Wall clock time and date at job start Mon Mar 30 2020 02:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 O 1.45198 * 109.47199 * 119.99529 * 2 1 3 13 13 C 1.34233 * 117.00153 * 270.00621 * 12 2 1 14 14 O 1.20821 * 120.00092 * 359.97438 * 13 12 2 15 15 C 1.50705 * 119.99698 * 180.02562 * 13 12 2 16 16 H 1.08994 * 115.55176 * 325.66462 * 15 13 12 17 17 C 1.53002 * 117.49708 * 111.37806 * 15 13 12 18 18 C 1.52999 * 117.49225 * 179.97438 * 15 13 12 19 19 H 1.09007 * 117.49641 * 145.02175 * 18 15 13 20 20 C 1.52997 * 117.50280 * 0.02562 * 18 15 13 21 21 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 22 22 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08994 * 117.49321 * 214.97542 * 17 15 13 26 26 H 1.08994 * 117.49991 * 359.97438 * 17 15 13 27 27 H 1.09002 * 109.47204 * 60.00131 * 20 18 15 28 28 H 1.09001 * 109.47489 * 180.02562 * 20 18 15 29 29 H 1.08999 * 109.47314 * 300.00332 * 20 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 8 2.0140 -0.6844 1.1856 13 6 2.2170 0.0642 2.2812 14 8 1.9980 1.2520 2.2504 15 6 2.7193 -0.5769 3.5493 16 1 2.3675 -1.5918 3.7342 17 6 4.1373 -0.2261 4.0045 18 6 2.9311 0.3300 4.7632 19 1 2.7188 -0.0884 5.7471 20 6 2.6164 1.8180 4.5970 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7088 1.1611 -3.4845 25 1 4.7186 -1.0105 4.4890 26 1 4.7070 0.4679 3.3867 27 1 1.5675 1.9395 4.3264 28 1 2.8126 2.3379 5.5347 29 1 3.2452 2.2369 3.8113 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379321726.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:50 Heat of formation + Delta-G solvation = -90.904145 kcal Electronic energy + Delta-G solvation = -12713.167657 eV Core-core repulsion = 10408.324606 eV Total energy + Delta-G solvation = -2304.843052 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.49945 -38.68497 -36.90936 -35.33972 -31.76714 -29.60980 -27.49325 -26.06169 -23.08650 -21.99157 -20.79721 -18.70743 -18.56319 -17.28818 -16.81784 -16.23923 -15.87725 -14.89135 -14.44503 -14.05725 -13.92169 -13.55092 -13.31373 -13.21570 -12.90587 -12.80786 -12.42688 -12.38763 -12.16655 -11.60938 -11.25412 -11.18229 -11.02281 -10.84028 -10.60640 -8.30449 -6.47987 1.26173 1.40599 1.44933 1.53017 2.00357 2.40860 2.79658 3.00024 3.62121 3.83685 3.94703 4.18349 4.44516 4.50895 4.74570 4.76896 4.81237 4.86781 4.94715 5.00273 5.13412 5.17490 5.45079 5.52141 5.61397 5.91046 6.10297 6.57696 7.00631 7.25007 8.77207 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.062881 B = 0.008475 C = 0.008004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.180144 B = 3302.956412 C = 3497.459534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.217 3.783 3 H 0.005 0.995 4 C -0.551 4.551 5 H 0.066 0.934 6 C 0.016 3.984 7 N -0.918 5.918 8 Si 0.985 3.015 9 H -0.276 1.276 10 H -0.268 1.268 11 H -0.263 1.263 12 O -0.365 6.365 13 C 0.468 3.532 14 O -0.546 6.546 15 C -0.188 4.188 16 H 0.153 0.847 17 C -0.134 4.134 18 C -0.108 4.108 19 H 0.154 0.846 20 C -0.116 4.116 21 H 0.022 0.978 22 H 0.081 0.919 23 H 0.045 0.955 24 H 0.271 0.729 25 H 0.145 0.855 26 H 0.083 0.917 27 H 0.043 0.957 28 H 0.080 0.920 29 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -3.462 11.650 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.164 3.836 3 H 0.023 0.977 4 C -0.589 4.589 5 H 0.085 0.915 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.808 3.192 9 H -0.201 1.201 10 H -0.193 1.193 11 H -0.188 1.188 12 O -0.282 6.282 13 C 0.313 3.687 14 O -0.437 6.437 15 C -0.207 4.207 16 H 0.171 0.829 17 C -0.171 4.171 18 C -0.126 4.126 19 H 0.172 0.828 20 C -0.173 4.173 21 H 0.041 0.959 22 H 0.100 0.900 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.163 0.837 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 4.026 -2.990 11.450 12.500 hybrid contribution -0.127 0.098 -1.165 1.176 sum 3.900 -2.892 10.285 11.374 Atomic orbital electron populations 1.21972 0.96796 1.00332 1.00754 1.20323 0.92011 0.91992 0.79303 0.97675 1.21278 1.33589 1.13983 0.90037 0.91529 1.25868 0.94637 0.95657 1.02202 1.70017 1.36507 1.23679 1.25333 0.85202 0.78806 0.78620 0.76590 1.20100 1.19257 1.18773 1.86465 1.76166 1.44041 1.21531 1.23576 0.73815 0.85374 0.85920 1.90576 1.50061 1.18117 1.84965 1.22014 1.05163 1.02960 0.90533 0.82899 1.23282 0.88481 1.03800 1.01543 1.22670 1.00241 0.94554 0.95087 0.82803 1.21372 1.01162 0.93641 1.01111 0.95891 0.90031 0.93596 0.91932 0.83659 0.89828 0.93763 0.90125 0.94433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.53 9.33 71.98 0.67 -6.86 15 2 C 0.22 12.40 2.56 29.85 0.08 12.48 15 3 H 0.01 0.35 7.16 -2.38 -0.02 0.33 15 4 C -0.55 -32.22 8.90 25.60 0.23 -32.00 15 5 H 0.07 3.80 7.81 -2.91 -0.02 3.78 15 6 C 0.02 0.90 5.30 84.66 0.45 1.35 15 7 N -0.92 -53.68 11.32 21.45 0.24 -53.43 15 8 Si 0.99 43.42 29.54 68.60 2.03 45.44 15 9 H -0.28 -11.69 7.11 99.48 0.71 -10.98 15 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 15 11 H -0.26 -11.10 7.11 99.48 0.71 -10.39 15 12 O -0.37 -18.54 9.86 -51.45 -0.51 -19.04 15 13 C 0.47 20.54 7.69 71.24 0.55 21.09 15 14 O -0.55 -26.73 12.33 21.98 0.27 -26.46 15 15 C -0.19 -5.59 6.30 -11.54 -0.07 -5.66 15 16 H 0.15 3.76 8.14 -2.39 -0.02 3.74 15 17 C -0.13 -3.10 9.88 30.58 0.30 -2.80 15 18 C -0.11 -2.50 6.40 -10.81 -0.07 -2.57 15 19 H 0.15 2.35 8.14 -2.38 -0.02 2.33 15 20 C -0.12 -3.24 8.43 71.98 0.61 -2.63 15 21 H 0.02 1.13 8.14 -2.39 -0.02 1.11 15 22 H 0.08 4.64 6.07 -2.39 -0.01 4.62 15 23 H 0.04 2.30 8.14 -2.39 -0.02 2.28 15 24 H 0.27 14.81 8.31 -92.71 -0.77 14.04 15 25 H 0.15 2.21 8.14 -2.39 -0.02 2.19 15 26 H 0.08 2.24 8.05 -2.39 -0.02 2.22 15 27 H 0.04 1.45 7.26 -2.39 -0.02 1.43 15 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 15 29 H 0.04 1.23 7.02 -2.39 -0.02 1.22 15 Total: -1.00 -68.14 249.69 5.90 -62.24 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: 1.13 Total: 8.85 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 2.74 Total: -17.60 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.24 Total: -53.43 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -0.24 Total: -45.50 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -68.14 5.90 -62.24 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379321726.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.665 kcal (2) G-P(sol) polarization free energy of solvation -68.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds