09005 * 113.63664 * 204.22586 * 13 12 11 23 23 H 1.09007 * 113.63567 * 335.19847 * 13 12 11 24 24 H 1.08996 * 113.60210 * 270.49492 * 14 13 12 25 25 H 1.09001 * 113.60124 * 139.62866 * 14 13 12 26 26 H 1.09004 * 113.63407 * 24.84688 * 15 12 11 27 27 H 1.09003 * 113.64002 * 155.73468 * 15 12 11 28 28 H 1.08999 * 109.61536 * 290.75849 * 16 12 11 29 29 H 1.09005 * 109.61875 * 170.22444 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4465 2.6527 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 0.4268 -2.5719 1.1662 11 6 -0.3480 -3.7746 1.2488 12 6 0.6007 -4.9705 1.1679 13 6 1.2966 -5.2940 2.4949 14 6 0.1010 -6.2121 2.8031 15 6 -0.1056 -6.3258 1.2825 16 6 1.5589 -4.8754 -0.0195 17 8 2.1812 -3.5846 -0.0022 18 1 -0.4850 -0.8401 -0.0004 19 1 0.6251 -2.5562 -0.8899 20 1 -1.0561 -3.8125 0.4209 21 1 -0.8867 -3.7982 2.1960 22 1 2.2389 -5.8287 2.3752 23 1 1.3758 -4.4392 3.1666 24 1 -0.7160 -5.7066 3.3179 25 1 0.3834 -7.1524 3.2766 26 1 -1.1527 -6.2999 0.9806 27 1 0.4469 -7.1467 0.8252 28 1 1.0035 -5.0015 -0.9489 29 1 2.3211 -5.6503 0.0623 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261286503.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:20 Heat of formation + Delta-G solvation = -105.612055 kcal Electronic energy + Delta-G solvation = -13316.830659 eV Core-core repulsion = 11011.349824 eV Total energy + Delta-G solvation = -2305.480835 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.52124 -38.61477 -36.47757 -34.91909 -30.54508 -27.99816 -27.18158 -26.61745 -24.61368 -22.87787 -19.85644 -19.28106 -18.25639 -16.90042 -16.77452 -16.55763 -15.74852 -15.42678 -14.91280 -14.54402 -14.28591 -14.03922 -13.36473 -13.22151 -12.67132 -12.46687 -12.14312 -11.95255 -11.87760 -11.51853 -11.25616 -10.87858 -10.77290 -10.62522 -10.31505 -8.84361 -6.63599 1.52726 1.62509 1.82795 2.47035 2.85166 3.03594 3.34343 3.48388 3.53310 3.70165 3.86664 4.02734 4.20467 4.32391 4.43212 4.50877 4.67733 4.72889 4.78689 4.84836 5.02554 5.10768 5.30067 5.45102 5.54352 5.86648 6.22411 6.48640 6.59601 7.28516 8.57296 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.070323 B = 0.010131 C = 0.009740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.067354 B = 2763.046888 C = 2873.979676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.012 4.012 3 Si 1.133 2.867 4 H -0.271 1.271 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.624 4.624 8 H 0.059 0.941 9 C 0.362 3.638 10 O -0.412 6.412 11 C 0.065 3.935 12 C -0.163 4.163 13 C -0.123 4.123 14 C -0.125 4.125 15 C -0.111 4.111 16 C 0.061 3.939 17 O -0.416 6.416 18 H 0.264 0.736 19 H -0.019 1.019 20 H 0.039 0.961 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.043 0.957 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.076 0.924 27 H 0.104 0.896 28 H 0.044 0.956 29 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -11.431 2.936 11.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.213 4.213 3 Si 0.951 3.049 4 H -0.196 1.196 5 H -0.192 1.192 6 H -0.197 1.197 7 C -0.661 4.661 8 H 0.077 0.923 9 C 0.270 3.730 10 O -0.334 6.334 11 C -0.012 4.012 12 C -0.164 4.164 13 C -0.160 4.160 14 C -0.162 4.162 15 C -0.148 4.148 16 C -0.015 4.015 17 O -0.337 6.337 18 H 0.074 0.926 19 H -0.002 1.002 20 H 0.057 0.943 21 H 0.116 0.884 22 H 0.108 0.892 23 H 0.061 0.939 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.062 0.938 29 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.336 -9.660 3.063 10.140 hybrid contribution -0.286 -1.898 -0.316 1.945 sum -0.622 -11.558 2.748 11.897 Atomic orbital electron populations 1.70778 1.07775 1.30802 1.44825 1.27678 0.96501 1.06472 0.90696 0.82782 0.74121 0.69883 0.78098 1.19591 1.19155 1.19652 1.22078 0.94894 0.90678 1.58412 0.92316 1.20830 0.82704 0.86356 0.83087 1.88485 1.58116 1.39056 1.47707 1.22488 0.92590 0.84514 1.01606 1.22827 0.98444 0.97454 0.97654 1.22803 0.98824 0.99325 0.95084 1.22805 0.97277 1.00045 0.96063 1.22789 1.00812 0.94062 0.97134 1.22834 0.96633 0.85740 0.96327 1.88103 1.36052 1.15370 1.94195 0.92634 1.00215 0.94292 0.88434 0.89195 0.93850 0.90161 0.88883 0.90492 0.87766 0.93801 0.86894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.24 13.52 21.45 0.29 -56.95 15 2 C -0.01 -0.71 5.40 84.65 0.46 -0.25 15 3 Si 1.13 51.30 29.90 68.60 2.05 53.35 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 5 H -0.27 -11.18 7.11 99.48 0.71 -10.47 15 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 7 C -0.62 -38.87 9.11 25.60 0.23 -38.63 15 8 H 0.06 3.65 7.81 -2.91 -0.02 3.63 15 9 C 0.36 20.99 2.63 71.24 0.19 21.18 15 10 O -0.41 -22.87 9.21 -126.25 -1.16 -24.04 15 11 C 0.06 2.68 6.05 71.94 0.43 3.11 15 12 C -0.16 -5.58 0.99 -52.08 -0.05 -5.63 15 13 C -0.12 -3.79 7.21 30.98 0.22 -3.57 15 14 C -0.12 -2.82 7.74 31.18 0.24 -2.58 15 15 C -0.11 -2.59 7.24 30.98 0.22 -2.37 15 16 C 0.06 2.32 6.16 71.94 0.44 2.76 15 17 O -0.42 -21.64 10.54 -126.25 -1.33 -22.97 15 18 H 0.26 16.98 6.46 -92.70 -0.60 16.38 15 19 H -0.02 -1.14 8.01 -2.39 -0.02 -1.16 15 20 H 0.04 1.58 8.14 -2.38 -0.02 1.56 15 21 H 0.10 3.61 7.38 -2.39 -0.02 3.59 15 22 H 0.09 2.52 7.99 -2.38 -0.02 2.50 15 23 H 0.04 1.57 8.09 -2.38 -0.02 1.55 15 24 H 0.08 1.80 7.68 -2.39 -0.02 1.78 15 25 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 26 H 0.08 1.68 8.09 -2.38 -0.02 1.66 15 27 H 0.10 2.00 8.10 -2.39 -0.02 1.98 15 28 H 0.04 1.60 8.14 -2.39 -0.02 1.58 15 29 H 0.11 3.54 7.98 -2.38 -0.02 3.52 15 Total: -1.00 -72.36 239.06 3.53 -68.83 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: 1.29 Total: 7.76 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 2.39 Total: -25.98 kcal Atomic # 7 Polarization: -57.24 SS G_CDS: 0.29 Total: -56.95 kcal Atomic # 8 Polarization: -44.51 SS G_CDS: -2.49 Total: -47.01 kcal Atomic # 14 Polarization: 51.30 SS G_CDS: 2.05 Total: 53.35 kcal Total: -72.36 3.53 -68.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261286503.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.787 kcal (2) G-P(sol) polarization free energy of solvation -72.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds