Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47324 * 2 1 4 4 C 1.53003 * 109.46773 * 119.99659 * 2 1 3 5 5 H 1.08992 * 115.55493 * 274.32973 * 4 2 1 6 6 C 1.53006 * 117.51468 * 128.62707 * 4 2 1 7 7 C 1.52999 * 60.00089 * 252.52084 * 6 4 2 8 8 H 1.09002 * 117.49803 * 107.49109 * 7 6 4 9 9 C 1.50700 * 117.51845 * 252.51832 * 7 6 4 10 10 O 1.21216 * 119.99825 * 68.71408 * 9 7 6 11 11 O 1.34309 * 120.00464 * 248.71727 * 9 7 6 12 12 C 1.34914 * 117.00107 * 180.02562 * 11 9 7 13 13 H 1.07994 * 120.00276 * 359.97438 * 12 11 9 14 14 C 1.38755 * 119.99669 * 180.02562 * 12 11 9 15 15 N 1.31439 * 120.00152 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99792 * 179.97438 * 14 12 11 17 17 H 1.48494 * 109.47010 * 60.00105 * 16 14 12 18 18 H 1.48507 * 109.46909 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47004 * 299.99920 * 16 14 12 20 20 H 1.09002 * 109.47022 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47221 * 300.00086 * 1 2 3 22 22 H 1.09005 * 109.47136 * 60.00493 * 1 2 3 23 23 H 1.08999 * 109.47225 * 239.99357 * 2 1 3 24 24 H 1.08997 * 109.47494 * 179.97438 * 3 2 1 25 25 H 1.08999 * 109.47047 * 299.99831 * 3 2 1 26 26 H 1.09000 * 109.47042 * 59.99805 * 3 2 1 27 27 H 1.09003 * 117.49619 * 145.02781 * 6 4 2 28 28 H 1.08995 * 117.50015 * 0.02562 * 6 4 2 29 29 H 0.96998 * 119.99995 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2493 5 1 2.1266 -0.1060 2.1449 6 6 3.0742 -1.8314 1.0520 7 6 1.6356 -2.1852 1.4344 8 1 1.0066 -2.6346 0.6659 9 6 1.3872 -2.6661 2.8408 10 8 1.5084 -1.9010 3.7732 11 8 1.0315 -3.9423 3.0613 12 6 0.8237 -4.3075 4.3434 13 1 0.9456 -3.5854 5.1371 14 6 0.4545 -5.6112 4.6421 15 7 0.3066 -6.4902 3.6762 16 14 0.1676 -6.1171 6.4173 17 1 -0.9239 -5.2935 6.9965 18 1 -0.2139 -7.5515 6.4678 19 1 1.4130 -5.9089 7.1988 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8901 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 3.8413 -1.9464 1.8178 28 1 3.3918 -2.0478 0.0321 29 1 0.0489 -7.4017 3.8851 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379317234.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -75.351456 kcal Electronic energy + Delta-G solvation = -12441.862420 eV Core-core repulsion = 10137.693783 eV Total energy + Delta-G solvation = -2304.168637 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.31627 -37.52324 -34.96366 -33.01152 -32.08435 -27.08761 -25.94454 -23.70140 -22.58821 -19.99838 -19.11769 -17.67704 -16.69770 -15.07159 -14.92518 -14.34811 -14.25874 -13.98361 -13.03596 -12.91434 -12.44715 -12.10457 -11.87666 -11.48091 -11.19806 -11.17403 -10.95267 -10.52934 -10.43943 -10.43095 -9.87641 -9.81971 -9.60795 -8.95924 -8.53766 -6.37120 -4.04798 3.12433 3.20453 3.24782 3.40512 3.92787 4.24874 4.47837 4.99206 5.02460 5.15975 5.20758 5.40099 5.45586 5.67321 5.73515 5.77505 5.94027 5.95602 6.01783 6.14681 6.26649 6.37014 6.44764 6.64613 6.89564 7.43189 7.99772 8.76954 9.11554 9.93285 10.81120 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.071748 B = 0.007367 C = 0.007283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 390.158491 B = 3800.011844 C = 3843.429962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.065 4.065 3 C -0.142 4.142 4 C -0.121 4.121 5 H 0.115 0.885 6 C -0.153 4.153 7 C -0.141 4.141 8 H 0.122 0.878 9 C 0.426 3.574 10 O -0.558 6.558 11 O -0.211 6.211 12 C -0.383 4.383 13 H 0.094 0.906 14 C 0.042 3.958 15 N -0.866 5.866 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.279 1.279 19 H -0.270 1.270 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.052 0.948 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.175 9.075 -7.064 11.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.200 4.200 4 C -0.139 4.139 5 H 0.133 0.867 6 C -0.190 4.190 7 C -0.160 4.160 8 H 0.140 0.860 9 C 0.273 3.727 10 O -0.456 6.456 11 O -0.118 6.118 12 C -0.459 4.459 13 H 0.112 0.888 14 C -0.162 4.162 15 N -0.503 5.503 16 Si 0.768 3.232 17 H -0.195 1.195 18 H -0.204 1.204 19 H -0.195 1.195 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.088 0.912 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.135 9.011 -6.846 11.516 hybrid contribution -0.185 -0.424 0.868 0.984 sum 1.951 8.587 -5.978 10.643 Atomic orbital electron populations 1.21833 0.94922 1.02298 1.01428 1.20719 0.95869 0.95833 0.95948 1.21791 1.00993 0.95621 1.01571 1.22473 1.01771 0.89821 0.99869 0.86707 1.23057 0.91420 1.02088 1.02465 1.21573 1.00403 0.99061 0.94968 0.86027 1.22183 0.78628 0.82386 0.89523 1.90533 1.53267 1.56605 1.45160 1.83865 1.71118 1.25266 1.31510 1.21183 1.47742 0.96033 0.80947 0.88821 1.25330 0.96240 0.94581 1.00066 1.69989 1.44111 1.04065 1.32140 0.85744 0.79239 0.77643 0.80533 1.19492 1.20370 1.19511 0.92274 0.92451 0.92980 0.91157 0.92631 0.92857 0.92549 0.88493 0.88186 0.92068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.03 37.16 0.34 -1.52 15 2 C -0.07 -0.82 3.07 -90.62 -0.28 -1.10 15 3 C -0.14 -1.52 9.17 37.15 0.34 -1.18 15 4 C -0.12 -1.93 4.66 -90.61 -0.42 -2.36 15 5 H 0.11 2.02 7.64 -51.93 -0.40 1.63 15 6 C -0.15 -2.44 9.88 -26.73 -0.26 -2.71 15 7 C -0.14 -2.74 5.50 -91.77 -0.51 -3.24 15 8 H 0.12 2.20 7.61 -51.93 -0.40 1.80 15 9 C 0.43 11.06 7.69 36.01 0.28 11.34 15 10 O -0.56 -15.60 15.49 -19.06 -0.30 -15.89 15 11 O -0.21 -6.31 9.75 -20.68 -0.20 -6.51 15 12 C -0.38 -11.71 9.64 30.92 0.30 -11.41 15 13 H 0.09 2.87 6.86 -52.49 -0.36 2.51 15 14 C 0.04 1.21 5.49 -17.53 -0.10 1.11 15 15 N -0.87 -25.97 13.67 55.48 0.76 -25.22 15 16 Si 0.94 21.78 29.55 -169.99 -5.02 16.75 15 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 20 H 0.06 0.80 7.29 -51.93 -0.38 0.42 15 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 15 22 H 0.05 0.55 8.14 -51.93 -0.42 0.12 15 23 H 0.07 0.81 7.90 -51.93 -0.41 0.40 15 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 15 25 H 0.05 0.49 8.14 -51.93 -0.42 0.06 15 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 15 27 H 0.10 1.62 8.14 -51.93 -0.42 1.20 15 28 H 0.10 1.30 8.05 -51.93 -0.42 0.88 15 29 H 0.27 7.39 8.31 -40.82 -0.34 7.06 15 LS Contribution 256.44 15.07 3.86 3.86 Total: -1.00 -33.17 256.44 -5.24 -38.41 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.03 Total: -0.35 kcal Atomic # 6 Polarization: -10.75 SS G_CDS: -0.31 Total: -11.06 kcal Atomic # 7 Polarization: -25.97 SS G_CDS: 0.76 Total: -25.22 kcal Atomic # 8 Polarization: -21.91 SS G_CDS: -0.50 Total: -22.40 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.17 -5.24 -38.41 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379317234.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.941 kcal (2) G-P(sol) polarization free energy of solvation -33.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds