Wall clock time and date at job start Mon Mar 30 2020 02:15:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31512 * 1
3 3 Si 1.86794 * 120.00245 * 2 1
4 4 H 1.48504 * 109.47335 * 240.00006 * 3 2 1
5 5 H 1.48496 * 109.47310 * 0.02562 * 3 2 1
6 6 H 1.48501 * 109.47109 * 120.00304 * 3 2 1
7 7 C 1.37880 * 119.99912 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00279 * 180.02562 * 7 2 1
9 9 C 1.50709 * 119.99736 * 359.97438 * 7 2 1
10 10 H 1.08998 * 110.52821 * 302.80721 * 9 7 2
11 11 C 1.55062 * 110.58626 * 180.02562 * 9 7 2
12 12 C 1.55022 * 102.11293 * 204.94881 * 11 9 7
13 13 C 1.53324 * 103.82119 * 20.85836 * 12 11 9
14 14 C 1.54029 * 110.49420 * 240.01640 * 13 12 11
15 15 C 1.55167 * 101.89350 * 260.84616 * 14 13 12
16 16 O 1.44732 * 103.72510 * 323.71403 * 15 14 13
17 17 C 1.43981 * 106.85848 * 39.31631 * 16 15 14
18 18 O 1.42819 * 108.27736 * 1.61996 * 13 12 11
19 19 H 0.97004 * 119.99885 * 359.97438 * 1 2 3
20 20 H 1.09002 * 110.87067 * 86.79289 * 11 9 7
21 21 H 1.08993 * 111.05290 * 323.18210 * 11 9 7
22 22 H 1.08998 * 110.55254 * 262.27663 * 12 11 9
23 23 H 1.08994 * 110.67821 * 139.50402 * 12 11 9
24 24 H 1.08995 * 110.94683 * 18.99584 * 14 13 12
25 25 H 1.08996 * 110.94134 * 142.70149 * 14 13 12
26 26 H 1.09004 * 110.59989 * 82.13621 * 15 14 13
27 27 H 1.08998 * 110.59930 * 204.92485 * 15 14 13
28 28 H 1.09002 * 109.92688 * 214.51978 * 17 16 15
29 29 H 1.08996 * 109.92779 * 93.40002 * 17 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3151 0.0000 0.0000
3 14 2.2492 1.6176 0.0000
4 1 3.1030 1.6963 -1.2125
5 1 1.2843 2.7464 0.0006
6 1 3.1030 1.6962 1.2125
7 6 2.0045 -1.1941 -0.0005
8 1 3.0844 -1.1942 -0.0001
9 6 1.2509 -2.4992 -0.0005
10 1 0.5811 -2.5538 0.8577
11 6 2.2353 -3.6973 -0.0005
12 6 1.3801 -4.8211 -0.6399
13 6 0.2826 -4.0617 -1.3947
14 6 -1.1083 -4.4511 -0.8597
15 6 -1.5762 -5.4907 -1.9122
16 8 -1.0496 -4.9780 -3.1590
17 6 0.2627 -4.4579 -2.8756
18 8 0.5157 -2.6617 -1.2350
19 1 -0.4850 0.8401 0.0004
20 1 2.5259 -3.9611 1.0164
21 1 3.1130 -3.4828 -0.6101
22 1 0.9446 -5.4563 0.1314
23 1 1.9789 -5.4149 -1.3304
24 1 -1.0327 -4.9043 0.1287
25 1 -1.7742 -3.5884 -0.8414
26 1 -1.1544 -6.4722 -1.6957
27 1 -2.6646 -5.5410 -1.9441
28 1 0.4579 -3.5836 -3.4967
29 1 1.0148 -5.2236 -3.0654
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307451575.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:15:32
Heat of formation + Delta-G solvation = -116.841453 kcal
Electronic energy + Delta-G solvation = -13226.913694 eV
Core-core repulsion = 10920.945916 eV
Total energy + Delta-G solvation = -2305.967778 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.18 seconds
Orbital eigenvalues (eV)
-41.21050 -38.48335 -34.78335 -32.88036 -32.10371 -30.34468 -27.96039 -24.76930
-23.72469 -22.17417 -20.98986 -18.68610 -17.39400 -17.06748 -16.74369 -16.38958
-15.98460 -15.07526 -14.74736 -14.34227 -13.89231 -13.57247 -13.47302 -12.86892
-12.69886 -12.42155 -12.40254 -12.17527 -12.02732 -11.49524 -11.25285 -11.06088
-10.74695 -10.68510 -9.95456 -8.19625 -6.40579 1.39669 1.43036 1.50716
2.38849 2.97545 2.98783 3.46146 3.66219 3.87529 4.01115 4.13798
4.24575 4.41286 4.57680 4.64560 4.73482 4.81663 4.86108 4.92194
5.02703 5.06952 5.16347 5.24794 5.51986 5.71755 5.86939 6.12976
6.57270 6.93393 7.35658 8.88763
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.055558 B = 0.010603 C = 0.009899
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 503.855030 B = 2640.144733 C = 2827.991610
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.905 5.905
2 C 0.020 3.980
3 Si 0.965 3.035
4 H -0.270 1.270
5 H -0.283 1.283
6 H -0.261 1.261
7 C -0.556 4.556
8 H 0.068 0.932
9 C 0.200 3.800
10 H -0.004 1.004
11 C -0.140 4.140
12 C -0.131 4.131
13 C 0.047 3.953
14 C -0.167 4.167
15 C 0.053 3.947
16 O -0.401 6.401
17 C 0.058 3.942
18 O -0.380 6.380
19 H 0.262 0.738
20 H 0.077 0.923
21 H 0.063 0.937
22 H 0.090 0.910
23 H 0.094 0.906
24 H 0.093 0.907
25 H 0.050 0.950
26 H 0.089 0.911
27 H 0.105 0.895
28 H 0.068 0.932
29 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.941 -10.449 -1.073 10.546
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.543 5.543
2 C -0.182 4.182
3 Si 0.789 3.211
4 H -0.195 1.195
5 H -0.209 1.209
6 H -0.186 1.186
7 C -0.593 4.593
8 H 0.086 0.914
9 C 0.145 3.855
10 H 0.014 0.986
11 C -0.178 4.178
12 C -0.168 4.168
13 C 0.006 3.994
14 C -0.205 4.205
15 C -0.023 4.023
16 O -0.320 6.320
17 C -0.018 4.018
18 O -0.300 6.300
19 H 0.071 0.929
20 H 0.096 0.904
21 H 0.082 0.918
22 H 0.109 0.891
23 H 0.113 0.887
24 H 0.112 0.888
25 H 0.069 0.931
26 H 0.107 0.893
27 H 0.124 0.876
28 H 0.086 0.914
29 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges 0.613 -10.185 -1.412 10.301
hybrid contribution 0.220 1.122 0.386 1.207
sum 0.833 -9.063 -1.026 9.159
Atomic orbital electron populations
1.70164 1.07844 1.27681 1.48575 1.26024 0.95660 1.03392 0.93114
0.85522 0.78349 0.77968 0.79252 1.19491 1.20862 1.18560 1.21464
0.93264 0.91401 1.53145 0.91416 1.20629 0.88047 0.93822 0.83031
0.98612 1.23135 0.98702 0.94997 1.00974 1.22963 0.96158 0.97481
1.00184 1.23042 0.95460 0.85379 0.95537 1.23528 0.96903 0.99510
1.00593 1.23725 1.00475 0.96320 0.81741 1.88901 1.31598 1.79602
1.31928 1.23224 0.85484 0.98615 0.94501 1.89114 1.76769 1.20154
1.43920 0.92874 0.90403 0.91784 0.89147 0.88731 0.88820 0.93112
0.89301 0.87640 0.91352 0.88931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.79 13.12 21.45 0.28 -55.51 15
2 C 0.02 1.16 5.44 84.66 0.46 1.62 15
3 Si 0.97 44.46 29.54 68.60 2.03 46.49 15
4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15
5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15
6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15
7 C -0.56 -31.84 8.81 25.60 0.23 -31.62 15
8 H 0.07 3.70 7.76 -2.91 -0.02 3.67 15
9 C 0.20 10.53 3.10 30.56 0.09 10.62 15
10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15
11 C -0.14 -5.60 6.56 31.99 0.21 -5.39 15
12 C -0.13 -4.24 6.30 31.39 0.20 -4.05 15
13 C 0.05 1.85 1.09 -10.23 -0.01 1.84 15
14 C -0.17 -5.95 6.44 31.68 0.20 -5.74 15
15 C 0.05 1.50 7.73 72.72 0.56 2.07 15
16 O -0.40 -14.15 11.56 -148.98 -1.72 -15.88 15
17 C 0.06 2.09 7.21 72.09 0.52 2.61 15
18 O -0.38 -20.32 10.31 -148.98 -1.54 -21.86 15
19 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15
20 H 0.08 2.78 8.14 -2.39 -0.02 2.77 15
21 H 0.06 2.55 8.04 -2.39 -0.02 2.53 15
22 H 0.09 2.49 7.27 -2.39 -0.02 2.47 15
23 H 0.09 2.52 7.17 -2.39 -0.02 2.50 15
24 H 0.09 2.90 7.36 -2.39 -0.02 2.88 15
25 H 0.05 2.15 8.10 -2.39 -0.02 2.13 15
26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15
27 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15
28 H 0.07 2.73 7.99 -2.39 -0.02 2.72 15
29 H 0.09 2.66 7.14 -2.39 -0.02 2.65 15
Total: -1.00 -68.49 240.25 2.64 -65.85
By element:
Atomic # 1 Polarization: 7.81 SS G_CDS: 1.12 Total: 8.94 kcal
Atomic # 6 Polarization: -30.50 SS G_CDS: 2.46 Total: -28.03 kcal
Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.51 kcal
Atomic # 8 Polarization: -34.47 SS G_CDS: -3.26 Total: -37.73 kcal
Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal
Total: -68.49 2.64 -65.85 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307451575.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -50.993 kcal
(2) G-P(sol) polarization free energy of solvation -68.485 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.478 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.849 kcal
(6) G-S(sol) free energy of system = (1) + (5) -116.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.18 seconds