Wall clock time and date at job start Mon Mar 30 2020 02:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50705 * 119.99944 * 2 1 4 4 C 1.50699 * 120.00434 * 179.97438 * 2 1 3 5 5 H 1.09000 * 110.83477 * 236.69561 * 4 2 1 6 6 C 1.54996 * 110.90326 * 0.33524 * 4 2 1 7 7 O 1.44382 * 103.48813 * 155.22285 * 6 4 2 8 8 C 1.43745 * 106.97444 * 319.93748 * 7 6 4 9 9 H 1.08995 * 110.00764 * 267.01893 * 8 7 6 10 10 O 1.42905 * 109.87667 * 145.93777 * 8 7 6 11 11 C 1.54099 * 107.29193 * 26.51932 * 8 7 6 12 12 H 1.08998 * 110.49193 * 116.77563 * 11 8 7 13 13 C 1.50706 * 110.48268 * 239.29274 * 11 8 7 14 14 H 1.07996 * 120.00117 * 114.61442 * 13 11 8 15 15 C 1.37882 * 119.99604 * 294.88330 * 13 11 8 16 16 N 1.31509 * 120.00134 * 359.72861 * 15 13 11 17 17 Si 1.86796 * 119.99746 * 179.72828 * 15 13 11 18 18 H 1.48501 * 109.47286 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47178 * 120.00272 * 17 15 13 20 20 H 1.48504 * 109.47143 * 240.00226 * 17 15 13 21 21 H 1.08002 * 120.00442 * 356.62896 * 1 2 3 22 22 H 1.08004 * 120.00324 * 176.63344 * 1 2 3 23 23 H 1.09006 * 109.46562 * 275.39574 * 3 2 1 24 24 H 1.08999 * 109.47045 * 35.38843 * 3 2 1 25 25 H 1.08997 * 109.47293 * 155.39784 * 3 2 1 26 26 H 1.08999 * 110.62086 * 36.72374 * 6 4 2 27 27 H 1.09003 * 110.62039 * 273.72314 * 6 4 2 28 28 H 0.96705 * 113.99868 * 62.16905 * 10 8 7 29 29 H 0.97003 * 120.00197 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.0635 -1.3050 0.0006 5 1 2.7418 -1.3607 0.8520 6 6 1.0862 -2.5080 -0.0074 7 8 1.8662 -3.5717 -0.5944 8 6 2.6278 -2.9912 -1.6665 9 1 2.0837 -3.0886 -2.6058 10 8 3.8957 -3.6423 -1.7698 11 6 2.8300 -1.5010 -1.3300 12 1 3.8892 -1.2798 -1.1987 13 6 2.2409 -0.6317 -2.4110 14 1 1.3974 0.0059 -2.1914 15 6 2.7754 -0.6547 -3.6818 16 7 3.8026 -1.4311 -3.9492 17 14 2.0404 0.4171 -5.0236 18 1 0.9006 1.1913 -4.4699 19 1 3.0751 1.3533 -5.5316 20 1 1.5608 -0.4418 -6.1361 21 1 -0.5401 0.9337 0.0550 22 1 -0.5401 -0.9337 -0.0549 23 1 2.1614 1.6681 -1.0232 24 1 1.5195 2.0387 0.5951 25 1 3.0543 1.1527 0.4278 26 1 0.2126 -2.2888 -0.6213 27 1 0.7875 -2.7667 1.0086 28 1 3.8380 -4.5845 -1.9801 29 1 4.1784 -1.4475 -4.8433 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306772046.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:31 Heat of formation + Delta-G solvation = -103.390297 kcal Electronic energy + Delta-G solvation = -13371.285054 eV Core-core repulsion = 11065.900563 eV Total energy + Delta-G solvation = -2305.384492 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.75109 -37.15329 -36.01300 -34.72334 -31.55319 -29.47336 -27.49671 -26.33211 -23.80523 -21.98747 -19.45108 -18.89708 -17.75720 -17.06996 -16.49154 -16.28009 -15.74227 -14.81230 -14.56263 -14.15317 -14.02383 -13.66343 -13.49073 -12.87592 -12.62776 -12.45390 -12.33366 -12.03387 -11.87758 -11.31427 -11.16115 -10.94665 -10.57219 -10.44822 -9.57959 -8.09220 -6.22922 1.39907 1.43219 1.53515 1.59603 2.42217 2.98013 3.16688 3.70922 3.94869 4.13453 4.25998 4.42921 4.58641 4.75792 4.82163 4.88563 4.96904 5.01450 5.14143 5.27840 5.35455 5.55169 5.78608 5.92385 5.93405 6.21435 6.35740 6.85455 7.05606 7.45328 8.97084 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.026793 B = 0.018778 C = 0.012841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.785751 B = 1490.748111 C = 2179.992261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.079 4.079 3 C -0.110 4.110 4 C -0.091 4.091 5 H 0.075 0.925 6 C 0.064 3.936 7 O -0.435 6.435 8 C 0.270 3.730 9 H 0.039 0.961 10 O -0.557 6.557 11 C 0.040 3.960 12 H 0.009 0.991 13 C -0.518 4.518 14 H 0.081 0.919 15 C 0.010 3.990 16 N -0.905 5.905 17 Si 0.949 3.051 18 H -0.260 1.260 19 H -0.284 1.284 20 H -0.285 1.285 21 H 0.109 0.891 22 H 0.104 0.896 23 H 0.060 0.940 24 H 0.079 0.921 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.110 0.890 28 H 0.374 0.626 29 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.036 1.600 5.903 8.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.079 4.079 3 C -0.166 4.166 4 C -0.110 4.110 5 H 0.094 0.906 6 C -0.012 4.012 7 O -0.358 6.358 8 C 0.174 3.826 9 H 0.057 0.943 10 O -0.362 6.362 11 C 0.021 3.979 12 H 0.027 0.973 13 C -0.556 4.556 14 H 0.099 0.901 15 C -0.190 4.190 16 N -0.543 5.543 17 Si 0.775 3.225 18 H -0.183 1.183 19 H -0.210 1.210 20 H -0.211 1.211 21 H 0.127 0.873 22 H 0.122 0.878 23 H 0.078 0.922 24 H 0.097 0.903 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.128 0.872 28 H 0.221 0.779 29 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.686 1.939 5.955 8.459 hybrid contribution 0.021 -0.177 -1.322 1.334 sum -5.665 1.762 4.633 7.528 Atomic orbital electron populations 1.23747 0.94734 1.02465 1.05309 1.21238 0.95378 0.94475 0.96791 1.20801 0.99532 0.94306 1.01984 1.21813 0.97296 0.93918 0.97959 0.90650 1.23688 0.93485 0.85119 0.98879 1.88624 1.60174 1.35680 1.51335 1.23973 0.79635 0.91749 0.87229 0.94310 1.86736 1.29846 1.26770 1.92892 1.19759 0.95481 0.89983 0.92672 0.97332 1.21512 1.16174 1.24004 0.93874 0.90076 1.25876 0.95294 0.96729 1.01083 1.70234 1.23881 1.39130 1.21065 0.85633 0.78680 0.78886 0.79315 1.18339 1.21047 1.21140 0.87294 0.87814 0.92171 0.90256 0.93112 0.91245 0.87160 0.77922 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -7.04 13.09 67.79 0.89 -6.16 15 2 C -0.08 -2.82 3.40 -16.48 -0.06 -2.88 15 3 C -0.11 -3.67 9.51 71.24 0.68 -3.00 15 4 C -0.09 -3.72 3.37 -10.24 -0.03 -3.75 15 5 H 0.08 2.97 8.14 -2.39 -0.02 2.95 15 6 C 0.06 2.39 6.32 72.67 0.46 2.85 15 7 O -0.44 -19.42 11.43 -126.32 -1.44 -20.87 15 8 C 0.27 13.54 3.83 72.35 0.28 13.82 15 9 H 0.04 2.15 7.50 -2.39 -0.02 2.13 15 10 O -0.56 -27.71 13.49 -126.32 -1.70 -29.42 15 11 C 0.04 2.03 2.58 -10.55 -0.03 2.00 15 12 H 0.01 0.50 7.97 -2.39 -0.02 0.48 15 13 C -0.52 -27.07 7.08 25.60 0.18 -26.89 15 14 H 0.08 4.05 5.26 -2.91 -0.02 4.04 15 15 C 0.01 0.57 5.17 84.66 0.44 1.01 15 16 N -0.91 -52.67 12.69 21.45 0.27 -52.40 15 17 Si 0.95 42.70 29.54 68.60 2.03 44.72 15 18 H -0.26 -11.07 7.11 99.48 0.71 -10.36 15 19 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 20 H -0.29 -12.78 7.11 99.48 0.71 -12.07 15 21 H 0.11 2.92 8.05 -2.91 -0.02 2.90 15 22 H 0.10 3.06 5.51 -2.91 -0.02 3.04 15 23 H 0.06 2.24 7.26 -2.38 -0.02 2.23 15 24 H 0.08 2.11 8.10 -2.39 -0.02 2.09 15 25 H 0.05 1.71 8.09 -2.39 -0.02 1.69 15 26 H 0.07 2.53 6.11 -2.39 -0.01 2.51 15 27 H 0.11 3.33 8.14 -2.39 -0.02 3.31 15 28 H 0.37 14.81 9.12 -74.05 -0.68 14.14 15 29 H 0.26 14.39 8.31 -92.71 -0.77 13.61 15 Total: -1.00 -62.74 240.39 2.43 -60.31 By element: Atomic # 1 Polarization: 20.18 SS G_CDS: 0.47 Total: 20.65 kcal Atomic # 6 Polarization: -25.81 SS G_CDS: 2.80 Total: -23.01 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.27 Total: -52.40 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -3.15 Total: -50.28 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -62.74 2.43 -60.31 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306772046.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.081 kcal (2) G-P(sol) polarization free energy of solvation -62.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds