Wall clock time and date at job start Mon Mar 30 2020 02:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99896 * 2 1 4 4 C 1.50703 * 119.99295 * 179.72810 * 2 1 3 5 5 H 1.08996 * 110.46045 * 349.85976 * 4 2 1 6 6 C 1.54479 * 110.50474 * 227.10801 * 4 2 1 7 7 O 1.44433 * 104.80223 * 217.37554 * 6 4 2 8 8 C 1.44421 * 105.26977 * 40.51846 * 7 6 4 9 9 H 1.09002 * 110.37772 * 78.31878 * 8 7 6 10 10 O 1.42899 * 110.37004 * 200.65397 * 8 7 6 11 11 C 1.54476 * 104.80755 * 319.48358 * 8 7 6 12 12 H 1.09007 * 110.63170 * 265.28617 * 11 8 7 13 13 C 1.50697 * 110.51415 * 142.62591 * 11 8 7 14 14 H 1.07994 * 120.00246 * 330.10922 * 13 11 8 15 15 C 1.37883 * 119.99849 * 150.11197 * 13 11 8 16 16 N 1.31510 * 119.99482 * 174.24835 * 15 13 11 17 17 Si 1.86800 * 120.00204 * 354.24395 * 15 13 11 18 18 H 1.48498 * 109.46946 * 84.78663 * 17 15 13 19 19 H 1.48500 * 109.46961 * 204.78618 * 17 15 13 20 20 H 1.48499 * 109.47096 * 324.78779 * 17 15 13 21 21 H 1.08001 * 120.00175 * 179.97438 * 1 2 3 22 22 H 1.08000 * 119.99616 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46777 * 182.08079 * 3 2 1 24 24 H 1.08996 * 109.47423 * 302.07805 * 3 2 1 25 25 H 1.09004 * 109.46976 * 62.08642 * 3 2 1 26 26 H 1.08997 * 110.37633 * 336.20907 * 6 4 2 27 27 H 1.09000 * 110.37055 * 98.55432 * 6 4 2 28 28 H 0.96698 * 114.00524 * 295.38224 * 10 8 7 29 29 H 0.97001 * 119.99584 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0062 5 1 1.3832 -2.1368 0.1899 6 6 3.1868 -1.2765 1.0661 7 8 4.2835 -1.9958 0.4610 8 6 4.3007 -1.5719 -0.9194 9 1 4.7644 -0.5894 -1.0091 10 8 4.9958 -2.5264 -1.7242 11 6 2.8131 -1.5039 -1.3302 12 1 2.5034 -2.4339 -1.8071 13 6 2.5721 -0.3346 -2.2498 14 1 3.1815 0.5530 -2.1659 15 6 1.5733 -0.3980 -3.1982 16 7 1.2876 0.6609 -3.9239 17 14 0.6261 -1.9878 -3.4524 18 1 -0.4882 -2.0620 -2.4737 19 1 0.0766 -2.0214 -4.8316 20 1 1.5369 -3.1438 -3.2541 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5399 0.9353 -0.0004 23 1 3.1346 1.1062 -0.0373 24 1 1.7725 1.8926 -0.8707 25 1 1.8285 1.8603 0.9081 26 1 3.4796 -0.2489 1.2811 27 1 2.8614 -1.7779 1.9776 28 1 5.9350 -2.6115 -1.5105 29 1 0.5852 0.6163 -4.5914 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306519776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:22 Heat of formation + Delta-G solvation = -82.814123 kcal Electronic energy + Delta-G solvation = -13473.031918 eV Core-core repulsion = 11168.539676 eV Total energy + Delta-G solvation = -2304.492242 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.23539 -35.63084 -34.56987 -32.50767 -30.23827 -27.69609 -26.59007 -24.28006 -22.00845 -20.10800 -17.89268 -17.42394 -16.36114 -15.39528 -14.98601 -14.50053 -13.81399 -13.27156 -13.03837 -12.74022 -12.57836 -12.20596 -11.60112 -11.18044 -11.10730 -10.82679 -10.46108 -10.28674 -9.95605 -9.91630 -9.68929 -9.13465 -8.92280 -8.56320 -7.95667 -6.12630 -4.10265 3.22631 3.31272 3.37241 3.41994 4.38827 4.41854 5.03719 5.15947 5.46815 5.69548 5.78135 5.87095 5.99158 6.11524 6.26608 6.44412 6.46781 6.58521 6.66328 6.79694 6.99896 7.07656 7.34149 7.54323 7.74074 7.84824 8.20886 8.41187 8.86488 9.50399 10.99187 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.019592 C = 0.014966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.023860 B = 1428.803527 C = 1870.410863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.036 4.036 3 C -0.100 4.100 4 C -0.099 4.099 5 H 0.067 0.933 6 C 0.062 3.938 7 O -0.421 6.421 8 C 0.254 3.746 9 H 0.065 0.935 10 O -0.544 6.544 11 C -0.001 4.001 12 H 0.060 0.940 13 C -0.500 4.500 14 H 0.080 0.920 15 C 0.087 3.913 16 N -0.892 5.892 17 Si 0.865 3.135 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.263 1.263 21 H 0.081 0.919 22 H 0.087 0.913 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.368 0.632 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 -1.853 7.709 8.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 C -0.036 4.036 3 C -0.156 4.156 4 C -0.118 4.118 5 H 0.086 0.914 6 C -0.014 4.014 7 O -0.343 6.343 8 C 0.159 3.841 9 H 0.082 0.918 10 O -0.348 6.348 11 C -0.020 4.020 12 H 0.078 0.922 13 C -0.537 4.537 14 H 0.098 0.902 15 C -0.116 4.116 16 N -0.529 5.529 17 Si 0.693 3.307 18 H -0.197 1.197 19 H -0.215 1.215 20 H -0.189 1.189 21 H 0.100 0.900 22 H 0.105 0.895 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.214 0.786 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.517 -1.985 7.366 7.778 hybrid contribution -0.251 -0.658 -0.208 0.734 sum 1.266 -2.643 7.158 7.735 Atomic orbital electron populations 1.23191 0.95366 1.00263 1.08696 1.20993 0.94280 0.94459 0.93834 1.20775 0.99760 0.94721 1.00350 1.22052 0.96702 0.95492 0.97599 0.91449 1.23292 0.86054 0.96232 0.95841 1.88921 1.51923 1.67976 1.25466 1.24277 0.95246 0.88348 0.76277 0.91793 1.86706 1.25383 1.64515 1.58242 1.20465 0.88451 0.99850 0.93227 0.92168 1.20678 1.17754 0.99852 1.15436 0.90240 1.24865 0.96081 0.95706 0.94976 1.69864 1.31169 1.28523 1.23315 0.87006 0.80706 0.85442 0.77592 1.19700 1.21534 1.18860 0.90035 0.89453 0.92629 0.90514 0.94095 0.91954 0.90221 0.78583 0.92585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.78 13.95 29.01 0.40 -4.38 15 2 C -0.04 -0.73 3.80 -101.07 -0.38 -1.11 15 3 C -0.10 -1.91 7.52 36.00 0.27 -1.64 15 4 C -0.10 -2.05 3.30 -90.20 -0.30 -2.35 15 5 H 0.07 1.37 7.88 -51.93 -0.41 0.96 15 6 C 0.06 1.13 6.98 37.93 0.26 1.39 15 7 O -0.42 -8.49 11.58 -58.82 -0.68 -9.17 15 8 C 0.25 5.44 4.34 37.93 0.16 5.61 15 9 H 0.06 1.35 7.75 -51.93 -0.40 0.94 15 10 O -0.54 -11.21 13.60 -58.82 -0.80 -12.01 15 11 C 0.00 -0.02 2.41 -90.20 -0.22 -0.23 15 12 H 0.06 1.55 5.12 -51.93 -0.27 1.28 15 13 C -0.50 -13.20 5.87 -34.44 -0.20 -13.40 15 14 H 0.08 2.22 6.96 -52.49 -0.37 1.86 15 15 C 0.09 2.41 5.43 -17.82 -0.10 2.32 15 16 N -0.89 -26.08 13.96 55.43 0.77 -25.30 15 17 Si 0.86 21.71 27.38 -169.99 -4.65 17.06 15 18 H -0.27 -6.65 7.11 56.52 0.40 -6.25 15 19 H -0.29 -7.25 7.11 56.52 0.40 -6.84 15 20 H -0.26 -6.62 6.32 56.52 0.36 -6.26 15 21 H 0.08 1.61 7.89 -52.49 -0.41 1.19 15 22 H 0.09 1.65 8.05 -52.49 -0.42 1.23 15 23 H 0.05 1.05 6.28 -51.93 -0.33 0.73 15 24 H 0.08 1.67 7.98 -51.93 -0.41 1.25 15 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 15 26 H 0.06 1.05 6.14 -51.93 -0.32 0.73 15 27 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 28 H 0.37 5.48 9.12 45.56 0.42 5.90 15 29 H 0.26 7.38 8.31 -40.82 -0.34 7.05 15 LS Contribution 238.42 15.07 3.59 3.59 Total: -1.00 -30.01 238.42 -4.81 -34.82 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -2.95 Total: 4.81 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: -0.09 Total: -13.80 kcal Atomic # 7 Polarization: -26.08 SS G_CDS: 0.77 Total: -25.30 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.48 Total: -21.19 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.65 Total: 17.06 kcal Total LS contribution 3.59 Total: 3.59 kcal Total: -30.01 -4.81 -34.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306519776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.989 kcal (2) G-P(sol) polarization free energy of solvation -30.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds