Wall clock time and date at job start Mon Mar 30 2020 02:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86794 * 120.00245 * 2 1 4 4 H 1.48504 * 109.47335 * 240.00006 * 3 2 1 5 5 H 1.48496 * 109.47310 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47109 * 120.00304 * 3 2 1 7 7 C 1.37880 * 119.99912 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00279 * 180.02562 * 7 2 1 9 9 C 1.50709 * 119.99736 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.52821 * 302.80721 * 9 7 2 11 11 C 1.55062 * 110.58626 * 180.02562 * 9 7 2 12 12 C 1.55022 * 102.11293 * 204.94881 * 11 9 7 13 13 C 1.53324 * 103.82119 * 20.85836 * 12 11 9 14 14 C 1.54029 * 110.49420 * 240.01640 * 13 12 11 15 15 C 1.55167 * 101.89350 * 260.84616 * 14 13 12 16 16 O 1.44732 * 103.72510 * 323.71403 * 15 14 13 17 17 C 1.43981 * 106.85848 * 39.31631 * 16 15 14 18 18 O 1.42819 * 108.27736 * 1.61996 * 13 12 11 19 19 H 0.97004 * 119.99885 * 359.97438 * 1 2 3 20 20 H 1.09002 * 110.87067 * 86.79289 * 11 9 7 21 21 H 1.08993 * 111.05290 * 323.18210 * 11 9 7 22 22 H 1.08998 * 110.55254 * 262.27663 * 12 11 9 23 23 H 1.08994 * 110.67821 * 139.50402 * 12 11 9 24 24 H 1.08995 * 110.94683 * 18.99584 * 14 13 12 25 25 H 1.08996 * 110.94134 * 142.70149 * 14 13 12 26 26 H 1.09004 * 110.59989 * 82.13621 * 15 14 13 27 27 H 1.08998 * 110.59930 * 204.92485 * 15 14 13 28 28 H 1.09002 * 109.92688 * 214.51978 * 17 16 15 29 29 H 1.08996 * 109.92779 * 93.40002 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5811 -2.5538 0.8577 11 6 2.2353 -3.6973 -0.0005 12 6 1.3801 -4.8211 -0.6399 13 6 0.2826 -4.0617 -1.3947 14 6 -1.1083 -4.4511 -0.8597 15 6 -1.5762 -5.4907 -1.9122 16 8 -1.0496 -4.9780 -3.1590 17 6 0.2627 -4.4579 -2.8756 18 8 0.5157 -2.6617 -1.2350 19 1 -0.4850 0.8401 0.0004 20 1 2.5259 -3.9611 1.0164 21 1 3.1130 -3.4828 -0.6101 22 1 0.9446 -5.4563 0.1314 23 1 1.9789 -5.4149 -1.3304 24 1 -1.0327 -4.9043 0.1287 25 1 -1.7742 -3.5884 -0.8414 26 1 -1.1544 -6.4722 -1.6957 27 1 -2.6646 -5.5410 -1.9441 28 1 0.4579 -3.5836 -3.4967 29 1 1.0148 -5.2236 -3.0654 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307451575.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:32 Heat of formation + Delta-G solvation = -116.841453 kcal Electronic energy + Delta-G solvation = -13226.913694 eV Core-core repulsion = 10920.945916 eV Total energy + Delta-G solvation = -2305.967778 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.21050 -38.48335 -34.78335 -32.88036 -32.10371 -30.34468 -27.96039 -24.76930 -23.72469 -22.17417 -20.98986 -18.68610 -17.39400 -17.06748 -16.74369 -16.38958 -15.98460 -15.07526 -14.74736 -14.34227 -13.89231 -13.57247 -13.47302 -12.86892 -12.69886 -12.42155 -12.40254 -12.17527 -12.02732 -11.49524 -11.25285 -11.06088 -10.74695 -10.68510 -9.95456 -8.19625 -6.40579 1.39669 1.43036 1.50716 2.38849 2.97545 2.98783 3.46146 3.66219 3.87529 4.01115 4.13798 4.24575 4.41286 4.57680 4.64560 4.73482 4.81663 4.86108 4.92194 5.02703 5.06952 5.16347 5.24794 5.51986 5.71755 5.86939 6.12976 6.57270 6.93393 7.35658 8.88763 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.055558 B = 0.010603 C = 0.009899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.855030 B = 2640.144733 C = 2827.991610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 0.965 3.035 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.068 0.932 9 C 0.200 3.800 10 H -0.004 1.004 11 C -0.140 4.140 12 C -0.131 4.131 13 C 0.047 3.953 14 C -0.167 4.167 15 C 0.053 3.947 16 O -0.401 6.401 17 C 0.058 3.942 18 O -0.380 6.380 19 H 0.262 0.738 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.090 0.910 23 H 0.094 0.906 24 H 0.093 0.907 25 H 0.050 0.950 26 H 0.089 0.911 27 H 0.105 0.895 28 H 0.068 0.932 29 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.941 -10.449 -1.073 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.182 4.182 3 Si 0.789 3.211 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.086 0.914 9 C 0.145 3.855 10 H 0.014 0.986 11 C -0.178 4.178 12 C -0.168 4.168 13 C 0.006 3.994 14 C -0.205 4.205 15 C -0.023 4.023 16 O -0.320 6.320 17 C -0.018 4.018 18 O -0.300 6.300 19 H 0.071 0.929 20 H 0.096 0.904 21 H 0.082 0.918 22 H 0.109 0.891 23 H 0.113 0.887 24 H 0.112 0.888 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.613 -10.185 -1.412 10.301 hybrid contribution 0.220 1.122 0.386 1.207 sum 0.833 -9.063 -1.026 9.159 Atomic orbital electron populations 1.70164 1.07844 1.27681 1.48575 1.26024 0.95660 1.03392 0.93114 0.85522 0.78349 0.77968 0.79252 1.19491 1.20862 1.18560 1.21464 0.93264 0.91401 1.53145 0.91416 1.20629 0.88047 0.93822 0.83031 0.98612 1.23135 0.98702 0.94997 1.00974 1.22963 0.96158 0.97481 1.00184 1.23042 0.95460 0.85379 0.95537 1.23528 0.96903 0.99510 1.00593 1.23725 1.00475 0.96320 0.81741 1.88901 1.31598 1.79602 1.31928 1.23224 0.85484 0.98615 0.94501 1.89114 1.76769 1.20154 1.43920 0.92874 0.90403 0.91784 0.89147 0.88731 0.88820 0.93112 0.89301 0.87640 0.91352 0.88931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.79 13.12 21.45 0.28 -55.51 15 2 C 0.02 1.16 5.44 84.66 0.46 1.62 15 3 Si 0.97 44.46 29.54 68.60 2.03 46.49 15 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 15 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 15 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 15 7 C -0.56 -31.84 8.81 25.60 0.23 -31.62 15 8 H 0.07 3.70 7.76 -2.91 -0.02 3.67 15 9 C 0.20 10.53 3.10 30.56 0.09 10.62 15 10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 15 11 C -0.14 -5.60 6.56 31.99 0.21 -5.39 15 12 C -0.13 -4.24 6.30 31.39 0.20 -4.05 15 13 C 0.05 1.85 1.09 -10.23 -0.01 1.84 15 14 C -0.17 -5.95 6.44 31.68 0.20 -5.74 15 15 C 0.05 1.50 7.73 72.72 0.56 2.07 15 16 O -0.40 -14.15 11.56 -148.98 -1.72 -15.88 15 17 C 0.06 2.09 7.21 72.09 0.52 2.61 15 18 O -0.38 -20.32 10.31 -148.98 -1.54 -21.86 15 19 H 0.26 15.28 8.31 -92.71 -0.77 14.51 15 20 H 0.08 2.78 8.14 -2.39 -0.02 2.77 15 21 H 0.06 2.55 8.04 -2.39 -0.02 2.53 15 22 H 0.09 2.49 7.27 -2.39 -0.02 2.47 15 23 H 0.09 2.52 7.17 -2.39 -0.02 2.50 15 24 H 0.09 2.90 7.36 -2.39 -0.02 2.88 15 25 H 0.05 2.15 8.10 -2.39 -0.02 2.13 15 26 H 0.09 1.95 8.14 -2.39 -0.02 1.93 15 27 H 0.11 2.56 8.14 -2.39 -0.02 2.54 15 28 H 0.07 2.73 7.99 -2.39 -0.02 2.72 15 29 H 0.09 2.66 7.14 -2.39 -0.02 2.65 15 Total: -1.00 -68.49 240.25 2.64 -65.85 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: 1.12 Total: 8.94 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: 2.46 Total: -28.03 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.28 Total: -55.51 kcal Atomic # 8 Polarization: -34.47 SS G_CDS: -3.26 Total: -37.73 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.49 2.64 -65.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307451575.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.993 kcal (2) G-P(sol) polarization free energy of solvation -68.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds