Wall clock time and date at job start Mon Mar 30 2020 02:15:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86794 * 120.00245 * 2 1
4 4 H 1.48504 * 109.47335 * 240.00006 * 3 2 1
5 5 H 1.48496 * 109.47310 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47109 * 120.00304 * 3 2 1
7 7 C 1.37880 * 119.99912 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00279 * 180.02562 * 7 2 1
9 9 C 1.50709 * 119.99736 * 359.97438 * 7 2 1
10 10 H 1.08998 * 110.52821 * 302.80721 * 9 7 2
11 11 C 1.55062 * 110.58626 * 180.02562 * 9 7 2
12 12 C 1.55022 * 102.11293 * 204.94881 * 11 9 7
13 13 C 1.53324 * 103.82119 * 20.85836 * 12 11 9
14 14 C 1.54029 * 110.49420 * 240.01640 * 13 12 11
15 15 C 1.55167 * 101.89350 * 260.84616 * 14 13 12
16 16 O 1.44732 * 103.72510 * 323.71403 * 15 14 13
17 17 C 1.43981 * 106.85848 * 39.31631 * 16 15 14
18 18 O 1.42819 * 108.27736 * 1.61996 * 13 12 11
19 19 H 0.97004 * 119.99885 * 359.97438 * 1 2 3
20 20 H 1.09002 * 110.87067 * 86.79289 * 11 9 7
21 21 H 1.08993 * 111.05290 * 323.18210 * 11 9 7
22 22 H 1.08998 * 110.55254 * 262.27663 * 12 11 9
23 23 H 1.08994 * 110.67821 * 139.50402 * 12 11 9
24 24 H 1.08995 * 110.94683 * 18.99584 * 14 13 12
25 25 H 1.08996 * 110.94134 * 142.70149 * 14 13 12
26 26 H 1.09004 * 110.59989 * 82.13621 * 15 14 13
27 27 H 1.08998 * 110.59930 * 204.92485 * 15 14 13
28 28 H 1.09002 * 109.92688 * 214.51978 * 17 16 15
29 29 H 1.08996 * 109.92779 * 93.40002 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2843 2.7464 0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 1 0.5811 -2.5538 0.8577
11 6 2.2353 -3.6973 -0.0005
12 6 1.3801 -4.8211 -0.6399
13 6 0.2826 -4.0617 -1.3947
14 6 -1.1083 -4.4511 -0.8597
15 6 -1.5762 -5.4907 -1.9122
16 8 -1.0496 -4.9780 -3.1590
17 6 0.2627 -4.4579 -2.8756
18 8 0.5157 -2.6617 -1.2350
19 1 -0.4850 0.8401 0.0004
20 1 2.5259 -3.9611 1.0164
21 1 3.1130 -3.4828 -0.6101
22 1 0.9446 -5.4563 0.1314
23 1 1.9789 -5.4149 -1.3304
24 1 -1.0327 -4.9043 0.1287
25 1 -1.7742 -3.5884 -0.8414
26 1 -1.1544 -6.4722 -1.6957
27 1 -2.6646 -5.5410 -1.9441
28 1 0.4579 -3.5836 -3.4967
29 1 1.0148 -5.2236 -3.0654
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000307451575.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:15:32
Heat of formation + Delta-G solvation = -95.240385 kcal
Electronic energy + Delta-G solvation = -13225.977001 eV
Core-core repulsion = 10920.945916 eV
Total energy + Delta-G solvation = -2305.031085 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.66038 -36.86595 -32.71535 -31.19208 -30.46438 -28.82523 -26.08109 -23.00196
-22.36859 -20.37440 -19.43385 -16.61553 -15.90388 -15.50193 -15.08690 -14.61592
-14.39988 -13.33073 -13.18090 -12.69073 -12.18277 -12.03221 -11.67797 -11.21897
-11.02127 -10.89370 -10.64887 -10.45119 -10.16225 -9.96110 -9.65679 -9.35063
-9.10072 -8.62133 -8.07434 -6.05443 -4.18627 3.31020 3.35842 3.38028
4.33532 4.39665 4.81740 5.06671 5.33411 5.35405 5.46373 5.51930
5.60848 5.80726 6.04070 6.07898 6.13648 6.23373 6.39934 6.53255
6.54674 6.61408 6.74448 6.78789 7.23671 7.47513 7.85309 8.18534
8.54653 8.93536 9.52492 11.02499
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.055558 B = 0.010603 C = 0.009899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.855030 B = 2640.144733 C = 2827.991610
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.864 5.864
2 C 0.077 3.923
3 Si 0.895 3.105
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.275 1.275
7 C -0.532 4.532
8 H 0.064 0.936
9 C 0.208 3.792
10 H 0.030 0.970
11 C -0.147 4.147
12 C -0.144 4.144
13 C 0.067 3.933
14 C -0.166 4.166
15 C 0.048 3.952
16 O -0.383 6.383
17 C 0.055 3.945
18 O -0.339 6.339
19 H 0.263 0.737
20 H 0.060 0.940
21 H 0.065 0.935
22 H 0.064 0.936
23 H 0.064 0.936
24 H 0.075 0.925
25 H 0.087 0.913
26 H 0.054 0.946
27 H 0.086 0.914
28 H 0.092 0.908
29 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.027 -8.878 -1.002 8.935
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.500 5.500
2 C -0.129 4.129
3 Si 0.722 3.278
4 H -0.200 1.200
5 H -0.211 1.211
6 H -0.201 1.201
7 C -0.570 4.570
8 H 0.082 0.918
9 C 0.154 3.846
10 H 0.048 0.952
11 C -0.185 4.185
12 C -0.182 4.182
13 C 0.025 3.975
14 C -0.204 4.204
15 C -0.029 4.029
16 O -0.302 6.302
17 C -0.022 4.022
18 O -0.258 6.258
19 H 0.073 0.927
20 H 0.079 0.921
21 H 0.084 0.916
22 H 0.083 0.917
23 H 0.082 0.918
24 H 0.093 0.907
25 H 0.106 0.894
26 H 0.072 0.928
27 H 0.104 0.896
28 H 0.110 0.890
29 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -0.364 -8.596 -1.345 8.708
hybrid contribution 0.570 0.683 0.364 0.961
sum 0.206 -7.912 -0.981 7.976
Atomic orbital electron populations
1.70014 1.06096 1.26902 1.47019 1.25099 0.94821 0.99447 0.93559
0.86629 0.79673 0.82752 0.78746 1.19996 1.21128 1.20062 1.20973
0.92729 0.89767 1.53484 0.91796 1.20747 0.87593 0.92309 0.83995
0.95233 1.23262 0.99660 0.96092 0.99519 1.22986 0.97377 0.98353
0.99440 1.22608 0.93513 0.87661 0.93718 1.23563 0.98587 0.99767
0.98522 1.23527 0.99073 0.96108 0.84178 1.88924 1.31518 1.79326
1.30418 1.23251 0.84412 0.98364 0.96171 1.89215 1.76246 1.16076
1.44241 0.92739 0.92139 0.91634 0.91684 0.91774 0.90687 0.89407
0.92827 0.89573 0.88957 0.92337
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.86 -25.74 13.12 55.43 0.73 -25.01 15
2 C 0.08 2.18 5.44 -17.82 -0.10 2.09 15
3 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 15
4 H -0.27 -6.51 7.11 56.52 0.40 -6.11 15
5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15
6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15
7 C -0.53 -14.99 8.81 -34.43 -0.30 -15.29 15
8 H 0.06 1.73 7.76 -52.49 -0.41 1.33 15
9 C 0.21 5.38 3.10 -26.79 -0.08 5.30 15
10 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15
11 C -0.15 -3.05 6.56 -24.57 -0.16 -3.21 15
12 C -0.14 -2.57 6.30 -25.50 -0.16 -2.73 15
13 C 0.07 1.36 1.09 -89.76 -0.10 1.26 15
14 C -0.17 -3.03 6.44 -25.05 -0.16 -3.20 15
15 C 0.05 0.74 7.73 38.30 0.30 1.04 15
16 O -0.38 -7.13 11.56 -35.23 -0.41 -7.54 15
17 C 0.05 1.02 7.21 37.32 0.27 1.29 15
18 O -0.34 -8.84 10.31 -35.23 -0.36 -9.21 15
19 H 0.26 7.40 8.31 -40.82 -0.34 7.06 15
20 H 0.06 1.14 8.14 -51.93 -0.42 0.72 15
21 H 0.06 1.35 8.04 -51.93 -0.42 0.94 15
22 H 0.06 1.03 7.27 -51.93 -0.38 0.66 15
23 H 0.06 1.01 7.17 -51.93 -0.37 0.64 15
24 H 0.07 1.23 7.36 -51.93 -0.38 0.85 15
25 H 0.09 1.80 8.10 -51.93 -0.42 1.38 15
26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 15
27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 15
28 H 0.09 1.83 7.99 -51.93 -0.41 1.42 15
29 H 0.06 0.95 7.14 -51.93 -0.37 0.58 15
LS Contribution 240.25 15.07 3.62 3.62
Total: -1.00 -30.73 240.25 -5.93 -36.66
By element:
Atomic # 1 Polarization: 2.54 SS G_CDS: -3.99 Total: -1.45 kcal
Atomic # 6 Polarization: -12.95 SS G_CDS: -0.50 Total: -13.45 kcal
Atomic # 7 Polarization: -25.74 SS G_CDS: 0.73 Total: -25.01 kcal
Atomic # 8 Polarization: -15.97 SS G_CDS: -0.77 Total: -16.74 kcal
Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal
Total LS contribution 3.62 Total: 3.62 kcal
Total: -30.73 -5.93 -36.66 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307451575.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.576 kcal
(2) G-P(sol) polarization free energy of solvation -30.733 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.309 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.932 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal
(6) G-S(sol) free energy of system = (1) + (5) -95.240 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds