Wall clock time and date at job start Mon Mar 30 2020 02:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99829 * 2 1 4 4 H 1.48495 * 109.46994 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47736 * 300.00717 * 3 2 1 6 6 H 1.48500 * 109.46737 * 60.00823 * 3 2 1 7 7 C 1.37872 * 120.00146 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00136 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99925 * 359.97438 * 7 2 1 10 10 H 1.09005 * 109.24322 * 60.34898 * 9 7 2 11 11 C 1.50061 * 109.36101 * 300.69418 * 9 7 2 12 12 C 1.29442 * 124.07679 * 256.92617 * 11 9 7 13 13 C 1.50076 * 124.07222 * 359.50292 * 12 11 9 14 14 H 1.09006 * 109.35763 * 137.36400 * 13 12 11 15 15 O 1.42900 * 109.36030 * 257.08522 * 13 12 11 16 16 C 1.53040 * 110.14160 * 17.17261 * 13 12 11 17 17 C 1.53022 * 109.35819 * 180.02562 * 9 7 2 18 18 H 1.09001 * 109.64481 * 190.66976 * 17 9 7 19 19 C 1.52999 * 109.64264 * 311.09016 * 17 9 7 20 20 O 1.42903 * 109.47256 * 185.00184 * 19 17 9 21 21 H 0.97006 * 119.99985 * 359.97438 * 1 2 3 22 22 H 1.08000 * 117.96476 * 76.93811 * 11 9 7 23 23 H 1.08001 * 117.96728 * 179.52444 * 12 11 9 24 24 H 0.96705 * 113.99493 * 300.00440 * 15 13 12 25 25 H 1.08993 * 109.63820 * 190.86249 * 16 13 12 26 26 H 1.08996 * 109.65855 * 70.21464 * 16 13 12 27 27 H 1.08997 * 109.47286 * 64.99744 * 19 17 9 28 28 H 1.09008 * 109.47201 * 304.99525 * 19 17 9 29 29 H 0.96700 * 114.00311 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2123 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6301 -2.5555 -0.8947 11 6 0.3769 -2.5689 1.2172 12 6 0.6535 -3.2704 2.2693 13 6 1.8818 -4.1205 2.4140 14 1 2.2970 -3.9882 3.4132 15 8 1.5330 -5.4932 2.2240 16 6 2.9279 -3.7165 1.3726 17 6 2.2477 -3.6602 -0.0005 18 1 1.7209 -4.5954 -0.1906 19 6 3.3013 -3.4336 -1.0865 20 8 4.1605 -4.5730 -1.1619 21 1 -0.4850 0.8401 0.0004 22 1 -0.5402 -1.9985 1.2157 23 1 -0.0432 -3.2426 3.0941 24 1 0.8797 -5.8240 2.8556 25 1 3.7302 -4.4540 1.3542 26 1 3.3331 -2.7357 1.6212 27 1 3.8905 -2.5497 -0.8424 28 1 2.8073 -3.2871 -2.0471 29 1 4.8547 -4.4987 -1.8309 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306506836.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:31 Heat of formation + Delta-G solvation = -96.339702 kcal Electronic energy + Delta-G solvation = -13160.451929 eV Core-core repulsion = 10855.373174 eV Total energy + Delta-G solvation = -2305.078755 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.54434 -36.11752 -34.78550 -32.26941 -30.64674 -28.73282 -25.52594 -23.92185 -21.55944 -19.83583 -18.20167 -16.68216 -16.30831 -15.32504 -14.81892 -14.41168 -14.19600 -13.39898 -12.85606 -12.51659 -12.37674 -11.91081 -11.40089 -11.05307 -10.97638 -10.79957 -10.52784 -10.24018 -9.94510 -9.41259 -9.17374 -9.10783 -8.67414 -8.45468 -7.88030 -6.11966 -4.16588 3.22208 3.31604 3.34199 3.52845 4.35568 4.96243 5.14948 5.25499 5.66662 5.76936 5.95170 6.11785 6.26606 6.41339 6.46138 6.70782 6.73605 6.80354 6.96059 7.18887 7.38249 7.57838 7.82798 7.89718 8.15080 8.24943 8.28262 8.31224 8.87733 9.47499 10.95646 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033427 B = 0.014099 C = 0.011222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.443984 B = 1985.418019 C = 2494.557223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.066 0.934 9 C 0.064 3.936 10 H 0.038 0.962 11 C -0.028 4.028 12 C -0.285 4.285 13 C 0.150 3.850 14 H 0.039 0.961 15 O -0.568 6.568 16 C -0.095 4.095 17 C -0.069 4.069 18 H 0.060 0.940 19 C 0.086 3.914 20 O -0.583 6.583 21 H 0.261 0.739 22 H 0.107 0.893 23 H 0.080 0.920 24 H 0.364 0.636 25 H 0.058 0.942 26 H 0.079 0.921 27 H 0.055 0.945 28 H 0.039 0.961 29 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.606 -4.613 1.387 6.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.140 4.140 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.084 0.916 9 C 0.046 3.954 10 H 0.055 0.945 11 C -0.047 4.047 12 C -0.304 4.304 13 C 0.093 3.907 14 H 0.057 0.943 15 O -0.372 6.372 16 C -0.132 4.132 17 C -0.088 4.088 18 H 0.079 0.921 19 C 0.009 3.991 20 O -0.387 6.387 21 H 0.071 0.929 22 H 0.125 0.875 23 H 0.098 0.902 24 H 0.209 0.791 25 H 0.077 0.923 26 H 0.097 0.903 27 H 0.073 0.927 28 H 0.058 0.942 29 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges 3.483 -4.620 1.382 5.949 hybrid contribution 0.151 1.394 0.181 1.414 sum 3.634 -3.226 1.562 5.104 Atomic orbital electron populations 1.69946 1.05963 1.26653 1.50155 1.25025 0.94908 0.99297 0.94767 0.86524 0.80151 0.83684 0.77642 1.19684 1.20963 1.20996 1.21158 0.92913 0.89489 1.51035 0.91633 1.17843 0.91992 0.92394 0.93186 0.94453 1.22559 0.97684 0.89641 0.94817 1.22141 1.01023 1.07159 1.00077 1.20430 0.93408 0.79873 0.97030 0.94275 1.86574 1.63988 1.26946 1.59721 1.21525 0.96340 1.00861 0.94489 1.21089 0.95494 0.99368 0.92825 0.92129 1.22344 0.91683 0.86700 0.98366 1.86494 1.46770 1.43793 1.61674 0.92891 0.87542 0.90219 0.79057 0.92322 0.90283 0.92683 0.94237 0.79025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.59 11.76 55.43 0.65 -23.94 15 2 C 0.06 1.65 5.30 -17.82 -0.09 1.56 15 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 6 H -0.28 -6.60 7.11 56.52 0.40 -6.19 15 7 C -0.51 -13.19 7.06 -34.44 -0.24 -13.43 15 8 H 0.07 1.67 5.71 -52.49 -0.30 1.37 15 9 C 0.06 1.58 2.21 -93.22 -0.21 1.38 15 10 H 0.04 1.00 8.14 -51.93 -0.42 0.57 15 11 C -0.03 -0.68 8.21 -35.90 -0.29 -0.98 15 12 C -0.29 -6.13 9.39 -35.90 -0.34 -6.46 15 13 C 0.15 2.99 3.78 -28.16 -0.11 2.89 15 14 H 0.04 0.71 8.14 -51.93 -0.42 0.29 15 15 O -0.57 -10.70 12.89 -35.23 -0.45 -11.15 15 16 C -0.09 -2.00 4.89 -26.53 -0.13 -2.13 15 17 C -0.07 -1.53 2.24 -90.43 -0.20 -1.74 15 18 H 0.06 1.41 7.78 -51.93 -0.40 1.00 15 19 C 0.09 1.72 5.87 37.16 0.22 1.93 15 20 O -0.58 -10.58 13.15 -35.23 -0.46 -11.05 15 21 H 0.26 6.90 8.31 -40.82 -0.34 6.57 15 22 H 0.11 2.74 7.09 -52.49 -0.37 2.37 15 23 H 0.08 1.56 8.06 -52.49 -0.42 1.14 15 24 H 0.36 5.13 9.07 45.56 0.41 5.54 15 25 H 0.06 1.21 7.71 -51.93 -0.40 0.81 15 26 H 0.08 1.72 7.14 -51.93 -0.37 1.35 15 27 H 0.06 1.11 6.25 -51.93 -0.32 0.79 15 28 H 0.04 0.77 8.14 -51.92 -0.42 0.35 15 29 H 0.37 4.65 9.12 45.56 0.42 5.06 15 LS Contribution 238.28 15.07 3.59 3.59 Total: -1.00 -29.56 238.28 -5.26 -34.82 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.17 Total: 9.13 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -1.40 Total: -16.98 kcal Atomic # 7 Polarization: -24.59 SS G_CDS: 0.65 Total: -23.94 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.92 Total: -22.20 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -29.56 -5.26 -34.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306506836.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.523 kcal (2) G-P(sol) polarization free energy of solvation -29.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds