Wall clock time and date at job start Mon Mar 30 2020 02:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 119.99543 * 2 1 4 4 H 1.48504 * 109.46909 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46799 * 299.99313 * 3 2 1 6 6 H 1.48497 * 109.47472 * 59.99669 * 3 2 1 7 7 C 1.37874 * 120.00086 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99866 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00327 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.35348 * 59.72241 * 9 7 2 11 11 C 1.50069 * 109.35795 * 300.00259 * 9 7 2 12 12 C 1.29447 * 124.07158 * 222.80045 * 11 9 7 13 13 C 1.50069 * 124.07732 * 0.43681 * 12 11 9 14 14 H 1.08994 * 109.36169 * 222.82320 * 13 12 11 15 15 O 1.42903 * 109.35063 * 103.10480 * 13 12 11 16 16 C 1.53016 * 110.14790 * 342.89937 * 13 12 11 17 17 C 1.53018 * 109.24837 * 179.37641 * 9 7 2 18 18 H 1.09003 * 109.64323 * 49.68301 * 17 9 7 19 19 C 1.52997 * 109.64782 * 289.25977 * 17 9 7 20 20 O 1.42894 * 109.47691 * 174.99719 * 19 17 9 21 21 H 0.97001 * 120.00672 * 0.02562 * 1 2 3 22 22 H 1.07993 * 117.96789 * 42.81632 * 11 9 7 23 23 H 1.08004 * 117.95820 * 180.46886 * 12 11 9 24 24 H 0.96700 * 114.00311 * 60.00287 * 15 13 12 25 25 H 1.09008 * 109.64470 * 169.11598 * 16 13 12 26 26 H 1.08992 * 109.64331 * 289.74582 * 16 13 12 27 27 H 1.09001 * 109.47303 * 295.00111 * 19 17 9 28 28 H 1.09001 * 109.46835 * 54.99615 * 19 17 9 29 29 H 0.96703 * 114.00351 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6218 -2.5529 -0.8878 11 6 0.3888 -2.5757 1.2263 12 6 0.2603 -3.6361 1.9575 13 6 0.9630 -4.9343 1.6869 14 1 0.2659 -5.7595 1.8320 15 8 2.0600 -5.0764 2.5916 16 6 1.4847 -4.9614 0.2487 17 6 2.2500 -3.6582 -0.0145 18 1 2.9994 -3.5062 0.7623 19 6 2.9336 -3.7305 -1.3814 20 8 3.9470 -4.7375 -1.3547 21 1 -0.4851 0.8400 -0.0004 22 1 -0.1588 -1.6912 1.5164 23 1 -0.3937 -3.5835 2.8154 24 1 1.8034 -5.0786 3.5239 25 1 2.1535 -5.8121 0.1175 26 1 0.6466 -5.0402 -0.4436 27 1 2.1954 -3.9780 -2.1442 28 1 3.3858 -2.7661 -1.6129 29 1 4.4233 -4.8386 -2.1902 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306506835.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:28 Heat of formation + Delta-G solvation = -122.258329 kcal Electronic energy + Delta-G solvation = -13060.180005 eV Core-core repulsion = 10753.977334 eV Total energy + Delta-G solvation = -2306.202671 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.17546 -37.63054 -36.44572 -34.34582 -32.34729 -30.66638 -27.36495 -25.61200 -23.18458 -21.69977 -19.55535 -18.62146 -18.11033 -16.98272 -16.91402 -16.37031 -15.64105 -15.06992 -14.44238 -14.22125 -14.00528 -13.54807 -13.40813 -12.99061 -12.75554 -12.50671 -12.32553 -12.07403 -11.62564 -11.17503 -10.96506 -10.71258 -10.58537 -10.39245 -9.72291 -8.15244 -6.27295 1.37863 1.41186 1.52052 1.68298 2.41380 3.14222 3.52602 3.65806 4.00912 4.12103 4.22176 4.48204 4.55634 4.71513 4.74636 4.96418 5.02788 5.14679 5.15803 5.27047 5.52966 5.81882 5.84074 6.07612 6.12144 6.40711 6.87373 7.01728 7.02281 7.40022 8.90774 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033604 B = 0.013175 C = 0.010640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 833.032584 B = 2124.783587 C = 2630.995713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.069 3.931 10 H 0.018 0.982 11 C -0.074 4.074 12 C -0.261 4.261 13 C 0.149 3.851 14 H 0.076 0.924 15 O -0.578 6.578 16 C -0.103 4.103 17 C -0.067 4.067 18 H 0.045 0.955 19 C 0.093 3.907 20 O -0.587 6.587 21 H 0.263 0.737 22 H 0.087 0.913 23 H 0.103 0.897 24 H 0.387 0.613 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.041 0.959 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -7.427 0.098 7.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.051 3.949 10 H 0.036 0.964 11 C -0.093 4.093 12 C -0.280 4.280 13 C 0.091 3.909 14 H 0.094 0.906 15 O -0.386 6.386 16 C -0.140 4.140 17 C -0.085 4.085 18 H 0.064 0.936 19 C 0.015 3.985 20 O -0.395 6.395 21 H 0.072 0.928 22 H 0.105 0.895 23 H 0.121 0.879 24 H 0.236 0.764 25 H 0.090 0.910 26 H 0.094 0.906 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 1.877 -7.385 0.148 7.621 hybrid contribution -0.045 1.443 0.025 1.444 sum 1.832 -5.942 0.173 6.220 Atomic orbital electron populations 1.70051 1.07053 1.27351 1.51045 1.25719 0.95695 1.02290 0.94689 0.85586 0.79058 0.79815 0.77729 1.19406 1.20233 1.20720 1.21441 0.92830 0.91380 1.50518 0.92999 1.17675 0.92121 0.92620 0.92458 0.96407 1.22579 0.94019 0.96278 0.96434 1.22622 1.05662 0.96704 1.02969 1.20474 0.86943 0.93627 0.89820 0.90642 1.86541 1.35294 1.96289 1.20441 1.21640 0.99827 0.97804 0.94742 1.21034 0.96699 0.94979 0.95824 0.93649 1.22050 0.89490 0.89915 0.97018 1.86434 1.52928 1.59064 1.41051 0.92823 0.89485 0.87885 0.76449 0.91030 0.90632 0.93266 0.94049 0.76007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.01 11.55 21.45 0.25 -51.76 15 2 C 0.02 0.83 5.26 84.65 0.45 1.27 15 3 Si 0.95 43.38 29.54 68.60 2.03 45.41 15 4 H -0.27 -12.06 7.11 99.48 0.71 -11.36 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.28 -12.63 7.11 99.48 0.71 -11.92 15 7 C -0.52 -28.81 7.80 25.60 0.20 -28.61 15 8 H 0.05 2.87 7.48 -2.91 -0.02 2.85 15 9 C 0.07 3.50 1.82 -12.48 -0.02 3.48 15 10 H 0.02 0.98 8.10 -2.39 -0.02 0.96 15 11 C -0.07 -3.63 8.57 27.03 0.23 -3.40 15 12 C -0.26 -10.58 9.39 27.03 0.25 -10.33 15 13 C 0.15 5.31 3.78 29.66 0.11 5.43 15 14 H 0.08 2.22 8.14 -2.39 -0.02 2.20 15 15 O -0.58 -20.35 12.90 -148.98 -1.92 -22.27 15 16 C -0.10 -3.89 4.95 30.74 0.15 -3.74 15 17 C -0.07 -2.94 1.82 -10.65 -0.02 -2.96 15 18 H 0.04 2.25 7.76 -2.39 -0.02 2.24 15 19 C 0.09 3.58 6.34 71.98 0.46 4.04 15 20 O -0.59 -19.98 13.16 -148.98 -1.96 -21.94 15 21 H 0.26 14.14 8.31 -92.71 -0.77 13.37 15 22 H 0.09 4.74 6.47 -2.91 -0.02 4.72 15 23 H 0.10 3.70 8.06 -2.91 -0.02 3.68 15 24 H 0.39 9.84 9.07 -74.06 -0.67 9.17 15 25 H 0.07 2.62 7.72 -2.38 -0.02 2.60 15 26 H 0.08 2.68 8.12 -2.39 -0.02 2.67 15 27 H 0.05 1.74 8.14 -2.39 -0.02 1.73 15 28 H 0.04 1.69 7.27 -2.39 -0.02 1.67 15 29 H 0.39 8.78 9.12 -74.06 -0.68 8.11 15 Total: -1.00 -64.24 241.96 0.01 -64.23 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.19 Total: 21.16 kcal Atomic # 6 Polarization: -36.63 SS G_CDS: 1.81 Total: -34.82 kcal Atomic # 7 Polarization: -52.01 SS G_CDS: 0.25 Total: -51.76 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -3.88 Total: -44.21 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -64.24 0.01 -64.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306506835.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.025 kcal (2) G-P(sol) polarization free energy of solvation -64.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds