Wall clock time and date at job start Mon Mar 30 2020 02:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30691 * 1 3 3 Si 1.86798 * 119.99972 * 2 1 4 4 H 1.48501 * 109.47121 * 240.00196 * 3 2 1 5 5 H 1.48503 * 109.47178 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.47451 * 120.00172 * 3 2 1 7 7 C 1.40233 * 120.00201 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00308 * 179.97438 * 7 2 1 9 9 C 1.39994 * 120.00202 * 359.97438 * 7 2 1 10 10 N 1.32987 * 125.96158 * 0.30809 * 9 7 2 11 11 C 1.32756 * 109.22682 * 180.17102 * 10 9 7 12 12 C 1.36219 * 108.61652 * 359.56246 * 11 10 9 13 13 N 1.36418 * 107.19767 * 0.26917 * 12 11 10 14 14 C 1.46499 * 126.55823 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.47171 * 265.02265 * 14 13 12 16 16 C 1.53000 * 109.46952 * 180.02562 * 15 14 13 17 17 F 1.39902 * 109.46900 * 179.97438 * 16 15 14 18 18 H 0.96993 * 120.00262 * 359.97438 * 1 2 3 19 19 H 1.08002 * 125.69446 * 179.83334 * 11 10 9 20 20 H 1.08008 * 126.39975 * 180.29685 * 12 11 10 21 21 H 1.08996 * 109.46835 * 25.02307 * 14 13 12 22 22 H 1.08996 * 109.46918 * 145.01713 * 14 13 12 23 23 H 1.09001 * 109.46590 * 299.99626 * 15 14 13 24 24 H 1.08998 * 109.46916 * 59.99822 * 15 14 13 25 25 H 1.08996 * 109.46875 * 299.99932 * 16 15 14 26 26 H 1.09003 * 109.47127 * 60.00370 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6177 0.0000 4 1 3.0946 1.6964 -1.2125 5 1 1.2759 2.7465 0.0006 6 1 3.0947 1.6964 1.2124 7 6 2.0081 -1.2144 -0.0005 8 1 3.0881 -1.2144 -0.0010 9 6 1.3082 -2.4269 -0.0005 10 7 -0.0144 -2.5651 -0.0058 11 6 -0.3190 -3.8572 -0.0002 12 6 0.8377 -4.5766 -0.0009 13 7 1.8685 -3.6830 -0.0010 14 6 3.2987 -4.0006 -0.0011 15 6 3.8238 -3.9889 1.4359 16 6 5.3175 -4.3199 1.4357 17 9 5.7978 -4.3087 2.7496 18 1 -0.4850 0.8400 0.0004 19 1 -1.3173 -4.2694 0.0000 20 1 0.9229 -5.6534 -0.0017 21 1 3.4514 -4.9884 -0.4357 22 1 3.8358 -3.2574 -0.5903 23 1 3.6710 -3.0010 1.8705 24 1 3.2866 -4.7321 2.0251 25 1 5.4707 -5.3076 1.0009 26 1 5.8544 -3.5763 0.8467 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308095976.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:51 Heat of formation + Delta-G solvation = -25.545895 kcal Electronic energy + Delta-G solvation = -12312.737487 eV Core-core repulsion = 9919.561027 eV Total energy + Delta-G solvation = -2393.176459 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.57281 -41.75751 -35.98597 -35.24570 -31.98051 -30.58404 -27.07930 -26.27596 -23.02051 -21.83769 -21.05583 -18.66330 -17.53604 -17.24288 -16.64181 -16.38628 -15.84140 -15.21024 -14.97987 -14.50697 -14.24775 -13.69658 -13.11653 -13.02949 -12.74523 -12.43373 -12.34751 -12.04511 -11.90783 -11.57024 -11.08679 -9.87965 -9.75367 -9.01822 -8.31866 -6.27933 1.37995 1.43506 1.56587 1.82390 2.26233 2.61978 2.77872 3.59696 3.77802 3.81807 3.97238 4.22157 4.24038 4.46718 4.58578 4.72141 4.82240 4.89786 5.17314 5.23492 5.39005 5.72350 6.17886 6.29374 6.69927 7.02244 7.41317 8.31514 8.64599 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.026768 B = 0.012918 C = 0.009149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.764073 B = 2167.056505 C = 3059.835156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.030 3.970 3 Si 0.990 3.010 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.490 4.490 8 H 0.091 0.909 9 C 0.339 3.661 10 N -0.569 5.569 11 C -0.062 4.062 12 C -0.150 4.150 13 N -0.508 5.508 14 C 0.125 3.875 15 C -0.160 4.160 16 C 0.071 3.929 17 F -0.236 7.236 18 H 0.275 0.725 19 H 0.149 0.851 20 H 0.178 0.822 21 H 0.108 0.892 22 H 0.085 0.915 23 H 0.052 0.948 24 H 0.065 0.935 25 H 0.107 0.893 26 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.314 -5.316 0.002 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.189 4.189 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.184 1.184 7 C -0.529 4.529 8 H 0.109 0.891 9 C 0.094 3.906 10 N -0.292 5.292 11 C -0.213 4.213 12 C -0.281 4.281 13 N -0.197 5.197 14 C 0.002 3.998 15 C -0.199 4.199 16 C 0.016 3.984 17 F -0.217 7.217 18 H 0.085 0.915 19 H 0.167 0.833 20 H 0.195 0.805 21 H 0.126 0.874 22 H 0.103 0.897 23 H 0.070 0.930 24 H 0.083 0.917 25 H 0.125 0.875 26 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.660 -4.681 0.014 10.734 hybrid contribution 0.267 -0.071 0.195 0.338 sum 9.927 -4.752 0.209 11.007 Atomic orbital electron populations 1.70162 1.09023 1.28830 1.34122 1.26776 0.95550 1.04121 0.92435 0.85157 0.78333 0.75432 0.80028 1.17908 1.19934 1.18372 1.18495 0.94105 0.88245 1.52056 0.89140 1.20604 0.87792 0.85329 0.96873 1.71153 1.12002 1.16852 1.29146 1.22608 0.97963 0.91661 1.09096 1.22472 0.87877 0.95698 1.22055 1.45671 1.06249 1.06215 1.61559 1.21447 0.78698 1.03127 0.96478 1.22432 0.96972 1.02546 0.97991 1.22025 0.92203 1.05510 0.78654 1.92724 1.89542 1.98326 1.41135 0.91513 0.83332 0.80460 0.87389 0.89671 0.92960 0.91658 0.87469 0.88639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -46.56 11.90 21.88 0.26 -46.30 15 2 C 0.03 1.61 5.50 85.35 0.47 2.08 15 3 Si 0.99 39.68 29.56 68.60 2.03 41.70 15 4 H -0.26 -9.60 7.11 99.48 0.71 -8.89 15 5 H -0.27 -10.68 7.11 99.48 0.71 -9.98 15 6 H -0.26 -9.94 7.11 99.48 0.71 -9.23 15 7 C -0.49 -26.88 9.02 23.18 0.21 -26.67 15 8 H 0.09 4.46 7.29 -2.91 -0.02 4.44 15 9 C 0.34 19.23 7.43 133.59 0.99 20.22 15 10 N -0.57 -34.63 9.41 -194.17 -1.83 -36.46 15 11 C -0.06 -3.24 11.85 84.08 1.00 -2.24 15 12 C -0.15 -6.71 11.60 83.51 0.97 -5.74 15 13 N -0.51 -23.36 2.81 -520.83 -1.46 -24.82 15 14 C 0.13 4.09 5.85 86.38 0.51 4.60 15 15 C -0.16 -4.88 5.99 30.59 0.18 -4.70 15 16 C 0.07 1.56 7.55 71.98 0.54 2.10 15 17 F -0.24 -6.57 17.36 44.97 0.78 -5.79 15 18 H 0.27 14.71 8.29 -92.71 -0.77 13.94 15 19 H 0.15 6.82 8.06 -2.91 -0.02 6.79 15 20 H 0.18 6.20 8.06 -2.91 -0.02 6.18 15 21 H 0.11 2.69 8.14 -2.39 -0.02 2.68 15 22 H 0.08 2.70 7.60 -2.39 -0.02 2.68 15 23 H 0.05 1.94 8.14 -2.39 -0.02 1.92 15 24 H 0.06 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.11 1.64 8.14 -2.39 -0.02 1.62 15 26 H 0.10 1.75 8.14 -2.39 -0.02 1.73 15 Total: -1.00 -71.91 237.14 5.82 -66.10 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 1.17 Total: 15.93 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: 4.87 Total: -10.35 kcal Atomic # 7 Polarization: -104.56 SS G_CDS: -3.03 Total: -107.59 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.78 Total: -5.79 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.70 kcal Total: -71.91 5.82 -66.10 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308095976.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.552 kcal (2) G-P(sol) polarization free energy of solvation -71.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds