Wall clock time and date at job start Mon Mar 30 2020 02:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99543 * 2 1 4 4 H 1.48504 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46799 * 299.99313 * 3 2 1 6 6 H 1.48497 * 109.47472 * 59.99669 * 3 2 1 7 7 C 1.37874 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00327 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.35348 * 59.72241 * 9 7 2 11 11 C 1.50069 * 109.35795 * 300.00259 * 9 7 2 12 12 C 1.29447 * 124.07158 * 222.80045 * 11 9 7 13 13 C 1.50069 * 124.07732 * 0.43681 * 12 11 9 14 14 H 1.08994 * 109.36169 * 222.82320 * 13 12 11 15 15 O 1.42903 * 109.35063 * 103.10480 * 13 12 11 16 16 C 1.53016 * 110.14790 * 342.89937 * 13 12 11 17 17 C 1.53018 * 109.24837 * 179.37641 * 9 7 2 18 18 H 1.09003 * 109.64323 * 49.68301 * 17 9 7 19 19 C 1.52997 * 109.64782 * 289.25977 * 17 9 7 20 20 O 1.42894 * 109.47691 * 174.99719 * 19 17 9 21 21 H 0.97001 * 120.00672 * 0.02562 * 1 2 3 22 22 H 1.07993 * 117.96789 * 42.81632 * 11 9 7 23 23 H 1.08004 * 117.95820 * 180.46886 * 12 11 9 24 24 H 0.96700 * 114.00311 * 60.00287 * 15 13 12 25 25 H 1.09008 * 109.64470 * 169.11598 * 16 13 12 26 26 H 1.08992 * 109.64331 * 289.74582 * 16 13 12 27 27 H 1.09001 * 109.47303 * 295.00111 * 19 17 9 28 28 H 1.09001 * 109.46835 * 54.99615 * 19 17 9 29 29 H 0.96703 * 114.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6218 -2.5529 -0.8878 11 6 0.3888 -2.5757 1.2263 12 6 0.2603 -3.6361 1.9575 13 6 0.9630 -4.9343 1.6869 14 1 0.2659 -5.7595 1.8320 15 8 2.0600 -5.0764 2.5916 16 6 1.4847 -4.9614 0.2487 17 6 2.2500 -3.6582 -0.0145 18 1 2.9994 -3.5062 0.7623 19 6 2.9336 -3.7305 -1.3814 20 8 3.9470 -4.7375 -1.3547 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1588 -1.6912 1.5164 23 1 -0.3937 -3.5835 2.8154 24 1 1.8034 -5.0786 3.5239 25 1 2.1535 -5.8121 0.1175 26 1 0.6466 -5.0402 -0.4436 27 1 2.1954 -3.9780 -2.1442 28 1 3.3858 -2.7661 -1.6129 29 1 4.4233 -4.8386 -2.1902 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306506835.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:29 Heat of formation + Delta-G solvation = -98.617177 kcal Electronic energy + Delta-G solvation = -13059.154848 eV Core-core repulsion = 10753.977334 eV Total energy + Delta-G solvation = -2305.177514 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.51872 -36.15312 -34.78709 -32.41281 -30.65052 -28.89965 -25.56068 -23.84110 -21.43881 -19.99255 -17.95041 -16.69011 -16.55413 -15.35163 -15.21325 -14.50229 -14.00948 -13.39234 -12.88726 -12.52968 -12.22502 -11.85823 -11.59572 -11.25741 -10.99057 -10.80975 -10.54259 -10.13853 -9.83978 -9.54285 -9.32721 -9.02242 -8.80603 -8.48732 -7.91542 -6.10281 -4.15699 3.24558 3.33603 3.37727 3.47468 4.37639 4.93133 5.07167 5.24025 5.59204 5.68531 5.86457 6.04072 6.14207 6.31982 6.41795 6.58899 6.62805 6.75696 6.91605 7.04048 7.41584 7.71011 7.84865 7.90760 7.98472 8.21903 8.27327 8.37855 8.90280 9.48940 10.96593 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.013175 C = 0.010640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.032584 B = 2124.783587 C = 2630.995713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.066 3.934 10 H 0.043 0.957 11 C -0.034 4.034 12 C -0.292 4.292 13 C 0.151 3.849 14 H 0.039 0.961 15 O -0.564 6.564 16 C -0.104 4.104 17 C -0.071 4.071 18 H 0.075 0.925 19 C 0.084 3.916 20 O -0.579 6.579 21 H 0.261 0.739 22 H 0.117 0.883 23 H 0.082 0.918 24 H 0.366 0.634 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.034 0.966 28 H 0.056 0.944 29 H 0.366 0.634 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.589 -6.394 -0.164 6.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.048 3.952 10 H 0.060 0.940 11 C -0.052 4.052 12 C -0.311 4.311 13 C 0.093 3.907 14 H 0.057 0.943 15 O -0.369 6.369 16 C -0.142 4.142 17 C -0.089 4.089 18 H 0.094 0.906 19 C 0.007 3.993 20 O -0.383 6.383 21 H 0.071 0.929 22 H 0.135 0.865 23 H 0.100 0.900 24 H 0.211 0.789 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 1.548 -6.338 -0.112 6.526 hybrid contribution 0.040 1.194 0.062 1.196 sum 1.589 -5.145 -0.050 5.385 Atomic orbital electron populations 1.69938 1.05921 1.26671 1.50465 1.25018 0.94916 0.99285 0.94926 0.86516 0.80258 0.83567 0.77624 1.19644 1.20956 1.20968 1.21196 0.93090 0.89816 1.50461 0.92029 1.17814 0.91990 0.92286 0.93118 0.93958 1.22817 0.91781 0.95811 0.94821 1.22277 1.07653 0.96961 1.04207 1.20398 0.86423 0.93834 0.90080 0.94290 1.86572 1.35167 1.96418 1.18753 1.21636 0.99643 0.99215 0.93687 1.21200 0.97719 0.94628 0.95369 0.90612 1.22299 0.88892 0.89980 0.98090 1.86507 1.53086 1.60006 1.38750 0.92874 0.86539 0.90031 0.78853 0.91701 0.91670 0.94738 0.92612 0.78970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 11.55 55.43 0.64 -24.15 15 2 C 0.06 1.62 5.26 -17.82 -0.09 1.53 15 3 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 15 4 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 15 7 C -0.51 -13.65 7.80 -34.44 -0.27 -13.92 15 8 H 0.06 1.66 7.48 -52.48 -0.39 1.27 15 9 C 0.07 1.63 1.82 -93.22 -0.17 1.46 15 10 H 0.04 1.12 8.10 -51.93 -0.42 0.70 15 11 C -0.03 -0.81 8.57 -35.90 -0.31 -1.12 15 12 C -0.29 -6.18 9.39 -35.90 -0.34 -6.51 15 13 C 0.15 2.90 3.78 -28.18 -0.11 2.80 15 14 H 0.04 0.67 8.14 -51.93 -0.42 0.24 15 15 O -0.56 -10.74 12.90 -35.23 -0.45 -11.19 15 16 C -0.10 -2.08 4.95 -26.51 -0.13 -2.21 15 17 C -0.07 -1.57 1.82 -90.40 -0.16 -1.73 15 18 H 0.08 1.88 7.76 -51.93 -0.40 1.47 15 19 C 0.08 1.66 6.34 37.16 0.24 1.89 15 20 O -0.58 -10.40 13.16 -35.23 -0.46 -10.86 15 21 H 0.26 6.93 8.31 -40.82 -0.34 6.59 15 22 H 0.12 3.08 6.47 -52.49 -0.34 2.74 15 23 H 0.08 1.57 8.06 -52.48 -0.42 1.15 15 24 H 0.37 5.26 9.07 45.56 0.41 5.67 15 25 H 0.06 1.28 7.72 -51.92 -0.40 0.87 15 26 H 0.06 1.23 8.12 -51.93 -0.42 0.81 15 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 15 28 H 0.06 1.13 7.27 -51.93 -0.38 0.76 15 29 H 0.37 4.54 9.12 45.56 0.42 4.96 15 LS Contribution 241.96 15.07 3.65 3.65 Total: -1.00 -30.05 241.96 -5.33 -35.37 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.33 Total: 9.09 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: -1.34 Total: -17.81 kcal Atomic # 7 Polarization: -24.79 SS G_CDS: 0.64 Total: -24.15 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.92 Total: -22.05 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -30.05 -5.33 -35.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306506835.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.243 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds