Wall clock time and date at job start Mon Mar 30 2020 02:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 120.00234 * 2 1 4 4 H 1.48499 * 109.47087 * 269.99885 * 3 2 1 5 5 H 1.48502 * 109.47208 * 29.99886 * 3 2 1 6 6 H 1.48496 * 109.47139 * 149.99460 * 3 2 1 7 7 C 1.37881 * 119.99817 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99969 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00052 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.24611 * 60.34187 * 9 7 2 11 11 C 1.50069 * 109.35925 * 300.69118 * 9 7 2 12 12 C 1.29440 * 124.07524 * 222.66237 * 11 9 7 13 13 C 1.50069 * 124.07781 * 0.46561 * 12 11 9 14 14 H 1.09002 * 109.35847 * 103.07641 * 13 12 11 15 15 O 1.42900 * 109.24715 * 222.73346 * 13 12 11 16 16 C 1.53018 * 110.14599 * 342.87122 * 13 12 11 17 17 C 1.53022 * 109.35948 * 180.02562 * 9 7 2 18 18 H 1.08991 * 109.64235 * 49.95606 * 17 9 7 19 19 C 1.53004 * 109.64134 * 289.32706 * 17 9 7 20 20 O 1.42894 * 109.47448 * 176.05456 * 19 17 9 21 21 H 0.96997 * 119.99730 * 0.02562 * 1 2 3 22 22 H 1.08005 * 117.96479 * 42.68273 * 11 9 7 23 23 H 1.08009 * 117.96317 * 180.49091 * 12 11 9 24 24 H 0.96698 * 113.99931 * 300.34272 * 15 13 12 25 25 H 1.09001 * 109.64619 * 169.11767 * 16 13 12 26 26 H 1.09006 * 109.64657 * 289.74973 * 16 13 12 27 27 H 1.09003 * 109.47132 * 296.05641 * 19 17 9 28 28 H 1.09001 * 109.46872 * 56.05310 * 19 17 9 29 29 H 0.96699 * 114.00656 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6308 -2.5559 -0.8939 11 6 0.3760 -2.5683 1.2177 12 6 0.2377 -3.6250 1.9524 13 6 0.9409 -4.9257 1.6955 14 1 1.7704 -5.0322 2.3946 15 8 0.0215 -6.0034 1.8836 16 6 1.4773 -4.9608 0.2628 17 6 2.2477 -3.6603 0.0018 18 1 2.9868 -3.5079 0.7882 19 6 2.9456 -3.7406 -1.3574 20 8 3.9398 -4.7663 -1.3226 21 1 -0.4849 0.8400 -0.0004 22 1 -0.1728 -1.6814 1.4980 23 1 -0.4253 -3.5672 2.8031 24 1 -0.3569 -6.0470 2.7724 25 1 2.1459 -5.8132 0.1426 26 1 0.6462 -5.0415 -0.4378 27 1 2.2118 -3.9719 -2.1295 28 1 3.4181 -2.7839 -1.5802 29 1 4.4239 -4.8733 -2.1528 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306506837.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:33 Heat of formation + Delta-G solvation = -123.443770 kcal Electronic energy + Delta-G solvation = -12960.880164 eV Core-core repulsion = 10654.626088 eV Total energy + Delta-G solvation = -2306.254076 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.16315 -37.71427 -36.57543 -34.40967 -32.33819 -30.63073 -27.34605 -25.58117 -23.22543 -21.81772 -19.14306 -18.61612 -18.11898 -17.76832 -16.92557 -16.26214 -15.54103 -14.93690 -14.74573 -14.23544 -13.97699 -13.46107 -13.36437 -13.04368 -12.67887 -12.48770 -12.20764 -12.19690 -11.68209 -11.31678 -11.14813 -10.74715 -10.60839 -10.45557 -9.61782 -8.13915 -6.27174 1.40899 1.43201 1.52728 1.68642 2.42191 3.14976 3.43950 3.53789 4.02665 4.07934 4.21039 4.44798 4.53783 4.66336 4.74175 4.91749 4.92726 5.11099 5.15582 5.23812 5.50250 5.78283 5.84012 6.04333 6.08600 6.38870 6.87793 6.95052 7.01054 7.40737 8.91916 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033853 B = 0.012726 C = 0.009799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.901695 B = 2199.772560 C = 2856.717434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.070 3.930 10 H 0.012 0.988 11 C -0.083 4.083 12 C -0.257 4.257 13 C 0.152 3.848 14 H 0.064 0.936 15 O -0.578 6.578 16 C -0.096 4.096 17 C -0.067 4.067 18 H 0.058 0.942 19 C 0.096 3.904 20 O -0.586 6.586 21 H 0.262 0.738 22 H 0.090 0.910 23 H 0.104 0.896 24 H 0.391 0.609 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.683 -6.613 0.678 7.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.052 3.948 10 H 0.030 0.970 11 C -0.102 4.102 12 C -0.275 4.275 13 C 0.093 3.907 14 H 0.081 0.919 15 O -0.386 6.386 16 C -0.134 4.134 17 C -0.086 4.086 18 H 0.077 0.923 19 C 0.018 3.982 20 O -0.394 6.394 21 H 0.071 0.929 22 H 0.108 0.892 23 H 0.122 0.878 24 H 0.240 0.760 25 H 0.093 0.907 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.464 -6.665 0.669 7.541 hybrid contribution 0.027 1.492 0.059 1.493 sum 3.491 -5.173 0.728 6.282 Atomic orbital electron populations 1.70067 1.07262 1.27406 1.50952 1.25761 0.95640 1.02470 0.94663 0.85600 0.78718 0.79310 0.78335 1.19926 1.21126 1.19269 1.21443 0.93083 0.91081 1.50660 0.92222 1.17658 0.92070 0.92723 0.92365 0.96979 1.22541 0.94900 0.96723 0.96062 1.22670 1.05881 0.96198 1.02760 1.20404 0.89947 0.83438 0.96862 0.91857 1.86452 1.63057 1.50732 1.38320 1.21481 0.98915 0.97877 0.95087 1.21078 0.96663 0.94121 0.96753 0.92343 1.21979 0.89774 0.89891 0.96528 1.86393 1.53693 1.57676 1.41668 0.92886 0.89235 0.87796 0.75982 0.90723 0.92952 0.93800 0.93317 0.75793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.05 11.50 21.45 0.25 -51.81 15 2 C 0.01 0.74 5.26 84.66 0.45 1.18 15 3 Si 0.95 42.50 29.54 68.60 2.03 44.53 15 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 15 5 H -0.29 -12.59 7.11 99.48 0.71 -11.89 15 6 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 7 C -0.52 -27.98 7.84 25.60 0.20 -27.78 15 8 H 0.06 3.11 7.45 -2.91 -0.02 3.09 15 9 C 0.07 3.48 1.82 -12.48 -0.02 3.46 15 10 H 0.01 0.68 8.10 -2.39 -0.02 0.66 15 11 C -0.08 -4.09 8.56 27.04 0.23 -3.85 15 12 C -0.26 -10.56 9.38 27.04 0.25 -10.31 15 13 C 0.15 5.53 3.71 29.66 0.11 5.64 15 14 H 0.06 2.14 8.14 -2.39 -0.02 2.12 15 15 O -0.58 -18.85 13.29 -148.98 -1.98 -20.83 15 16 C -0.10 -3.71 4.91 30.73 0.15 -3.56 15 17 C -0.07 -2.84 1.85 -10.66 -0.02 -2.86 15 18 H 0.06 2.56 8.09 -2.39 -0.02 2.54 15 19 C 0.10 3.53 6.34 71.98 0.46 3.99 15 20 O -0.59 -18.54 13.11 -148.98 -1.95 -20.50 15 21 H 0.26 14.16 8.31 -92.71 -0.77 13.39 15 22 H 0.09 4.89 6.41 -2.91 -0.02 4.87 15 23 H 0.10 3.81 8.06 -2.91 -0.02 3.79 15 24 H 0.39 8.86 9.07 -74.06 -0.67 8.19 15 25 H 0.07 2.71 7.68 -2.39 -0.02 2.69 15 26 H 0.05 2.12 8.12 -2.38 -0.02 2.10 15 27 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 28 H 0.05 1.87 7.28 -2.39 -0.02 1.85 15 29 H 0.39 8.08 9.12 -74.06 -0.68 7.40 15 Total: -1.00 -62.33 242.43 -0.05 -62.37 By element: Atomic # 1 Polarization: 20.50 SS G_CDS: -0.19 Total: 20.31 kcal Atomic # 6 Polarization: -35.89 SS G_CDS: 1.81 Total: -34.08 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.25 Total: -51.81 kcal Atomic # 8 Polarization: -37.39 SS G_CDS: -3.93 Total: -41.32 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -62.33 -0.05 -62.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306506837.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.071 kcal (2) G-P(sol) polarization free energy of solvation -62.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds