Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47121 * 240.00196 * 3 2 1 5 5 H 1.48503 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47451 * 120.00172 * 3 2 1 7 7 C 1.40233 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.39994 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.32987 * 125.96158 * 0.30809 * 9 7 2 11 11 C 1.32756 * 109.22682 * 180.17102 * 10 9 7 12 12 C 1.36219 * 108.61652 * 359.56246 * 11 10 9 13 13 N 1.36418 * 107.19767 * 0.26917 * 12 11 10 14 14 C 1.46499 * 126.55823 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47171 * 265.02265 * 14 13 12 16 16 C 1.53000 * 109.46952 * 180.02562 * 15 14 13 17 17 F 1.39902 * 109.46900 * 179.97438 * 16 15 14 18 18 H 0.96993 * 120.00262 * 359.97438 * 1 2 3 19 19 H 1.08002 * 125.69446 * 179.83334 * 11 10 9 20 20 H 1.08008 * 126.39975 * 180.29685 * 12 11 10 21 21 H 1.08996 * 109.46835 * 25.02307 * 14 13 12 22 22 H 1.08996 * 109.46918 * 145.01713 * 14 13 12 23 23 H 1.09001 * 109.46590 * 299.99626 * 15 14 13 24 24 H 1.08998 * 109.46916 * 59.99822 * 15 14 13 25 25 H 1.08996 * 109.46875 * 299.99932 * 16 15 14 26 26 H 1.09003 * 109.47127 * 60.00370 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2759 2.7465 0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0081 -1.2144 -0.0005 8 1 3.0881 -1.2144 -0.0010 9 6 1.3082 -2.4269 -0.0005 10 7 -0.0144 -2.5651 -0.0058 11 6 -0.3190 -3.8572 -0.0002 12 6 0.8377 -4.5766 -0.0009 13 7 1.8685 -3.6830 -0.0010 14 6 3.2987 -4.0006 -0.0011 15 6 3.8238 -3.9889 1.4359 16 6 5.3175 -4.3199 1.4357 17 9 5.7978 -4.3087 2.7496 18 1 -0.4850 0.8400 0.0004 19 1 -1.3173 -4.2694 0.0000 20 1 0.9229 -5.6534 -0.0017 21 1 3.4514 -4.9884 -0.4357 22 1 3.8358 -3.2574 -0.5903 23 1 3.6710 -3.0010 1.8705 24 1 3.2866 -4.7321 2.0251 25 1 5.4707 -5.3076 1.0009 26 1 5.8544 -3.5763 0.8467 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308095976.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = -5.734511 kcal Electronic energy + Delta-G solvation = -12311.878401 eV Core-core repulsion = 9919.561027 eV Total energy + Delta-G solvation = -2392.317373 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -47.46730 -39.85294 -34.48088 -33.29450 -30.35579 -28.60377 -25.38174 -24.60515 -21.71068 -19.87867 -19.22708 -16.85877 -16.14116 -15.73378 -15.35065 -14.84217 -14.36769 -13.75622 -13.30093 -12.72761 -12.43415 -11.93908 -11.54611 -11.35395 -11.09515 -11.05530 -10.86638 -10.45048 -10.39307 -10.13394 -9.19020 -7.96021 -7.74606 -7.03594 -6.37619 -4.26117 3.07025 3.16334 3.17369 3.65604 4.01139 4.26445 4.75189 4.90183 5.01166 5.09253 5.30399 5.42565 5.68429 5.80198 5.99765 6.19687 6.32762 6.51919 6.59391 7.15505 7.31043 7.63680 8.09714 8.23968 8.60379 8.98737 9.34558 10.27678 10.55733 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.012918 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.764073 B = 2167.056505 C = 3059.835156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.082 3.918 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.463 4.463 8 H 0.076 0.924 9 C 0.376 3.624 10 N -0.519 5.519 11 C -0.015 4.015 12 C -0.180 4.180 13 N -0.508 5.508 14 C 0.134 3.866 15 C -0.170 4.170 16 C 0.066 3.934 17 F -0.222 7.222 18 H 0.272 0.728 19 H 0.133 0.867 20 H 0.134 0.866 21 H 0.068 0.932 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.101 -4.506 0.348 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.367 5.367 2 C -0.142 4.142 3 Si 0.733 3.267 4 H -0.192 1.192 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.503 4.503 8 H 0.094 0.906 9 C 0.133 3.867 10 N -0.240 5.240 11 C -0.168 4.168 12 C -0.310 4.310 13 N -0.199 5.199 14 C 0.009 3.991 15 C -0.208 4.208 16 C 0.011 3.989 17 F -0.203 7.203 18 H 0.083 0.917 19 H 0.150 0.850 20 H 0.151 0.849 21 H 0.087 0.913 22 H 0.098 0.902 23 H 0.105 0.895 24 H 0.091 0.909 25 H 0.089 0.911 26 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.414 -3.832 0.359 8.353 hybrid contribution 0.964 -0.138 0.087 0.978 sum 8.378 -3.969 0.445 9.281 Atomic orbital electron populations 1.70004 1.06894 1.27675 1.32165 1.25688 0.94740 1.00141 0.93581 0.86396 0.79880 0.80925 0.79501 1.19249 1.20332 1.19229 1.18045 0.93259 0.87679 1.51274 0.90598 1.20297 0.87578 0.83491 0.95332 1.71291 1.10228 1.14511 1.27987 1.22142 0.95942 0.92148 1.06546 1.21817 0.88754 0.93947 1.26448 1.45363 1.03778 1.07414 1.63301 1.21048 0.81992 1.00863 0.95239 1.22578 0.94126 1.04695 0.99448 1.21921 0.95051 1.02800 0.79161 1.92748 1.89634 1.98156 1.39762 0.91687 0.84950 0.84877 0.91349 0.90239 0.89525 0.90883 0.91079 0.90619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.02 11.90 55.56 0.66 -20.35 15 2 C 0.08 2.18 5.50 -17.29 -0.10 2.08 15 3 Si 0.91 19.23 29.56 -169.99 -5.03 14.20 15 4 H -0.27 -5.52 7.11 56.52 0.40 -5.12 15 5 H -0.28 -5.78 7.11 56.52 0.40 -5.37 15 6 H -0.27 -5.56 7.11 56.52 0.40 -5.15 15 7 C -0.46 -12.55 9.02 -38.17 -0.34 -12.89 15 8 H 0.08 1.87 7.29 -52.49 -0.38 1.49 15 9 C 0.38 10.50 7.43 -155.59 -1.16 9.34 15 10 N -0.52 -15.35 9.41 -12.72 -0.12 -15.47 15 11 C -0.02 -0.39 11.85 -17.88 -0.21 -0.60 15 12 C -0.18 -4.19 11.60 -16.24 -0.19 -4.38 15 13 N -0.51 -12.00 2.81 -115.97 -0.33 -12.32 15 14 C 0.13 2.37 5.85 -4.04 -0.02 2.35 15 15 C -0.17 -2.75 5.99 -26.73 -0.16 -2.91 15 16 C 0.07 0.84 7.55 37.16 0.28 1.12 15 17 F -0.22 -3.36 17.36 2.25 0.04 -3.32 15 18 H 0.27 7.02 8.29 -40.82 -0.34 6.68 15 19 H 0.13 3.00 8.06 -52.49 -0.42 2.58 15 20 H 0.13 2.61 8.06 -52.48 -0.42 2.19 15 21 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 22 H 0.08 1.36 7.60 -51.93 -0.39 0.97 15 23 H 0.09 1.62 8.14 -51.93 -0.42 1.20 15 24 H 0.07 1.23 8.14 -51.93 -0.42 0.80 15 25 H 0.07 0.73 8.14 -51.93 -0.42 0.31 15 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 15 LS Contribution 237.14 15.07 3.57 3.57 Total: -1.00 -32.03 237.14 -5.97 -38.00 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -2.87 Total: 1.58 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -1.90 Total: -5.89 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: 0.22 Total: -48.15 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.04 Total: -3.32 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -32.03 -5.97 -38.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308095976.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.263 kcal (2) G-P(sol) polarization free energy of solvation -32.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds