Wall clock time and date at job start Mon Mar 30 2020 02:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00062 * 2 1 4 4 H 1.48504 * 109.46905 * 240.00152 * 3 2 1 5 5 H 1.48493 * 109.47046 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47069 * 120.00094 * 3 2 1 7 7 C 1.37878 * 119.99762 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99547 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00420 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.35720 * 59.99990 * 9 7 2 11 11 C 1.50070 * 109.35707 * 300.27621 * 9 7 2 12 12 C 1.29444 * 124.07907 * 257.08319 * 11 9 7 13 13 C 1.50064 * 124.07248 * 359.50830 * 12 11 9 14 14 H 1.09005 * 109.35854 * 256.92585 * 13 12 11 15 15 O 1.42902 * 109.35776 * 137.20053 * 13 12 11 16 16 C 1.53023 * 110.14941 * 17.13324 * 13 12 11 17 17 C 1.53025 * 109.24831 * 179.65644 * 9 7 2 18 18 H 1.08996 * 109.64235 * 190.38280 * 17 9 7 19 19 C 1.52999 * 109.63996 * 311.01817 * 17 9 7 20 20 O 1.42905 * 109.46593 * 184.99906 * 19 17 9 21 21 H 0.96996 * 120.00238 * 0.02562 * 1 2 3 22 22 H 1.08004 * 117.96145 * 77.05858 * 11 9 7 23 23 H 1.07993 * 117.95854 * 179.53134 * 12 11 9 24 24 H 0.96698 * 113.99348 * 59.99931 * 15 13 12 25 25 H 1.08996 * 109.64553 * 70.24489 * 16 13 12 26 26 H 1.09004 * 109.64437 * 190.88119 * 16 13 12 27 27 H 1.08996 * 109.47432 * 304.99521 * 19 17 9 28 28 H 1.08997 * 109.47096 * 65.00191 * 19 17 9 29 29 H 0.96706 * 113.99604 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5548 -0.8909 11 6 0.3846 -2.5734 1.2225 12 6 0.6693 -3.2764 2.2715 13 6 1.9003 -4.1238 2.4070 14 1 1.6352 -5.1715 2.2644 15 8 2.4544 -3.9489 3.7125 16 6 2.9387 -3.7163 1.3595 17 6 2.2500 -3.6584 -0.0098 18 1 1.7232 -4.5945 -0.1949 19 6 3.2960 -3.4271 -1.1022 20 8 4.1569 -4.5646 -1.1857 21 1 -0.4850 0.8400 -0.0004 22 1 -0.5334 -2.0044 1.2280 23 1 -0.0224 -3.2517 3.1005 24 1 1.8557 -4.1966 4.4303 25 1 3.3436 -2.7351 1.6074 26 1 3.7424 -4.4522 1.3346 27 1 2.7955 -3.2792 -2.0591 28 1 3.8851 -2.5426 -0.8597 29 1 4.8461 -4.4876 -1.8597 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306506838.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:36 Heat of formation + Delta-G solvation = -97.439074 kcal Electronic energy + Delta-G solvation = -13109.135141 eV Core-core repulsion = 10804.008713 eV Total energy + Delta-G solvation = -2305.126428 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.52723 -36.22761 -34.94365 -32.32848 -30.66050 -28.69244 -25.51992 -23.88164 -21.60824 -19.99935 -17.98740 -16.61193 -16.38757 -15.58496 -15.09597 -14.44577 -14.18510 -13.29899 -13.07110 -12.49064 -12.40080 -11.70755 -11.41793 -11.00983 -10.94691 -10.77551 -10.50663 -10.37583 -10.08673 -9.63682 -9.28719 -9.05475 -8.72091 -8.47510 -7.80156 -6.10601 -4.14782 3.26439 3.32466 3.35332 3.53278 4.37565 4.88977 4.99607 5.27405 5.71317 5.81648 5.87915 6.03941 6.15609 6.34514 6.46572 6.62995 6.65286 6.70641 6.92591 7.17025 7.35649 7.54620 7.83164 7.87162 8.11898 8.18327 8.24170 8.30451 8.87854 9.49020 10.97185 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.028371 B = 0.014674 C = 0.011712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 986.681602 B = 1907.689269 C = 2390.060474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.509 4.509 8 H 0.065 0.935 9 C 0.067 3.933 10 H 0.039 0.961 11 C -0.041 4.041 12 C -0.279 4.279 13 C 0.152 3.848 14 H 0.040 0.960 15 O -0.571 6.571 16 C -0.094 4.094 17 C -0.071 4.071 18 H 0.054 0.946 19 C 0.088 3.912 20 O -0.585 6.585 21 H 0.262 0.738 22 H 0.108 0.892 23 H 0.082 0.918 24 H 0.366 0.634 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.042 0.958 28 H 0.058 0.942 29 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.058 -5.513 0.409 6.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.546 4.546 8 H 0.083 0.917 9 C 0.048 3.952 10 H 0.057 0.943 11 C -0.059 4.059 12 C -0.297 4.297 13 C 0.094 3.906 14 H 0.058 0.942 15 O -0.375 6.375 16 C -0.132 4.132 17 C -0.089 4.089 18 H 0.072 0.928 19 C 0.011 3.989 20 O -0.390 6.390 21 H 0.072 0.928 22 H 0.126 0.874 23 H 0.100 0.900 24 H 0.211 0.789 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 3.008 -5.377 0.539 6.185 hybrid contribution 0.053 1.156 0.010 1.158 sum 3.061 -4.221 0.549 5.243 Atomic orbital electron populations 1.69918 1.05957 1.26894 1.50024 1.25003 0.94908 0.99283 0.94670 0.86636 0.79649 0.82966 0.78728 1.20175 1.21255 1.20120 1.21069 0.92828 0.89496 1.51251 0.91748 1.17825 0.91807 0.92352 0.93192 0.94338 1.22522 0.98201 0.89809 0.95403 1.22230 1.00190 1.07186 1.00121 1.20455 0.92059 0.95704 0.82415 0.94176 1.86525 1.44855 1.90319 1.15816 1.21451 0.96597 1.02296 0.92853 1.21132 0.95750 0.99267 0.92775 0.92793 1.22300 0.91550 0.86924 0.98104 1.86457 1.47246 1.43838 1.61454 0.92788 0.87428 0.89980 0.78854 0.90410 0.92585 0.93938 0.92389 0.78763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.74 11.80 55.43 0.65 -24.09 15 2 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 15 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 15 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 15 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 15 7 C -0.51 -13.32 7.04 -34.44 -0.24 -13.57 15 8 H 0.06 1.66 5.69 -52.48 -0.30 1.36 15 9 C 0.07 1.62 2.21 -93.22 -0.21 1.41 15 10 H 0.04 1.00 8.14 -51.93 -0.42 0.58 15 11 C -0.04 -0.98 8.22 -35.90 -0.30 -1.27 15 12 C -0.28 -6.01 9.39 -35.90 -0.34 -6.35 15 13 C 0.15 3.05 3.71 -28.18 -0.10 2.95 15 14 H 0.04 0.75 8.14 -51.93 -0.42 0.33 15 15 O -0.57 -10.89 13.29 -35.23 -0.47 -11.35 15 16 C -0.09 -2.01 4.86 -26.52 -0.13 -2.14 15 17 C -0.07 -1.50 2.26 -90.41 -0.20 -1.71 15 18 H 0.05 1.12 8.12 -51.93 -0.42 0.70 15 19 C 0.09 1.70 5.87 37.16 0.22 1.91 15 20 O -0.59 -10.08 13.16 -35.23 -0.46 -10.54 15 21 H 0.26 7.01 8.31 -40.82 -0.34 6.67 15 22 H 0.11 2.76 7.12 -52.48 -0.37 2.39 15 23 H 0.08 1.62 8.06 -52.49 -0.42 1.20 15 24 H 0.37 5.17 9.07 45.56 0.41 5.59 15 25 H 0.08 1.83 7.11 -51.93 -0.37 1.46 15 26 H 0.06 1.15 7.72 -51.93 -0.40 0.74 15 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 15 28 H 0.06 1.16 6.25 -51.93 -0.32 0.83 15 29 H 0.37 4.41 9.12 45.56 0.42 4.82 15 LS Contribution 238.96 15.07 3.60 3.60 Total: -1.00 -29.66 238.96 -5.28 -34.94 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -2.19 Total: 8.68 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: -1.39 Total: -17.15 kcal Atomic # 7 Polarization: -24.74 SS G_CDS: 0.65 Total: -24.09 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.93 Total: -21.90 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 3.60 Total: 3.60 kcal Total: -29.66 -5.28 -34.94 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306506838.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.502 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds