Wall clock time and date at job start Mon Mar 30 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34560 * 119.50560 * 269.72314 * 10 9 7 12 12 O 1.21237 * 120.01657 * 4.43822 * 11 10 9 13 13 C 1.50774 * 119.99224 * 184.23054 * 11 10 9 14 14 C 1.53036 * 109.28916 * 326.19372 * 13 11 10 15 15 N 1.46412 * 109.52084 * 46.51247 * 14 13 11 16 16 C 1.34292 * 120.93010 * 324.15385 * 15 14 13 17 17 O 1.21533 * 119.21095 * 185.70720 * 16 15 14 18 18 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 20 20 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 21 21 H 1.08999 * 109.61495 * 206.15804 * 13 11 10 22 22 H 1.09004 * 109.32577 * 86.04658 * 13 11 10 23 23 H 1.09001 * 109.45974 * 286.50331 * 14 13 11 24 24 H 1.09001 * 109.45819 * 166.52607 * 14 13 11 25 25 H 0.97003 * 119.53441 * 144.12225 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2028 -3.6127 -0.0102 11 6 2.6293 -4.1149 -1.1835 12 8 2.2895 -3.5954 -2.2249 13 6 3.5337 -5.3211 -1.2029 14 6 4.4561 -5.2809 0.0176 15 7 3.6714 -4.9701 1.2139 16 6 2.6327 -4.1208 1.1567 17 8 2.0683 -3.8040 2.1853 18 1 -0.4850 0.8401 -0.0004 19 1 0.6242 -2.5609 0.8844 20 1 0.6244 -2.5529 -0.8956 21 1 4.1334 -5.3141 -2.1130 22 1 2.9279 -6.2267 -1.1718 23 1 5.2168 -4.5137 -0.1272 24 1 4.9376 -6.2510 0.1409 25 1 3.9048 -5.3838 2.0597 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307724600.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:52 Heat of formation + Delta-G solvation = -61.389530 kcal Electronic energy + Delta-G solvation = -12800.650733 eV Core-core repulsion = 10393.547187 eV Total energy + Delta-G solvation = -2407.103545 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.91988 -38.04182 -35.65443 -34.35858 -32.44177 -30.38543 -27.70382 -24.49022 -22.87397 -22.40021 -18.42128 -17.50185 -16.97280 -16.63423 -15.73739 -15.03584 -14.37449 -14.10189 -13.89876 -13.55981 -13.03219 -12.33739 -12.15517 -11.59463 -11.28389 -11.00586 -10.64870 -10.32788 -9.89281 -9.71528 -9.40197 -9.00615 -8.43804 -8.39539 -6.04947 -4.08587 2.43864 3.11321 3.32706 3.38519 3.43543 3.73440 3.91146 4.45897 4.70999 4.77463 5.09871 5.29078 5.34491 5.48041 5.74671 6.56288 6.75097 7.13985 7.31701 7.43216 7.88102 8.10637 8.15860 8.46741 8.81450 8.95363 9.54542 11.04979 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.043990 B = 0.011835 C = 0.011061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.355847 B = 2365.394512 C = 2530.695848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.240 3.760 10 N -0.555 5.555 11 C 0.509 3.491 12 O -0.497 6.497 13 C -0.161 4.161 14 C 0.113 3.887 15 N -0.743 5.743 16 C 0.709 3.291 17 O -0.553 6.553 18 H 0.264 0.736 19 H 0.057 0.943 20 H 0.052 0.948 21 H 0.116 0.884 22 H 0.104 0.896 23 H 0.070 0.930 24 H 0.093 0.907 25 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.924 -11.495 -0.428 14.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.075 0.925 9 C 0.122 3.878 10 N -0.299 5.299 11 C 0.297 3.703 12 O -0.370 6.370 13 C -0.202 4.202 14 C -0.012 4.012 15 N -0.403 5.403 16 C 0.410 3.590 17 O -0.427 6.427 18 H 0.074 0.926 19 H 0.075 0.925 20 H 0.070 0.930 21 H 0.134 0.866 22 H 0.122 0.878 23 H 0.088 0.912 24 H 0.111 0.889 25 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 8.199 -10.810 -0.619 13.582 hybrid contribution 0.645 0.703 0.263 0.990 sum 8.844 -10.107 -0.356 13.435 Atomic orbital electron populations 1.69944 1.05983 1.27056 1.50084 1.24896 0.94946 0.99258 0.94845 0.86361 0.79862 0.83069 0.77635 1.19844 1.20774 1.20778 1.21267 0.93169 0.90343 1.51700 0.92512 1.19610 0.87248 0.80921 1.00000 1.46435 1.44000 1.34877 1.04593 1.20669 0.80814 0.84850 0.83981 1.90719 1.55128 1.59478 1.31645 1.22246 0.99001 0.97993 1.00940 1.21427 0.93484 1.02230 0.84020 1.45168 1.32651 1.49767 1.12703 1.15765 0.80417 0.78367 0.84405 1.90943 1.57988 1.61268 1.32535 0.92625 0.92484 0.93020 0.86590 0.87809 0.91205 0.88871 0.74783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.29 55.43 0.74 -26.62 15 2 C 0.06 1.87 5.46 -17.82 -0.10 1.77 15 3 Si 0.90 22.56 29.54 -169.99 -5.02 17.54 15 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 15 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 7 C -0.53 -15.69 9.38 -34.44 -0.32 -16.01 15 8 H 0.06 1.69 7.81 -52.49 -0.41 1.28 15 9 C 0.24 6.70 4.87 -5.20 -0.03 6.67 15 10 N -0.56 -12.66 2.53 -122.32 -0.31 -12.96 15 11 C 0.51 10.16 7.48 -11.05 -0.08 10.08 15 12 O -0.50 -11.85 16.66 5.59 0.09 -11.75 15 13 C -0.16 -1.95 6.27 -27.83 -0.17 -2.13 15 14 C 0.11 1.16 7.25 -4.07 -0.03 1.13 15 15 N -0.74 -10.38 5.58 -65.53 -0.37 -10.75 15 16 C 0.71 14.67 8.20 -87.74 -0.72 13.95 15 17 O -0.55 -13.60 16.57 5.34 0.09 -13.51 15 18 H 0.26 7.56 8.31 -40.82 -0.34 7.22 15 19 H 0.06 1.70 7.22 -51.93 -0.37 1.33 15 20 H 0.05 1.53 7.44 -51.93 -0.39 1.14 15 21 H 0.12 1.15 8.14 -51.93 -0.42 0.73 15 22 H 0.10 1.04 8.14 -51.93 -0.42 0.62 15 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 24 H 0.09 0.55 8.14 -51.93 -0.42 0.12 15 25 H 0.41 4.67 8.90 -40.82 -0.36 4.31 15 LS Contribution 226.65 15.07 3.42 3.42 Total: -1.00 -36.27 226.65 -5.17 -41.44 By element: Atomic # 1 Polarization: 0.10 SS G_CDS: -2.36 Total: -2.26 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: -1.45 Total: 15.46 kcal Atomic # 7 Polarization: -50.39 SS G_CDS: 0.06 Total: -50.33 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: 0.18 Total: -25.26 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 3.42 Total: 3.42 kcal Total: -36.27 -5.17 -41.44 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307724600.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.949 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds