Wall clock time and date at job start Mon Mar 30 2020 01:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47029 * 2 1 4 4 C 1.50709 * 109.46833 * 180.02562 * 3 2 1 5 5 N 1.29497 * 125.36952 * 0.35971 * 4 3 2 6 6 N 1.40273 * 107.83598 * 180.15757 * 5 4 3 7 7 C 1.37064 * 126.63397 * 179.81807 * 6 5 4 8 8 H 1.07993 * 119.99855 * 173.75121 * 7 6 5 9 9 C 1.38846 * 119.99819 * 353.75384 * 7 6 5 10 10 N 1.31432 * 120.00191 * 5.86476 * 9 7 6 11 11 Si 1.86800 * 119.99956 * 185.86689 * 9 7 6 12 12 H 1.48507 * 109.47084 * 89.99649 * 11 9 7 13 13 H 1.48504 * 109.47221 * 209.99905 * 11 9 7 14 14 H 1.48499 * 109.46921 * 329.99825 * 11 9 7 15 15 C 1.35028 * 106.73205 * 359.55912 * 6 5 4 16 16 O 1.21637 * 126.35066 * 180.24252 * 15 6 5 17 17 O 1.34401 * 107.29395 * 0.25889 * 15 6 5 18 18 H 1.09003 * 109.47130 * 59.99918 * 1 2 3 19 19 H 1.08998 * 109.47435 * 179.97438 * 1 2 3 20 20 H 1.09001 * 109.47021 * 299.99985 * 1 2 3 21 21 H 1.09001 * 109.47021 * 240.00015 * 2 1 3 22 22 H 1.08995 * 109.47289 * 120.00365 * 2 1 3 23 23 H 1.08996 * 109.47143 * 60.00596 * 3 2 1 24 24 H 1.09003 * 109.47231 * 300.00020 * 3 2 1 25 25 H 0.96994 * 120.00059 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 7 4.2966 0.3865 -0.0077 6 7 5.6342 0.8090 -0.0019 7 6 6.7454 0.0065 -0.0028 8 1 7.7277 0.4446 -0.0997 9 6 6.6080 -1.3696 0.1207 10 7 5.4113 -1.9130 0.1226 11 14 8.1240 -2.4486 0.2844 12 1 8.4685 -2.6037 1.7206 13 1 7.8478 -3.7832 -0.3053 14 1 9.2610 -1.8167 -0.4319 15 6 5.6154 2.1591 -0.0011 16 8 6.5849 2.8937 -0.0007 17 8 4.3267 2.5407 -0.0003 18 1 -0.3633 0.5139 -0.8900 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.8933 -0.5138 -0.8900 22 1 1.8934 -0.5139 0.8899 23 1 1.6768 1.9563 0.8900 24 1 1.6767 1.9563 -0.8900 25 1 5.3153 -2.8743 0.2093 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306719223.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:18 Heat of formation + Delta-G solvation = -38.833231 kcal Electronic energy + Delta-G solvation = -12579.830720 eV Core-core repulsion = 10173.705289 eV Total energy + Delta-G solvation = -2406.125431 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.96432 -38.62077 -37.25671 -36.14174 -34.42161 -31.95571 -29.06999 -26.99296 -24.37585 -22.92236 -21.81632 -20.41653 -18.43521 -17.77861 -17.14974 -16.68990 -16.05387 -16.02944 -15.44149 -14.22511 -14.02182 -13.69205 -13.66403 -12.97491 -12.86232 -12.70176 -12.61300 -12.28718 -12.11112 -11.89578 -11.54655 -11.41318 -11.02515 -9.93464 -8.52499 -6.33717 1.03937 1.20715 1.25683 1.45408 1.59295 1.65619 2.13670 2.40862 2.96774 3.66132 4.07940 4.20754 4.26166 4.61095 4.75165 4.78611 4.99180 5.04242 5.22834 5.37871 5.37989 5.59415 5.83663 6.23917 6.67572 7.09520 7.39304 8.50929 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.033413 B = 0.012982 C = 0.009435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.795830 B = 2156.320123 C = 2966.867846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C -0.009 4.009 4 C 0.140 3.860 5 N -0.227 5.227 6 N -0.268 5.268 7 C -0.360 4.360 8 H 0.114 0.886 9 C 0.009 3.991 10 N -0.830 5.830 11 Si 1.016 2.984 12 H -0.264 1.264 13 H -0.262 1.262 14 H -0.261 1.261 15 C 0.493 3.507 16 O -0.583 6.583 17 O -0.281 6.281 18 H 0.070 0.930 19 H 0.060 0.940 20 H 0.069 0.931 21 H 0.051 0.949 22 H 0.051 0.949 23 H 0.120 0.880 24 H 0.120 0.880 25 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.419 -1.534 0.179 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.147 4.147 3 C -0.047 4.047 4 C -0.081 4.081 5 N -0.060 5.060 6 N -0.084 5.084 7 C -0.486 4.486 8 H 0.132 0.868 9 C -0.201 4.201 10 N -0.461 5.461 11 Si 0.835 3.165 12 H -0.189 1.189 13 H -0.186 1.186 14 H -0.185 1.185 15 C 0.249 3.751 16 O -0.478 6.478 17 O -0.177 6.177 18 H 0.089 0.911 19 H 0.079 0.921 20 H 0.088 0.912 21 H 0.070 0.930 22 H 0.070 0.930 23 H 0.138 0.862 24 H 0.138 0.862 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.058 -2.063 0.176 9.291 hybrid contribution 0.997 0.421 0.034 1.083 sum -8.060 -1.643 0.210 8.229 Atomic orbital electron populations 1.21706 0.92194 1.02644 1.03132 1.21280 0.97510 0.93587 1.02363 1.20447 0.76917 1.00740 1.06643 1.27892 0.98467 0.78558 1.03225 1.77917 0.87776 1.20588 1.19677 1.45841 1.04209 1.03527 1.54779 1.19951 0.83436 0.89006 1.56253 0.86830 1.26529 1.02258 0.97425 0.93880 1.70235 1.23682 1.13055 1.39109 0.84648 0.75862 0.76696 0.79326 1.18869 1.18637 1.18499 1.19317 0.82026 0.84188 0.89563 1.90881 1.32697 1.59319 1.64854 1.84842 1.18011 1.36369 1.78495 0.91146 0.92074 0.91165 0.92979 0.93012 0.86230 0.86172 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 9.91 71.98 0.71 -1.85 15 2 C -0.11 -3.03 5.38 30.59 0.16 -2.86 15 3 C -0.01 -0.25 5.84 29.85 0.17 -0.08 15 4 C 0.14 6.10 8.10 88.46 0.72 6.81 15 5 N -0.23 -11.85 9.70 -165.88 -1.61 -13.46 15 6 N -0.27 -15.74 3.71 -432.83 -1.60 -17.35 15 7 C -0.36 -20.99 10.13 84.02 0.85 -20.14 15 8 H 0.11 6.57 7.84 -2.91 -0.02 6.55 15 9 C 0.01 0.48 5.50 84.90 0.47 0.94 15 10 N -0.83 -44.65 11.88 21.64 0.26 -44.39 15 11 Si 1.02 40.18 29.56 68.60 2.03 42.20 15 12 H -0.26 -10.08 7.11 99.48 0.71 -9.37 15 13 H -0.26 -9.65 7.11 99.48 0.71 -8.95 15 14 H -0.26 -10.11 7.11 99.48 0.71 -9.40 15 15 C 0.49 28.65 9.19 129.75 1.19 29.84 15 16 O -0.58 -36.42 17.89 18.98 0.34 -36.08 15 17 O -0.28 -13.90 10.71 15.89 0.17 -13.73 15 18 H 0.07 1.08 8.14 -2.39 -0.02 1.06 15 19 H 0.06 1.09 8.14 -2.39 -0.02 1.07 15 20 H 0.07 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 15 23 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 24 H 0.12 2.64 8.14 -2.39 -0.02 2.62 15 25 H 0.28 13.73 8.31 -92.71 -0.77 12.96 15 Total: -1.00 -71.66 231.95 5.05 -66.61 By element: Atomic # 1 Polarization: 2.33 SS G_CDS: 1.19 Total: 3.52 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 4.28 Total: 12.68 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -2.96 Total: -75.20 kcal Atomic # 8 Polarization: -50.32 SS G_CDS: 0.51 Total: -49.81 kcal Atomic # 14 Polarization: 40.18 SS G_CDS: 2.03 Total: 42.20 kcal Total: -71.66 5.05 -66.61 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306719223.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.779 kcal (2) G-P(sol) polarization free energy of solvation -71.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds