Wall clock time and date at job start Mon Mar 30 2020 02:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99736 * 2 1 4 4 H 1.48500 * 109.46984 * 264.76818 * 3 2 1 5 5 H 1.48497 * 109.47018 * 24.76841 * 3 2 1 6 6 H 1.48501 * 109.46971 * 144.76815 * 3 2 1 7 7 C 1.37872 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00254 * 5.04787 * 7 2 1 9 9 C 1.50704 * 119.99962 * 185.05215 * 7 2 1 10 10 H 1.09000 * 110.66905 * 325.46616 * 9 7 2 11 11 C 1.55818 * 110.90804 * 88.79780 * 9 7 2 12 12 H 1.09000 * 115.38415 * 319.55929 * 11 9 7 13 13 C 1.55819 * 105.32670 * 191.08975 * 11 9 7 14 14 C 1.55005 * 102.78648 * 287.30307 * 13 11 9 15 15 C 1.55824 * 102.78519 * 0.02562 * 14 13 11 16 16 H 1.09003 * 115.38371 * 201.15993 * 15 14 13 17 17 O 1.46523 * 101.24870 * 85.97842 * 11 9 7 18 18 C 1.55003 * 110.74864 * 202.25591 * 9 7 2 19 19 H 1.08995 * 110.74844 * 359.97438 * 18 9 7 20 20 C 1.53001 * 110.75115 * 123.16696 * 18 9 7 21 21 O 1.42897 * 109.47088 * 293.35943 * 20 18 9 22 22 H 0.96999 * 120.00471 * 359.97438 * 1 2 3 23 23 H 1.09005 * 110.75070 * 168.98689 * 13 11 9 24 24 H 1.08998 * 110.90949 * 45.70387 * 13 11 9 25 25 H 1.08992 * 110.75063 * 241.67518 * 14 13 11 26 26 H 1.09003 * 110.74297 * 118.32589 * 14 13 11 27 27 H 1.08998 * 109.47291 * 53.35721 * 20 18 9 28 28 H 1.09005 * 109.46870 * 173.35762 * 20 18 9 29 29 H 0.96695 * 114.00229 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6071 1.9826 -1.3943 5 1 1.3956 2.6820 0.5866 6 1 3.4870 1.4747 0.8077 7 6 2.0045 -1.1940 -0.0005 8 1 1.4677 -2.1275 -0.0832 9 6 3.5072 -1.1966 0.1144 10 1 3.9335 -0.3322 -0.3948 11 6 3.9506 -1.2317 1.6077 12 1 3.3650 -0.6088 2.2838 13 6 5.4815 -0.9420 1.5897 14 6 6.0732 -2.2588 1.0252 15 6 4.8055 -3.1341 0.7914 16 1 4.9825 -4.2085 0.7397 17 8 3.9355 -2.6720 1.8766 18 6 4.0989 -2.5132 -0.4502 19 1 3.3069 -3.1676 -0.8143 20 6 5.1110 -2.2208 -1.5598 21 8 4.4350 -1.6533 -2.6836 22 1 -0.4851 0.8400 0.0004 23 1 5.8508 -0.7538 2.5979 24 1 5.7109 -0.1028 0.9331 25 1 6.7373 -2.7265 1.7520 26 1 6.5947 -2.0761 0.0856 27 1 5.8592 -1.5182 -1.1931 28 1 5.5993 -3.1481 -1.8597 29 1 5.0164 -1.4424 -3.4269 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307399391.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:27 Heat of formation + Delta-G solvation = -107.134148 kcal Electronic energy + Delta-G solvation = -13516.872251 eV Core-core repulsion = 11211.325414 eV Total energy + Delta-G solvation = -2305.546838 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.75409 -37.53571 -34.99151 -33.39522 -31.82111 -31.16385 -27.18809 -25.36649 -22.34779 -21.99143 -20.26575 -19.00059 -18.39426 -17.64148 -16.32388 -16.07796 -15.77872 -15.13159 -14.85790 -14.54548 -13.89256 -13.38697 -13.00485 -12.84922 -12.63979 -12.52216 -12.20715 -11.80382 -11.72325 -11.51378 -11.29362 -10.83888 -10.72782 -10.60324 -10.47441 -8.27857 -6.28904 1.32114 1.35916 1.45735 2.35613 2.94080 3.20950 3.39460 3.78399 3.87442 4.14624 4.27025 4.35309 4.41668 4.46191 4.49250 4.68310 4.82271 4.87073 4.97268 5.04426 5.22901 5.36875 5.40314 5.44667 5.69168 5.83551 6.35639 6.74450 7.10809 7.32832 8.90274 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.033976 B = 0.016480 C = 0.014555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.906676 B = 1698.647673 C = 1923.335090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C 0.002 3.998 3 Si 0.947 3.053 4 H -0.268 1.268 5 H -0.288 1.288 6 H -0.234 1.234 7 C -0.501 4.501 8 H 0.013 0.987 9 C 0.006 3.994 10 H 0.046 0.954 11 C 0.049 3.951 12 H 0.096 0.904 13 C -0.148 4.148 14 C -0.142 4.142 15 C 0.064 3.936 16 H 0.147 0.853 17 O -0.403 6.403 18 C -0.117 4.117 19 H 0.043 0.957 20 C 0.087 3.913 21 O -0.594 6.594 22 H 0.264 0.736 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.235 -1.521 -0.890 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.157 1.157 7 C -0.539 4.539 8 H 0.032 0.968 9 C -0.013 4.013 10 H 0.064 0.936 11 C -0.009 4.009 12 H 0.114 0.886 13 C -0.186 4.186 14 C -0.179 4.179 15 C 0.007 3.993 16 H 0.164 0.836 17 O -0.322 6.322 18 C -0.136 4.136 19 H 0.062 0.938 20 C 0.011 3.989 21 O -0.401 6.401 22 H 0.073 0.927 23 H 0.099 0.901 24 H 0.096 0.904 25 H 0.111 0.889 26 H 0.121 0.879 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 16.457 -1.625 -0.316 16.540 hybrid contribution -0.361 0.747 -0.531 0.985 sum 16.096 -0.879 -0.847 16.142 Atomic orbital electron populations 1.70094 1.08511 1.27978 1.53117 1.26058 0.95578 1.03461 0.94238 0.85743 0.79735 0.77946 0.79563 1.19290 1.21399 1.15662 1.21209 0.91864 0.92296 1.48524 0.96814 1.20632 0.93684 0.94866 0.92093 0.93644 1.25067 0.95995 0.81870 0.97989 0.88581 1.23272 0.94173 0.98856 1.02250 1.23394 0.96786 0.94671 1.03053 1.24782 0.89817 0.99932 0.84784 0.83606 1.89952 1.70286 1.21576 1.50421 1.22833 0.97465 0.97824 0.95441 0.93841 1.22390 0.93043 0.97885 0.85625 1.86665 1.40371 1.85003 1.28101 0.92695 0.90120 0.90450 0.88944 0.87867 0.91146 0.91131 0.76045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.15 13.96 21.45 0.30 -62.86 15 2 C 0.00 0.14 5.47 84.65 0.46 0.60 15 3 Si 0.95 45.53 26.89 68.60 1.84 47.37 15 4 H -0.27 -12.48 7.11 99.48 0.71 -11.78 15 5 H -0.29 -13.61 7.11 99.48 0.71 -12.91 15 6 H -0.23 -9.92 6.81 99.48 0.68 -9.24 15 7 C -0.50 -30.76 8.95 25.60 0.23 -30.54 15 8 H 0.01 0.96 7.85 -2.91 -0.02 0.93 15 9 C 0.01 0.30 1.34 -9.88 -0.01 0.29 15 10 H 0.05 2.13 5.25 -2.39 -0.01 2.11 15 11 C 0.05 2.10 4.77 32.54 0.16 2.25 15 12 H 0.10 4.42 8.14 -2.39 -0.02 4.40 15 13 C -0.15 -4.57 6.52 32.26 0.21 -4.36 15 14 C -0.14 -3.60 6.17 32.26 0.20 -3.40 15 15 C 0.06 2.14 5.47 32.53 0.18 2.32 15 16 H 0.15 3.91 8.14 -2.39 -0.02 3.89 15 17 O -0.40 -17.72 11.65 -148.98 -1.74 -19.46 15 18 C -0.12 -4.69 2.87 -9.15 -0.03 -4.71 15 19 H 0.04 2.07 7.62 -2.39 -0.02 2.05 15 20 C 0.09 2.61 5.53 71.98 0.40 3.01 15 21 O -0.59 -20.47 13.49 -148.98 -2.01 -22.48 15 22 H 0.26 16.24 8.31 -92.71 -0.77 15.47 15 23 H 0.08 2.19 8.14 -2.38 -0.02 2.17 15 24 H 0.08 2.24 7.81 -2.39 -0.02 2.23 15 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 15 26 H 0.10 2.08 5.26 -2.39 -0.01 2.07 15 27 H 0.07 1.76 5.87 -2.39 -0.01 1.74 15 28 H 0.07 1.61 8.14 -2.38 -0.02 1.59 15 29 H 0.39 8.36 9.12 -74.06 -0.68 7.68 15 Total: -1.00 -78.30 231.89 0.64 -77.66 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.45 Total: 14.29 kcal Atomic # 6 Polarization: -36.33 SS G_CDS: 1.79 Total: -34.54 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.30 Total: -62.86 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -3.74 Total: -41.93 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.84 Total: 47.37 kcal Total: -78.30 0.64 -77.66 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307399391.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.473 kcal (2) G-P(sol) polarization free energy of solvation -78.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds