Wall clock time and date at job start Mon Mar 30 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48499 * 109.47087 * 269.99885 * 3 2 1 5 5 H 1.48502 * 109.47208 * 29.99886 * 3 2 1 6 6 H 1.48496 * 109.47139 * 149.99460 * 3 2 1 7 7 C 1.37881 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00052 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.24611 * 60.34187 * 9 7 2 11 11 C 1.50069 * 109.35925 * 300.69118 * 9 7 2 12 12 C 1.29440 * 124.07524 * 222.66237 * 11 9 7 13 13 C 1.50069 * 124.07781 * 0.46561 * 12 11 9 14 14 H 1.09002 * 109.35847 * 103.07641 * 13 12 11 15 15 O 1.42900 * 109.24715 * 222.73346 * 13 12 11 16 16 C 1.53018 * 110.14599 * 342.87122 * 13 12 11 17 17 C 1.53022 * 109.35948 * 180.02562 * 9 7 2 18 18 H 1.08991 * 109.64235 * 49.95606 * 17 9 7 19 19 C 1.53004 * 109.64134 * 289.32706 * 17 9 7 20 20 O 1.42894 * 109.47448 * 176.05456 * 19 17 9 21 21 H 0.96997 * 119.99730 * 0.02562 * 1 2 3 22 22 H 1.08005 * 117.96479 * 42.68273 * 11 9 7 23 23 H 1.08009 * 117.96317 * 180.49091 * 12 11 9 24 24 H 0.96698 * 113.99931 * 300.34272 * 15 13 12 25 25 H 1.09001 * 109.64619 * 169.11767 * 16 13 12 26 26 H 1.09006 * 109.64657 * 289.74973 * 16 13 12 27 27 H 1.09003 * 109.47132 * 296.05641 * 19 17 9 28 28 H 1.09001 * 109.46872 * 56.05310 * 19 17 9 29 29 H 0.96699 * 114.00656 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6308 -2.5559 -0.8939 11 6 0.3760 -2.5683 1.2177 12 6 0.2377 -3.6250 1.9524 13 6 0.9409 -4.9257 1.6955 14 1 1.7704 -5.0322 2.3946 15 8 0.0215 -6.0034 1.8836 16 6 1.4773 -4.9608 0.2628 17 6 2.2477 -3.6603 0.0018 18 1 2.9868 -3.5079 0.7882 19 6 2.9456 -3.7406 -1.3574 20 8 3.9398 -4.7663 -1.3226 21 1 -0.4849 0.8400 -0.0004 22 1 -0.1728 -1.6814 1.4980 23 1 -0.4253 -3.5672 2.8031 24 1 -0.3569 -6.0470 2.7724 25 1 2.1459 -5.8132 0.1426 26 1 0.6462 -5.0415 -0.4378 27 1 2.2118 -3.9719 -2.1295 28 1 3.4181 -2.7839 -1.5802 29 1 4.4239 -4.8733 -2.1528 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306506837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:33 Heat of formation + Delta-G solvation = -100.494239 kcal Electronic energy + Delta-G solvation = -12959.884998 eV Core-core repulsion = 10654.626088 eV Total energy + Delta-G solvation = -2305.258909 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.51413 -36.28669 -34.98986 -32.49570 -30.65723 -28.85774 -25.58649 -23.82420 -21.48251 -20.15951 -17.51053 -16.65570 -16.64211 -16.26855 -15.18537 -14.45228 -13.93493 -13.34918 -13.14976 -12.57300 -12.17728 -11.77760 -11.57910 -11.35704 -10.88926 -10.80957 -10.55178 -10.39833 -9.88534 -9.69178 -9.41803 -9.18134 -8.87264 -8.51159 -7.81815 -6.12118 -4.18875 3.23528 3.31492 3.34512 3.48406 4.34723 4.82315 4.93869 5.21481 5.63406 5.69903 5.81888 5.98146 6.10514 6.29262 6.42452 6.49078 6.59336 6.67590 6.87545 6.93944 7.38260 7.66197 7.81831 7.88986 7.93431 8.13693 8.17403 8.34695 8.87163 9.46062 10.94393 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033853 B = 0.012726 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.901695 B = 2199.772560 C = 2856.717434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.513 4.513 8 H 0.061 0.939 9 C 0.068 3.932 10 H 0.044 0.956 11 C -0.045 4.045 12 C -0.285 4.285 13 C 0.149 3.851 14 H 0.045 0.955 15 O -0.573 6.573 16 C -0.101 4.101 17 C -0.071 4.071 18 H 0.069 0.931 19 C 0.087 3.913 20 O -0.582 6.582 21 H 0.263 0.737 22 H 0.119 0.881 23 H 0.084 0.916 24 H 0.368 0.632 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.058 0.942 29 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.791 -5.729 0.255 6.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.551 4.551 8 H 0.079 0.921 9 C 0.049 3.951 10 H 0.062 0.938 11 C -0.064 4.064 12 C -0.303 4.303 13 C 0.091 3.909 14 H 0.063 0.937 15 O -0.378 6.378 16 C -0.139 4.139 17 C -0.090 4.090 18 H 0.087 0.913 19 C 0.010 3.990 20 O -0.386 6.386 21 H 0.072 0.928 22 H 0.137 0.863 23 H 0.102 0.898 24 H 0.214 0.786 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 2.561 -5.761 0.248 6.309 hybrid contribution 0.329 1.312 0.155 1.362 sum 2.890 -4.449 0.404 5.320 Atomic orbital electron populations 1.69933 1.05941 1.26827 1.50042 1.25017 0.94907 0.99288 0.94844 0.86566 0.79916 0.83233 0.78192 1.20575 1.21168 1.19805 1.21149 0.93001 0.89865 1.51062 0.92069 1.17789 0.91856 0.91936 0.93470 0.93846 1.22765 0.92789 0.96373 0.94471 1.22342 1.07671 0.96402 1.03902 1.20478 0.89362 0.84141 0.96880 0.93716 1.86486 1.63266 1.51939 1.36129 1.21549 0.99231 0.98357 0.94727 1.21218 0.97439 0.94686 0.95662 0.91301 1.22252 0.89319 0.89652 0.97817 1.86466 1.53955 1.58704 1.39481 0.92758 0.86305 0.89792 0.78597 0.91932 0.91889 0.94394 0.92399 0.78707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.60 11.50 55.43 0.64 -23.97 15 2 C 0.06 1.63 5.26 -17.82 -0.09 1.54 15 3 Si 0.89 20.60 29.54 -169.99 -5.02 15.58 15 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 15 7 C -0.51 -13.48 7.84 -34.44 -0.27 -13.75 15 8 H 0.06 1.59 7.45 -52.49 -0.39 1.20 15 9 C 0.07 1.65 1.82 -93.22 -0.17 1.48 15 10 H 0.04 1.15 8.10 -51.93 -0.42 0.73 15 11 C -0.05 -1.10 8.56 -35.90 -0.31 -1.40 15 12 C -0.28 -6.05 9.38 -35.90 -0.34 -6.39 15 13 C 0.15 2.91 3.71 -28.18 -0.10 2.81 15 14 H 0.05 0.84 8.14 -51.93 -0.42 0.41 15 15 O -0.57 -10.30 13.29 -35.23 -0.47 -10.77 15 16 C -0.10 -2.04 4.91 -26.52 -0.13 -2.17 15 17 C -0.07 -1.52 1.85 -90.41 -0.17 -1.69 15 18 H 0.07 1.54 8.09 -51.93 -0.42 1.12 15 19 C 0.09 1.64 6.34 37.16 0.24 1.87 15 20 O -0.58 -9.87 13.11 -35.23 -0.46 -10.34 15 21 H 0.26 6.94 8.31 -40.82 -0.34 6.60 15 22 H 0.12 3.14 6.41 -52.48 -0.34 2.80 15 23 H 0.08 1.63 8.06 -52.48 -0.42 1.21 15 24 H 0.37 4.88 9.07 45.56 0.41 5.29 15 25 H 0.06 1.22 7.68 -51.93 -0.40 0.82 15 26 H 0.06 1.31 8.12 -51.93 -0.42 0.89 15 27 H 0.04 0.69 8.14 -51.93 -0.42 0.26 15 28 H 0.06 1.12 7.28 -51.93 -0.38 0.74 15 29 H 0.37 4.29 9.12 45.56 0.42 4.70 15 LS Contribution 242.43 15.07 3.65 3.65 Total: -1.00 -29.42 242.43 -5.35 -34.77 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.34 Total: 8.77 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -1.34 Total: -17.69 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.64 Total: -23.97 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.93 Total: -21.10 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -29.42 -5.35 -34.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306506837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.727 kcal (2) G-P(sol) polarization free energy of solvation -29.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds