Wall clock time and date at job start Mon Mar 30 2020 02:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00306 * 2 1 4 4 H 1.48505 * 109.46981 * 269.99858 * 3 2 1 5 5 H 1.48504 * 109.46930 * 29.99523 * 3 2 1 6 6 H 1.48493 * 109.47256 * 149.99582 * 3 2 1 7 7 C 1.37878 * 119.99924 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00034 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00089 * 180.02562 * 7 2 1 10 10 H 1.08997 * 110.29282 * 57.85415 * 9 7 2 11 11 C 1.54556 * 110.33090 * 179.97438 * 9 7 2 12 12 C 1.54764 * 104.05618 * 142.57761 * 11 9 7 13 13 C 1.53363 * 103.72030 * 359.22036 * 12 11 9 14 14 C 1.53417 * 111.22499 * 215.76493 * 13 12 11 15 15 C 1.54753 * 103.80315 * 239.70941 * 14 13 12 16 16 O 1.44772 * 104.72578 * 336.40091 * 15 14 13 17 17 C 1.44685 * 105.56525 * 39.61487 * 16 15 14 18 18 O 1.43120 * 106.32460 * 337.32683 * 13 12 11 19 19 H 0.97002 * 120.00010 * 0.02562 * 1 2 3 20 20 H 1.08998 * 110.51401 * 23.93496 * 11 9 7 21 21 H 1.09001 * 110.51657 * 261.21983 * 11 9 7 22 22 H 1.09001 * 110.57621 * 240.65973 * 12 11 9 23 23 H 1.08999 * 110.70234 * 117.83912 * 12 11 9 24 24 H 1.09002 * 110.58740 * 358.33143 * 14 13 12 25 25 H 1.09001 * 110.58177 * 121.08821 * 14 13 12 26 26 H 1.08994 * 110.36689 * 95.13906 * 15 14 13 27 27 H 1.08996 * 110.36359 * 217.45253 * 15 14 13 28 28 H 1.08999 * 110.41576 * 201.85148 * 17 16 15 29 29 H 1.08999 * 110.51956 * 79.44592 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 1 3.8892 -0.6500 0.8667 11 6 4.0485 -2.6434 0.0023 12 6 5.2974 -2.5823 -0.9096 13 6 5.3469 -1.1174 -1.3609 14 6 5.8455 -0.9983 -2.8070 15 6 7.1175 -0.1250 -2.6882 16 8 6.9393 0.6196 -1.4595 17 6 6.3481 -0.3118 -0.5234 18 8 4.0167 -0.6082 -1.2211 19 1 -0.4850 0.8401 -0.0004 20 1 3.3064 -3.3260 -0.4117 21 1 4.3269 -2.9468 1.0115 22 1 5.1780 -3.2437 -1.7677 23 1 6.1962 -2.8412 -0.3499 24 1 6.0914 -1.9808 -3.2097 25 1 5.0992 -0.5057 -3.4302 26 1 8.0051 -0.7543 -2.6243 27 1 7.1927 0.5531 -3.5382 28 1 5.8325 0.2251 0.2729 29 1 7.1104 -0.9694 -0.1057 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307451573.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:27 Heat of formation + Delta-G solvation = -114.595236 kcal Electronic energy + Delta-G solvation = -13378.051030 eV Core-core repulsion = 11072.180656 eV Total energy + Delta-G solvation = -2305.870375 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.39358 -38.56020 -34.86292 -33.12925 -32.44460 -30.27178 -28.25512 -25.09521 -23.54745 -21.88604 -21.12761 -19.19347 -17.56499 -17.28014 -16.61716 -16.27174 -16.13356 -15.08150 -14.85100 -14.77104 -14.51307 -13.52483 -13.33127 -13.00474 -12.65971 -12.55193 -12.36699 -12.14756 -11.86139 -11.56603 -11.39257 -11.23565 -10.91761 -10.85444 -10.19309 -8.42027 -6.53880 1.29094 1.35964 1.45786 2.29517 2.79044 2.98031 3.37188 3.60798 3.85028 3.96452 4.09047 4.19638 4.31003 4.41456 4.50834 4.65935 4.77244 4.82492 4.92180 4.97842 4.99956 5.13854 5.22639 5.39110 5.49356 5.77421 6.15156 6.37427 6.63744 7.21412 8.72372 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.042157 B = 0.014491 C = 0.012121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.031804 B = 1931.757842 C = 2309.418157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.031 3.969 3 Si 0.957 3.043 4 H -0.283 1.283 5 H -0.286 1.286 6 H -0.257 1.257 7 C -0.527 4.527 8 H 0.048 0.952 9 C 0.160 3.840 10 H 0.028 0.972 11 C -0.135 4.135 12 C -0.126 4.126 13 C 0.047 3.953 14 C -0.145 4.145 15 C 0.045 3.955 16 O -0.405 6.405 17 C 0.032 3.968 18 O -0.392 6.392 19 H 0.270 0.730 20 H 0.057 0.943 21 H 0.083 0.917 22 H 0.087 0.913 23 H 0.105 0.895 24 H 0.114 0.886 25 H 0.064 0.936 26 H 0.092 0.908 27 H 0.101 0.899 28 H 0.069 0.931 29 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.977 -3.262 -3.199 16.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.169 4.169 3 Si 0.784 3.216 4 H -0.209 1.209 5 H -0.213 1.213 6 H -0.181 1.181 7 C -0.564 4.564 8 H 0.066 0.934 9 C 0.105 3.895 10 H 0.045 0.955 11 C -0.173 4.173 12 C -0.163 4.163 13 C 0.006 3.994 14 C -0.182 4.182 15 C -0.031 4.031 16 O -0.325 6.325 17 C -0.045 4.045 18 O -0.313 6.313 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.101 0.899 22 H 0.106 0.894 23 H 0.123 0.877 24 H 0.133 0.867 25 H 0.083 0.917 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.088 0.912 29 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 15.770 -2.802 -3.294 16.352 hybrid contribution -0.528 0.577 0.100 0.788 sum 15.243 -2.226 -3.194 15.732 Atomic orbital electron populations 1.70028 1.07967 1.28442 1.50996 1.25840 0.95392 1.03036 0.92620 0.85542 0.78838 0.78765 0.78455 1.20894 1.21274 1.18076 1.21317 0.90351 0.93535 1.51205 0.93374 1.21068 0.92802 0.91539 0.84123 0.95476 1.22857 0.97088 0.96747 1.00619 1.22839 0.98724 0.94330 1.00419 1.23134 0.85300 0.94468 0.96468 1.22958 0.97872 1.02849 0.94543 1.23731 0.96991 0.95096 0.87274 1.89146 1.82896 1.36407 1.24036 1.23928 0.95432 0.92506 0.92652 1.89130 1.26572 1.70339 1.45222 0.92115 0.92451 0.89866 0.89423 0.87667 0.86729 0.91694 0.89024 0.88034 0.91223 0.88249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.63 13.96 21.45 0.30 -59.33 15 2 C 0.03 1.91 5.47 84.65 0.46 2.37 15 3 Si 0.96 49.67 26.47 68.60 1.82 51.48 15 4 H -0.28 -14.99 7.11 99.48 0.71 -14.28 15 5 H -0.29 -14.16 7.11 99.48 0.71 -13.45 15 6 H -0.26 -12.69 6.48 99.48 0.64 -12.05 15 7 C -0.53 -31.18 9.36 25.60 0.24 -30.94 15 8 H 0.05 3.07 7.81 -2.91 -0.02 3.04 15 9 C 0.16 7.73 2.19 30.38 0.07 7.80 15 10 H 0.03 1.33 6.52 -2.39 -0.02 1.32 15 11 C -0.14 -5.07 6.63 31.73 0.21 -4.86 15 12 C -0.13 -3.62 6.17 31.32 0.19 -3.42 15 13 C 0.05 1.61 1.12 -10.40 -0.01 1.60 15 14 C -0.14 -4.07 6.54 31.33 0.20 -3.86 15 15 C 0.05 1.10 7.68 72.58 0.56 1.66 15 16 O -0.41 -13.61 11.66 -148.98 -1.74 -15.34 15 17 C 0.03 1.02 6.80 72.11 0.49 1.51 15 18 O -0.39 -18.72 8.90 -148.98 -1.33 -20.05 15 19 H 0.27 16.06 8.31 -92.71 -0.77 15.29 15 20 H 0.06 2.29 7.70 -2.39 -0.02 2.27 15 21 H 0.08 2.70 8.14 -2.39 -0.02 2.68 15 22 H 0.09 2.24 7.56 -2.39 -0.02 2.22 15 23 H 0.10 2.25 7.42 -2.39 -0.02 2.23 15 24 H 0.11 2.41 7.43 -2.39 -0.02 2.39 15 25 H 0.06 2.11 8.02 -2.39 -0.02 2.09 15 26 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 27 H 0.10 2.18 8.14 -2.39 -0.02 2.16 15 28 H 0.07 2.58 7.36 -2.39 -0.02 2.57 15 29 H 0.10 2.42 7.45 -2.39 -0.02 2.40 15 Total: -1.00 -71.43 233.66 2.53 -68.90 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: 1.07 Total: 2.49 kcal Atomic # 6 Polarization: -30.56 SS G_CDS: 2.41 Total: -28.15 kcal Atomic # 7 Polarization: -59.63 SS G_CDS: 0.30 Total: -59.33 kcal Atomic # 8 Polarization: -32.33 SS G_CDS: -3.06 Total: -35.39 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 1.82 Total: 51.48 kcal Total: -71.43 2.53 -68.90 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307451573.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.699 kcal (2) G-P(sol) polarization free energy of solvation -71.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds