Wall clock time and date at job start Mon Mar 30 2020 02:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50693 * 119.99896 * 2 1 4 4 C 1.50703 * 119.99295 * 179.72810 * 2 1 3 5 5 H 1.08996 * 110.46045 * 349.85976 * 4 2 1 6 6 C 1.54479 * 110.50474 * 227.10801 * 4 2 1 7 7 O 1.44433 * 104.80223 * 217.37554 * 6 4 2 8 8 C 1.44421 * 105.26977 * 40.51846 * 7 6 4 9 9 H 1.09002 * 110.37772 * 78.31878 * 8 7 6 10 10 O 1.42899 * 110.37004 * 200.65397 * 8 7 6 11 11 C 1.54476 * 104.80755 * 319.48358 * 8 7 6 12 12 H 1.09007 * 110.63170 * 265.28617 * 11 8 7 13 13 C 1.50697 * 110.51415 * 142.62591 * 11 8 7 14 14 H 1.07994 * 120.00246 * 330.10922 * 13 11 8 15 15 C 1.37883 * 119.99849 * 150.11197 * 13 11 8 16 16 N 1.31510 * 119.99482 * 174.24835 * 15 13 11 17 17 Si 1.86800 * 120.00204 * 354.24395 * 15 13 11 18 18 H 1.48498 * 109.46946 * 84.78663 * 17 15 13 19 19 H 1.48500 * 109.46961 * 204.78618 * 17 15 13 20 20 H 1.48499 * 109.47096 * 324.78779 * 17 15 13 21 21 H 1.08001 * 120.00175 * 179.97438 * 1 2 3 22 22 H 1.08000 * 119.99616 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46777 * 182.08079 * 3 2 1 24 24 H 1.08996 * 109.47423 * 302.07805 * 3 2 1 25 25 H 1.09004 * 109.46976 * 62.08642 * 3 2 1 26 26 H 1.08997 * 110.37633 * 336.20907 * 6 4 2 27 27 H 1.09000 * 110.37055 * 98.55432 * 6 4 2 28 28 H 0.96698 * 114.00524 * 295.38224 * 10 8 7 29 29 H 0.97001 * 119.99584 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0634 -1.3052 0.0062 5 1 1.3832 -2.1368 0.1899 6 6 3.1868 -1.2765 1.0661 7 8 4.2835 -1.9958 0.4610 8 6 4.3007 -1.5719 -0.9194 9 1 4.7644 -0.5894 -1.0091 10 8 4.9958 -2.5264 -1.7242 11 6 2.8131 -1.5039 -1.3302 12 1 2.5034 -2.4339 -1.8071 13 6 2.5721 -0.3346 -2.2498 14 1 3.1815 0.5530 -2.1659 15 6 1.5733 -0.3980 -3.1982 16 7 1.2876 0.6609 -3.9239 17 14 0.6261 -1.9878 -3.4524 18 1 -0.4882 -2.0620 -2.4737 19 1 0.0766 -2.0214 -4.8316 20 1 1.5369 -3.1438 -3.2541 21 1 -0.5400 -0.9353 -0.0004 22 1 -0.5399 0.9353 -0.0004 23 1 3.1346 1.1062 -0.0373 24 1 1.7725 1.8926 -0.8707 25 1 1.8285 1.8603 0.9081 26 1 3.4796 -0.2489 1.2811 27 1 2.8614 -1.7779 1.9776 28 1 5.9350 -2.6115 -1.5105 29 1 0.5852 0.6163 -4.5914 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306519776.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:21 Heat of formation + Delta-G solvation = -104.529824 kcal Electronic energy + Delta-G solvation = -13473.973582 eV Core-core repulsion = 11168.539676 eV Total energy + Delta-G solvation = -2305.433906 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.86284 -37.24329 -36.18905 -34.51434 -32.04336 -29.33336 -28.14971 -26.20185 -23.56381 -21.88602 -19.74379 -19.03382 -18.17831 -17.13675 -16.61848 -16.05083 -15.72858 -14.88013 -14.79512 -14.52516 -14.26358 -13.93880 -13.27421 -12.97991 -12.77658 -12.47035 -12.20043 -12.04149 -11.75012 -11.67451 -11.45475 -10.95951 -10.71644 -10.55332 -9.55591 -8.25728 -6.23455 1.30458 1.34000 1.40843 1.63656 2.35405 2.84225 3.08474 3.51577 3.92148 4.05494 4.18193 4.33824 4.46015 4.57033 4.69409 4.88262 4.93640 5.00150 5.04671 5.14600 5.27780 5.44323 5.54313 5.86197 6.00808 6.24781 6.32234 6.73946 6.85824 7.38266 8.88980 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.028978 B = 0.019592 C = 0.014966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.023860 B = 1428.803527 C = 1870.410863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.050 4.050 3 C -0.093 4.093 4 C -0.099 4.099 5 H 0.072 0.928 6 C 0.064 3.936 7 O -0.421 6.421 8 C 0.260 3.740 9 H 0.067 0.933 10 O -0.561 6.561 11 C -0.012 4.012 12 H 0.040 0.960 13 C -0.482 4.482 14 H 0.056 0.944 15 C 0.042 3.958 16 N -0.933 5.933 17 Si 0.907 3.093 18 H -0.261 1.261 19 H -0.291 1.291 20 H -0.265 1.265 21 H 0.084 0.916 22 H 0.095 0.905 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.393 0.607 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.237 -2.585 9.327 9.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.050 4.050 3 C -0.149 4.149 4 C -0.118 4.118 5 H 0.090 0.910 6 C -0.012 4.012 7 O -0.343 6.343 8 C 0.164 3.836 9 H 0.085 0.915 10 O -0.369 6.369 11 C -0.031 4.031 12 H 0.058 0.942 13 C -0.520 4.520 14 H 0.075 0.925 15 C -0.157 4.157 16 N -0.572 5.572 17 Si 0.734 3.266 18 H -0.185 1.185 19 H -0.217 1.217 20 H -0.190 1.190 21 H 0.103 0.897 22 H 0.114 0.886 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.095 0.905 27 H 0.130 0.870 28 H 0.243 0.757 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.684 -2.732 9.007 9.562 hybrid contribution -0.235 -0.420 -0.669 0.824 sum 1.449 -3.152 8.338 9.031 Atomic orbital electron populations 1.23359 0.95449 1.00877 1.07928 1.21159 0.94631 0.94810 0.94421 1.20686 0.99463 0.94216 1.00546 1.21969 0.97443 0.95782 0.96596 0.91001 1.23484 0.84332 0.97525 0.95840 1.88924 1.52600 1.68307 1.24513 1.23977 0.93842 0.88799 0.76965 0.91542 1.86639 1.27590 1.64236 1.58467 1.20487 0.90939 0.97460 0.94234 0.94151 1.20754 1.16276 0.99768 1.15162 0.92544 1.25402 0.97326 0.97651 0.95342 1.69968 1.32439 1.30163 1.24653 0.86317 0.79999 0.82700 0.77577 1.18534 1.21714 1.18995 0.89742 0.88631 0.92745 0.93676 0.90724 0.90513 0.86982 0.75734 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.15 13.95 67.78 0.95 -8.20 15 2 C -0.05 -1.96 3.80 -16.49 -0.06 -2.02 15 3 C -0.09 -3.42 7.52 71.23 0.54 -2.89 15 4 C -0.10 -3.85 3.30 -10.52 -0.03 -3.89 15 5 H 0.07 2.73 7.88 -2.39 -0.02 2.71 15 6 C 0.06 2.09 6.98 72.48 0.51 2.60 15 7 O -0.42 -15.72 11.58 -126.43 -1.46 -17.19 15 8 C 0.26 10.66 4.34 72.48 0.31 10.98 15 9 H 0.07 2.70 7.75 -2.39 -0.02 2.68 15 10 O -0.56 -22.11 13.60 -126.43 -1.72 -23.83 15 11 C -0.01 -0.55 2.41 -10.52 -0.03 -0.57 15 12 H 0.04 2.03 5.12 -2.38 -0.01 2.02 15 13 C -0.48 -25.40 5.87 25.60 0.15 -25.25 15 14 H 0.06 3.20 6.96 -2.91 -0.02 3.18 15 15 C 0.04 2.32 5.43 84.66 0.46 2.78 15 16 N -0.93 -55.35 13.96 21.45 0.30 -55.05 15 17 Si 0.91 44.45 27.38 68.60 1.88 46.33 15 18 H -0.26 -12.17 7.11 99.48 0.71 -11.47 15 19 H -0.29 -14.20 7.11 99.48 0.71 -13.49 15 20 H -0.26 -12.92 6.32 99.48 0.63 -12.29 15 21 H 0.08 3.15 7.89 -2.91 -0.02 3.12 15 22 H 0.10 3.45 8.05 -2.91 -0.02 3.42 15 23 H 0.05 1.98 6.28 -2.38 -0.01 1.97 15 24 H 0.04 1.95 7.98 -2.39 -0.02 1.93 15 25 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 26 H 0.08 2.30 6.14 -2.39 -0.01 2.29 15 27 H 0.11 2.97 8.14 -2.39 -0.02 2.95 15 28 H 0.39 10.81 9.12 -74.06 -0.68 10.13 15 29 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 Total: -1.00 -62.86 238.42 2.18 -60.69 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: 0.39 Total: 15.52 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 2.79 Total: -26.46 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.30 Total: -55.05 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -3.18 Total: -41.02 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.88 Total: 46.33 kcal Total: -62.86 2.18 -60.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306519776.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.843 kcal (2) G-P(sol) polarization free energy of solvation -62.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds